Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009935

Physical Location & Seq

Genomic Coordinates Forward (+)

314627 .. 315073

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG01270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGGGGCTTGGATGGTGAGCAAAAACTATTGATCAAGAAGTTGGTCAATTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTAATCAAACTTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCGAAGTAGCAAAAGTAGGAGTAGCGGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTATAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGATGCTTACCAAAAGAGGGGAAGTGCACGTAGGAAAAGGGAGAATCTTCATGGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

148

Amino Acids

17.2

Weight (kDa)

10.54

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	9 - 140	4.8e-30	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07696 ATMG01270
fragaria_vesca	FvH4_c3g00120
prunus_persica	Prupe.4G252200_v2.0.a1
rosa_chinensis	RchiOBHm_MTg0498331
rosa_laevigata	RLG00000000003 RLG00000000039 RLG00000000062 RLG00000000097 RLG00000000184 RLG00000000211 RLG00000000242 RLG00000000303 RLG00000000351 RLG00000000383 RLG00000000399 RLG00000037114 RLG00000037116
rosa_multiflora	Rmu_sc0022700.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119430
rosa_samantha	Rh1BG019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	132, 428
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	3 cut(s)	252, 268, 281
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	281, 292
AjnI	CCWGG	2 cut(s)	226, 239
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	5 cut(s)	119, 263, 287, 306, 318
AluI	AGCT	5 cut(s)	119, 263, 287, 306, 318
Alw21I	GWGCWC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	3 cut(s)	252, 268, 281
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	8, 432
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	228, 241
BclI	TGATCA	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	228, 241
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	228, 241
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	226, 227, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	351, 408
BseBI	CCWGG	2 cut(s)	228, 241
BseDI	CCNNGG	3 cut(s)	226, 227, 240
BseGI	GGATG	2 cut(s)	19, 355
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	351, 408
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	296
BseYI	CCCAGC	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	132, 428
BsiHKAI	GWGCWC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	33, 244, 273
BspACI	CCGC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	2 cut(s)	132, 428
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	252, 268, 281
BsrI	ACTGG	2 cut(s)	351, 408
BssECI	CCNNGG	3 cut(s)	226, 227, 240
BssMI	GATC	3 cut(s)	33, 244, 273
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	228, 241
BstACI	GRCGYC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	259, 319, 339
BstF5I	GGATG	2 cut(s)	19, 355
BstFNI	CGCG	2 cut(s)	132, 428
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	36, 247, 276
BstMBI	GATC	3 cut(s)	33, 244, 273
BstNI	CCWGG	2 cut(s)	228, 241
BstSCI	CCNGG	2 cut(s)	226, 239
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	2 cut(s)	132, 428
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtgZI	GCGATG	2 cut(s)	95, 147
BtsCI	GGATG	2 cut(s)	19, 355
CfoI	GCGC	1 cut(s)	430
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	58, 398
CviJI	RGCY	9 cut(s)	9, 119, 175, 239, 263, 287, 306, 318, 407
CviKI_1	RGCY	9 cut(s)	9, 119, 175, 239, 263, 287, 306, 318, 407
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	3 cut(s)	259, 319, 339
DpnI	GATC	3 cut(s)	35, 246, 275
DpnII	GATC	3 cut(s)	33, 244, 273
EcoRII	CCWGG	2 cut(s)	226, 239
FaeI	CATG	2 cut(s)	61, 401
FaiI	YATR	9 cut(s)	59, 149, 170, 179, 181, 219, 302, 309, 399
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	57, 397
FauI	CCCGC	1 cut(s)	199
FauNDI	CATATG	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	26, 362
Fsp4HI	GCNGC	1 cut(s)	285
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	61, 401
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	2 cut(s)	154, 251
HindII	GTYRAC	2 cut(s)	154, 251
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	154, 251, 374
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	154, 251, 374
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	298, 376
HpyCH4V	TGCA	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	259, 319, 339
HpySE526I	ACGT	2 cut(s)	298, 376
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	61, 401
HspAI	GCGC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	33, 244, 273
LpnPI	CCDG	7 cut(s)	129, 213, 226, 240, 253, 332, 389
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	2 cut(s)	298, 376
MalI	GATC	3 cut(s)	35, 246, 275
MboI	GATC	3 cut(s)	33, 244, 273
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	228, 241
MvaI	CCWGG	2 cut(s)	228, 241
MvnI	CGCG	2 cut(s)	132, 428
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	3 cut(s)	33, 244, 273
NlaIII	CATG	2 cut(s)	61, 401
NlaIV	GGNNCC	1 cut(s)	275
PasI	CCCWGGG	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	226, 239
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	226, 239
PspN4I	GGNNCC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	3 cut(s)	33, 244, 273
ScrFI	CCNGG	2 cut(s)	228, 241
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	9 cut(s)	70, 121, 260, 265, 289, 301, 308, 320, 379
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	226, 239
TaiI	ACGT	2 cut(s)	301, 379
TaqI	TCGA	2 cut(s)	121, 418
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	74, 98, 321, 386
VneI	GTGCAC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.