Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019160

Physical Location & Seq

Genomic Coordinates Forward (+)

839871 .. 844665

Gene Structure 4795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGGAGCCCCGGAGTAGTTTACCGGGCAAATTTAGTTGTCGTGACGATACCTTTCTTATTTCTTAGTGGAAGATCGGAAAATCTTTCTCTTCATCACGAGACTGATCGGATCTGCCGGAGCCCCTATAGACGTAAAGACTTGACTTCACTGAACCGGCACTACTATTTTATTTGTCGGCTCCTACCACTCGTCCCTCGTCTGCTCGTCGAGTGCGTCCCTGGCCCTTGCTCGTCTCTAGTCGCCGATCGAGTTTTCTTTCTTTCAGAACCTCGCACGTATATGGGTCAGTCTCCTATCCTTGCCGCTGTTGACCTCTCTCCTGTCCAGCCACAGAGCAGTTCGCAGCAGGATCCTTCTCAGGACGGGGAAGTTCGAATCCGTTCCGTTCGGATATTGATCGGTCTTGGTTTGACATGGTTTACGCGTTACTGGTTCCCGGAAGAGTTAATATCTCCATTAGCTAAACCCTTTCTTACCCTGCCCTTGGACTCGTATTTTTTGCTATGGAGAACAAAGGACGAAATACAATCGATTCCTCTATTTAAGTGGTTCTCGCTTCTCCTTGTTCCTGTTCCTAACTCCTCCCCGGGTAGTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACAACAACAAATTCGCTCATGATCAAGTACCCGTAATTGTGATCCGTTTACTAGAACTAAAGGGTCTTTATGTCGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACAGCTGCTCTTTCTACACCCCCGGATATCTGGTGCCAAATTGTCGCCCGTTTCCTTATTTCTTCGATAATAGAGTTGGCTATATTTGTGGCATCGATTGTACAAGTTCGTGAAGAAGGCTGGACGAGTGGAATGAGGGAAAGCGGCTCGATCGACAAAAAAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009977 GO:0015031 GO:0015291 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0022804 GO:0022857 GO:0022884 GO:0032991 GO:0033036 GO:0033281 GO:0034613 GO:0042886 GO:0042887 GO:0043953 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071944 GO:0098796 GO:0098797 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TatC

Protein Analysis

309

Amino Acids

34.93

Weight (kDa)

8.68

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00570
malus_domestica	MD15G1309600.v1.1
pyrus_communis	pycom12401g00100
rosa_chinensis	RchiOBHm_MTg0499111
rosa_laevigata	RLG00000000278 RLG00000000405 RLG00000000480
rosa_samantha	Rh3BG350200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	789
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	1 cut(s)	427
AciI	CCGC	3 cut(s)	306, 749, 900
AclWI	GGATC	4 cut(s)	119, 347, 360, 670
AcsI	RAATTY	2 cut(s)	31, 644
AfaI	GTAC	2 cut(s)	663, 858
AfiI	CCNNNNNNNGG	2 cut(s)	487, 607
AflIII	ACRYGT	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	464, 761
AluI	AGCT	2 cut(s)	464, 761
Alw26I	GTCTC	3 cut(s)	95, 240, 297
AlwI	GGATC	4 cut(s)	119, 347, 360, 670
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	346, 761
ApoI	RAATTY	2 cut(s)	31, 644
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	6 cut(s)	12, 26, 440, 590, 591, 779
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	789
BanII	GRGCYC	2 cut(s)	11, 125
BauI	CACGAG	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	358, 748
BccI	CCATC	1 cut(s)	733
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	6 cut(s)	12, 26, 440, 590, 591, 779
BcoDI	GTCTC	3 cut(s)	95, 240, 297
BfaI	CTAG	2 cut(s)	239, 686
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	4 cut(s)	306, 347, 762, 901
BlsI	GCNGC	4 cut(s)	307, 348, 763, 902
Bme1390I	CCNGG	7 cut(s)	12, 26, 222, 440, 590, 591, 779
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	6 cut(s)	8, 122, 182, 354, 437, 791
BmrFI	CCNGG	7 cut(s)	12, 26, 222, 440, 590, 591, 779
BmsI	GCATC	1 cut(s)	857
Bpu14I	TTCGAA	1 cut(s)	376
BpuMI	CCSGG	6 cut(s)	12, 26, 440, 590, 591, 779
Bsa29I	ATCGAT	2 cut(s)	533, 851
BsaAI	YACGTR	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	398
BsaJI	CCNNGG	6 cut(s)	10, 220, 486, 588, 589, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 607
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	222
BseCI	ATCGAT	2 cut(s)	533, 851
BseDI	CCNNGG	6 cut(s)	10, 220, 486, 588, 589, 777
BseJI	GATNNNNATC	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	487, 607
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	358, 748
Bsh1236I	CGCG	1 cut(s)	427
Bsh1285I	CGRYCG	2 cut(s)	250, 909
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	789
BshVI	ATCGAT	2 cut(s)	533, 851
BsiEI	CGRYCG	2 cut(s)	250, 909
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	7 cut(s)	12, 25, 118, 157, 440, 590, 779
BslFI	GGGAC	2 cut(s)	179, 203
BslI	CCNNNNNNNGG	2 cut(s)	487, 607
BsmAI	GTCTC	3 cut(s)	95, 240, 297
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	179, 203
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	11, 125
Bsp1407I	TGTACA	1 cut(s)	856
Bsp143I	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
BspACI	CCGC	3 cut(s)	306, 749, 900
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	2 cut(s)	533, 851
BspFNI	CGCG	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	6 cut(s)	8, 122, 182, 354, 437, 791
BspPI	GGATC	4 cut(s)	119, 347, 360, 670
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	6 cut(s)	10, 220, 486, 588, 589, 777
BssMI	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	3 cut(s)	96, 438, 915
BstAUI	TGTACA	1 cut(s)	856
BstBAI	YACGTR	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	65, 360
BstFNI	CGCG	1 cut(s)	427
BstKTI	GATC	9 cut(s)	77, 109, 114, 250, 355, 402, 658, 678, 909
BstMAI	GTCTC	3 cut(s)	95, 240, 297
BstMBI	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
BstMCI	CGRYCG	2 cut(s)	250, 909
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	7 cut(s)	10, 24, 220, 438, 588, 589, 777
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	358, 748
BstX2I	RGATCY	2 cut(s)	111, 352
BstYI	RGATCY	2 cut(s)	111, 352
Bsu15I	ATCGAT	2 cut(s)	533, 851
BsuRI	GGCC	1 cut(s)	225
BsuTUI	ATCGAT	2 cut(s)	533, 851
BtsIMutI	CAGTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	224
Cfr9I	CCCGGG	1 cut(s)	589
ClaI	ATCGAT	2 cut(s)	533, 851
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	662, 857
CviAII	CATG	2 cut(s)	417, 653
CviQI	GTAC	2 cut(s)	662, 857
DdeI	CTNAG	2 cut(s)	65, 360
DpnI	GATC	9 cut(s)	76, 108, 113, 249, 354, 401, 657, 677, 908
DpnII	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
Eam1104I	CTCTTC	3 cut(s)	96, 438, 915
EarI	CTCTTC	3 cut(s)	96, 438, 915
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	11, 125
Eco32I	GATATC	1 cut(s)	784
Eco88I	CYCGRG	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	11, 125
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	2 cut(s)	420, 656
FaiI	YATR	9 cut(s)	129, 282, 284, 418, 508, 620, 654, 705, 839
FaqI	GGGAC	2 cut(s)	179, 203
FatI	CATG	2 cut(s)	416, 652
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	4 cut(s)	306, 347, 762, 901
FriOI	GRGCYC	2 cut(s)	11, 125
Fsp4HI	GCNGC	4 cut(s)	306, 347, 762, 901
FspBI	CTAG	2 cut(s)	239, 686
GluI	GCNGC	4 cut(s)	306, 347, 762, 901
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	7 cut(s)	12, 25, 118, 157, 440, 590, 779
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	420, 656
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	378, 491, 535
HpaII	CCGG	7 cut(s)	12, 25, 118, 157, 440, 590, 779
Hpy166II	GTNNAC	4 cut(s)	22, 313, 423, 683
Hpy188I	TCNGA	4 cut(s)	79, 111, 268, 393
Hpy188III	TCNNGA	6 cut(s)	43, 98, 362, 653, 718, 866
Hpy8I	GTNNAC	4 cut(s)	22, 313, 423, 683
Hpy99I	CGWCG	2 cut(s)	212, 732
HpyAV	CCTTC	3 cut(s)	366, 724, 866
HpyCH4IV	ACGT	2 cut(s)	133, 278
HpyCH4V	TGCA	1 cut(s)	633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	65, 360
HpySE526I	ACGT	2 cut(s)	133, 278
Hsp92II	CATG	2 cut(s)	420, 656
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
LmnI	GCTCC	3 cut(s)	6, 120, 186
Lsp1109I	GCAGC	2 cut(s)	358, 748
LweI	GCATC	1 cut(s)	857
MaeI	CTAG	2 cut(s)	239, 686
MaeII	ACGT	2 cut(s)	133, 278
MaeIII	GTNAC	2 cut(s)	43, 428
MalI	GATC	9 cut(s)	76, 108, 113, 249, 354, 401, 657, 677, 908
MboI	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
MboII	GAAGA	5 cut(s)	83, 84, 455, 810, 881
MflI	RGATCY	2 cut(s)	111, 352
MhlI	GDGCHC	2 cut(s)	11, 125
MluCI	AATT	4 cut(s)	31, 644, 669, 795
MluI	ACGCGT	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	6 cut(s)	207, 282, 326, 549, 595, 885
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	2 cut(s)	449, 546
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	308, 761
MspI	CCGG	7 cut(s)	12, 25, 118, 157, 440, 590, 779
MspR9I	CCNGG	7 cut(s)	12, 26, 222, 440, 590, 591, 779
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	6 cut(s)	12, 26, 440, 590, 591, 779
NdeII	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
NlaIII	CATG	2 cut(s)	420, 656
NlaIV	GGNNCC	6 cut(s)	8, 122, 182, 354, 437, 791
NmuCI	GTSAC	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	376
PagI	TCATGA	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	378, 535
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	307, 348, 763, 902
Ple19I	CGATCG	2 cut(s)	250, 909
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
Ppu21I	YACGTR	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	6 cut(s)	8, 122, 182, 354, 437, 791
PspPI	GGNCC	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PsuI	RGATCY	2 cut(s)	111, 352
PvuI	CGATCG	2 cut(s)	250, 909
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	2 cut(s)	663, 858
RsaNI	GTAC	2 cut(s)	662, 857
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	449, 546
SatI	GCNGC	4 cut(s)	306, 347, 762, 901
Sau3AI	GATC	9 cut(s)	74, 106, 111, 247, 352, 399, 655, 675, 906
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	7 cut(s)	12, 26, 222, 440, 590, 591, 779
SduI	GDGCHC	2 cut(s)	11, 125
SetI	ASST	8 cut(s)	55, 136, 274, 281, 318, 466, 716, 763
SfaNI	GCATC	1 cut(s)	857
SfcI	CTRYAG	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	376
SmaI	CCCGGG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	31, 644, 669, 795
SsiI	CCGC	3 cut(s)	306, 749, 900
SspMI	CTAG	2 cut(s)	239, 686
StyD4I	CCNGG	7 cut(s)	10, 24, 220, 438, 588, 589, 777
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	2 cut(s)	136, 281
TaqI	TCGA	9 cut(s)	210, 250, 376, 533, 708, 821, 851, 905, 909
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	4 cut(s)	31, 644, 669, 795
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	2 cut(s)	308, 903
TfiI	GAWTC	2 cut(s)	378, 535
Tru1I	TTAA	2 cut(s)	449, 546
Tru9I	TTAA	2 cut(s)	449, 546
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	346, 761
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	3 cut(s)	371, 376, 668
TspMI	CCCGGG	1 cut(s)	589
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	31, 644
XmaI	CCCGGG	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	2 cut(s)	239, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.