Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019160

Physical Location & Seq

Genomic Coordinates Reverse (-)

331687 .. 337478

Gene Structure 5792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGGAGCCCCGGAGTAGTTTACCGGGCAAATTTAGTTGTCGTGACGATACCTTTCTTATTTCTTAGTGGAAGATCGGAAAATCTTTCTCTTCATCACGAGACTGATCGGATCTGCCGGAGCCCCTATAGACGTAAAGACTTGACTTCACTGAACCGGCACTACTATTTTATTTGTCGGCTCCTACCACTCGTCCCTCGTCTGCTCGTCGAGTGCGTCCCTGGCCCTTGCTCGTCTCTAGTCGCCGATCGAGTTTTCTTTCTTTCAGAACCTCGCACGTATATGGGTCAGTCTCCTATCCTTGCCGCTGTTGACCTCTCTCCTGTCCAGCCACAGAGCAGTTCGCAGCAGGATCCTTCTCAGGACGGTAGTCCTGCCTCATTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTCTCGCTTCTCCTTGTTCCTGTTCCTAACTCCTCCCGGGTAGTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACAACAACAAATTCGCTCATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCCATCGGTATGCTCCCAGGTACCCGTAATTGTGATCCGTTTACTAGAACTAAAGGGTCTTTATGTCGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACAGCTGCTCTTTCTACACCCCCGGATATCTGGTGCCAAATTGTCGCCCGTTTCCTTATTTCTTCGATAATAGAGTTGGCTATATTTGTGGCATCGATTGTACAAGTTCGTGAAGAAGGCTGGACGAGTGGAATGAGGGAAAGCGGCTCGATCGACAAAAAAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0022804 GO:0022857 GO:0022884 GO:0032991 GO:0033036 GO:0033281 GO:0034613 GO:0042886 GO:0042887 GO:0043953 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TatC

Protein Analysis

293

Amino Acids

33.01

Weight (kDa)

8.93

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatC	PF00902	165 - 251	2.2e-08	Sec-independent protein translocase protein (TatC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00570
malus_domestica	MD15G1309600.v1.1
pyrus_communis	pycom12401g00100
rosa_chinensis	RchiOBHm_MTg0499111
rosa_laevigata	RLG00000000278 RLG00000000405 RLG00000000480
rosa_samantha	Rh3BG350200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	613
AccB1I	GGYRCC	2 cut(s)	613, 741
AccB7I	CCANNNNNTGG	1 cut(s)	486
AciI	CCGC	3 cut(s)	306, 701, 852
AclWI	GGATC	4 cut(s)	119, 347, 360, 622
AcsI	RAATTY	2 cut(s)	31, 523
AfaI	GTAC	2 cut(s)	615, 810
AfiI	CCNNNNNNNGG	1 cut(s)	486
AjnI	CCWGG	2 cut(s)	220, 609
AluBI	AGCT	1 cut(s)	713
AluI	AGCT	1 cut(s)	713
Alw26I	GTCTC	3 cut(s)	95, 240, 297
AlwI	GGATC	4 cut(s)	119, 347, 360, 622
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	346, 713
ApoI	RAATTY	2 cut(s)	31, 523
Asp718I	GGTACC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	5 cut(s)	12, 26, 469, 470, 731
AvaI	CYCGRG	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	2 cut(s)	613, 741
BanII	GRGCYC	2 cut(s)	11, 125
BauI	CACGAG	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	358, 700
BccI	CCATC	2 cut(s)	604, 685
BciT130I	CCWGG	2 cut(s)	222, 611
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	5 cut(s)	12, 26, 469, 470, 731
BcoDI	GTCTC	3 cut(s)	95, 240, 297
BfaI	CTAG	2 cut(s)	239, 638
BfmI	CTRYAG	1 cut(s)	127
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	4 cut(s)	306, 347, 714, 853
BlsI	GCNGC	4 cut(s)	307, 348, 715, 854
Bme1390I	CCNGG	7 cut(s)	12, 26, 222, 469, 470, 611, 731
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	6 cut(s)	8, 122, 182, 354, 615, 743
BmrFI	CCNGG	7 cut(s)	12, 26, 222, 469, 470, 611, 731
BmsI	GCATC	1 cut(s)	809
BoxI	GACNNNNGTC	1 cut(s)	369
BpuMI	CCSGG	5 cut(s)	12, 26, 469, 470, 731
Bsa29I	ATCGAT	2 cut(s)	413, 803
BsaAI	YACGTR	1 cut(s)	279
BsaJI	CCNNGG	5 cut(s)	10, 220, 468, 609, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse118I	RCCGGY	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	222, 611
BseCI	ATCGAT	2 cut(s)	413, 803
BseDI	CCNNGG	5 cut(s)	10, 220, 468, 609, 729
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	358, 700
Bsh1285I	CGRYCG	2 cut(s)	250, 861
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	2 cut(s)	613, 741
BshVI	ATCGAT	2 cut(s)	413, 803
BsiEI	CGRYCG	2 cut(s)	250, 861
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	6 cut(s)	12, 25, 118, 157, 469, 731
BslFI	GGGAC	2 cut(s)	179, 203
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	3 cut(s)	95, 240, 297
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	179, 203
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	11, 125
Bsp1407I	TGTACA	1 cut(s)	808
Bsp143I	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
BspACI	CCGC	3 cut(s)	306, 701, 852
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	2 cut(s)	413, 803
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	6 cut(s)	8, 122, 182, 354, 615, 743
BspPI	GGATC	4 cut(s)	119, 347, 360, 622
BspT107I	GGYRCC	2 cut(s)	613, 741
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	808
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	5 cut(s)	10, 220, 468, 609, 729
BssMI	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	222, 611
Bst4CI	ACNGT	2 cut(s)	368, 577
Bst6I	CTCTTC	2 cut(s)	96, 867
BstAUI	TGTACA	1 cut(s)	808
BstBAI	YACGTR	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	65, 360, 549
BstKTI	GATC	9 cut(s)	77, 109, 114, 250, 355, 537, 555, 630, 861
BstMAI	GTCTC	3 cut(s)	95, 240, 297
BstMBI	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
BstMCI	CGRYCG	2 cut(s)	250, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	222, 611
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	7 cut(s)	10, 24, 220, 467, 468, 609, 729
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	358, 700
BstX2I	RGATCY	3 cut(s)	111, 352, 552
BstYI	RGATCY	3 cut(s)	111, 352, 552
Bsu15I	ATCGAT	2 cut(s)	413, 803
BsuRI	GGCC	1 cut(s)	225
BsuTUI	ATCGAT	2 cut(s)	413, 803
BtsIMutI	CAGTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	224
Cfr9I	CCCGGG	1 cut(s)	468
ClaI	ATCGAT	2 cut(s)	413, 803
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	614, 809
CviAII	CATG	1 cut(s)	532
CviJI	RGCY	9 cut(s)	9, 123, 181, 225, 331, 713, 788, 828, 855
CviKI_1	RGCY	9 cut(s)	9, 123, 181, 225, 331, 713, 788, 828, 855
CviQI	GTAC	2 cut(s)	614, 809
DdeI	CTNAG	3 cut(s)	65, 360, 549
DpnI	GATC	9 cut(s)	76, 108, 113, 249, 354, 536, 554, 629, 860
DpnII	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
Eam1104I	CTCTTC	2 cut(s)	96, 867
EarI	CTCTTC	2 cut(s)	96, 867
Eco24I	GRGCYC	2 cut(s)	11, 125
Eco32I	GATATC	1 cut(s)	736
Eco88I	CYCGRG	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	220, 609
EcoRV	GATATC	1 cut(s)	736
EcoT38I	GRGCYC	2 cut(s)	11, 125
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	1 cut(s)	535
FaqI	GGGAC	2 cut(s)	179, 203
FatI	CATG	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	306, 347, 714, 853
FriOI	GRGCYC	2 cut(s)	11, 125
Fsp4HI	GCNGC	4 cut(s)	306, 347, 714, 853
FspBI	CTAG	2 cut(s)	239, 638
GluI	GCNGC	4 cut(s)	306, 347, 714, 853
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	6 cut(s)	12, 25, 118, 157, 469, 731
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	535
HincII	GTYRAC	2 cut(s)	313, 573
HindII	GTYRAC	2 cut(s)	313, 573
HinfI	GANTC	1 cut(s)	415
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	6 cut(s)	12, 25, 118, 157, 469, 731
Hpy166II	GTNNAC	4 cut(s)	22, 313, 573, 635
Hpy188I	TCNGA	3 cut(s)	79, 111, 268
Hpy188III	TCNNGA	6 cut(s)	43, 98, 362, 532, 670, 818
Hpy8I	GTNNAC	4 cut(s)	22, 313, 573, 635
Hpy99I	CGWCG	2 cut(s)	212, 684
HpyAV	CCTTC	3 cut(s)	366, 676, 818
HpyCH4III	ACNGT	2 cut(s)	368, 577
HpyCH4IV	ACGT	2 cut(s)	133, 278
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	3 cut(s)	65, 360, 549
HpySE526I	ACGT	2 cut(s)	133, 278
Hsp92II	CATG	1 cut(s)	535
KpnI	GGTACC	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	573
Kzo9I	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
LmnI	GCTCC	4 cut(s)	6, 120, 186, 611
Lsp1109I	GCAGC	2 cut(s)	358, 700
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	2 cut(s)	239, 638
MaeII	ACGT	2 cut(s)	133, 278
MaeIII	GTNAC	2 cut(s)	43, 540
MalI	GATC	9 cut(s)	76, 108, 113, 249, 354, 536, 554, 629, 860
MboI	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
MboII	GAAGA	4 cut(s)	83, 84, 762, 833
MflI	RGATCY	3 cut(s)	111, 352, 552
MhlI	GDGCHC	2 cut(s)	11, 125
MluCI	AATT	4 cut(s)	31, 523, 621, 747
MnlI	CCTC	7 cut(s)	207, 282, 326, 388, 429, 475, 837
MseI	TTAA	2 cut(s)	426, 572
MslI	CAYNNNNRTG	3 cut(s)	281, 385, 601
MspA1I	CMGCKG	2 cut(s)	308, 713
MspI	CCGG	6 cut(s)	12, 25, 118, 157, 469, 731
MspR9I	CCNGG	7 cut(s)	12, 26, 222, 469, 470, 611, 731
MvaI	CCWGG	2 cut(s)	222, 611
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	5 cut(s)	12, 26, 469, 470, 731
NdeII	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	6 cut(s)	8, 122, 182, 354, 615, 743
NmuCI	GTSAC	1 cut(s)	43
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	486
PkrI	GCNGC	4 cut(s)	307, 348, 715, 854
Ple19I	CGATCG	2 cut(s)	250, 861
Ppu21I	YACGTR	1 cut(s)	279
PshAI	GACNNNNGTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	220, 609
PspGI	CCWGG	2 cut(s)	220, 609
PspN4I	GGNNCC	6 cut(s)	8, 122, 182, 354, 615, 743
PspPI	GGNCC	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PsuI	RGATCY	3 cut(s)	111, 352, 552
PvuI	CGATCG	2 cut(s)	250, 861
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	2 cut(s)	615, 810
RsaNI	GTAC	2 cut(s)	614, 809
RseI	CAYNNNNRTG	3 cut(s)	281, 385, 601
SaqAI	TTAA	2 cut(s)	426, 572
SatI	GCNGC	4 cut(s)	306, 347, 714, 853
Sau3AI	GATC	9 cut(s)	74, 106, 111, 247, 352, 534, 552, 627, 858
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	7 cut(s)	12, 26, 222, 469, 470, 611, 731
SduI	GDGCHC	2 cut(s)	11, 125
SetI	ASST	9 cut(s)	55, 136, 274, 281, 318, 550, 615, 668, 715
SfaNI	GCATC	1 cut(s)	809
SfcI	CTRYAG	1 cut(s)	127
SmaI	CCCGGG	1 cut(s)	470
SmiMI	CAYNNNNRTG	3 cut(s)	281, 385, 601
Sse9I	AATT	4 cut(s)	31, 523, 621, 747
SsiI	CCGC	3 cut(s)	306, 701, 852
SspMI	CTAG	2 cut(s)	239, 638
StyD4I	CCNGG	7 cut(s)	10, 24, 220, 467, 468, 609, 729
TaaI	ACNGT	2 cut(s)	368, 577
TaiI	ACGT	2 cut(s)	136, 281
TaqI	TCGA	8 cut(s)	210, 250, 413, 660, 773, 803, 857, 861
TasI	AATT	4 cut(s)	31, 523, 621, 747
TatI	WGTACW	1 cut(s)	808
TauI	GCSGC	2 cut(s)	308, 855
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	426, 572
Tru9I	TTAA	2 cut(s)	426, 572
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	346, 713
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	83, 580
TspGWI	ACGGA	1 cut(s)	620
TspMI	CCCGGG	1 cut(s)	468
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	486
XapI	RAATTY	2 cut(s)	31, 523
XmaI	CCCGGG	1 cut(s)	468
XspI	CTAG	2 cut(s)	239, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.