Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022700.1

Orthogroup ID

OG0009935

Physical Location & Seq

Genomic Coordinates Forward (+)

5433 .. 5870

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022700.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggggggcttggatggtgagcaaaaacaattgatcaagaagttggtcaactttcgcatgaaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgccctgaacgcaatgtaatcaaacttatggttgacgccgtagagaatataaagcccatatgcgaagtggaaaaagtaggagtagctggtactatttatgatgtccctgggattgtagccagggatcgtcaacaaactttagctattcgttggatccttgaagcagctttcaaacgacgtataagctacaggataagcttagagaaatgttcatttgatgagatactggatgcttaccgaaagaggggaattgcacgtaagaaaagggagaatcttcatagactggcttccaccaatcgaagtttcgcccatttcagatggtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

145

Amino Acids

17.11

Weight (kDa)

10.45

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07696 ATMG01270
fragaria_vesca	FvH4_c3g00120
prunus_persica	Prupe.4G252200_v2.0.a1
rosa_chinensis	RchiOBHm_MTg0498331
rosa_laevigata	RLG00000000003 RLG00000000039 RLG00000000062 RLG00000000097 RLG00000000184 RLG00000000211 RLG00000000242 RLG00000000303 RLG00000000351 RLG00000000383 RLG00000000399 RLG00000037114 RLG00000037116
rosa_multiflora	Rmu_sc0022700.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119430
rosa_samantha	Rh1BG019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	243, 259, 272
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	272, 283
AjnI	CCWGG	2 cut(s)	217, 230
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	197, 254, 278, 297, 309
AluI	AGCT	5 cut(s)	197, 254, 278, 297, 309
AlwI	GGATC	3 cut(s)	243, 259, 272
ApeKI	GCWGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	8, 423
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	219, 232
BclI	TGATCA	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	219, 232
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	219, 232
BmsI	GCATC	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	217, 218, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	342, 399
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	219, 232
BseDI	CCNNGG	3 cut(s)	217, 218, 231
BseGI	GGATG	2 cut(s)	19, 346
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	342, 399
BseXI	GCAGC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	33, 235, 264
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	243, 259, 272
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	342, 399
BssECI	CCNNGG	3 cut(s)	217, 218, 231
BssMI	GATC	3 cut(s)	33, 235, 264
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	219, 232
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	19, 346
BstKTI	GATC	3 cut(s)	36, 238, 267
BstMBI	GATC	3 cut(s)	33, 235, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	2 cut(s)	219, 232
BstSCI	CCNGG	2 cut(s)	217, 230
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	19, 346
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	9, 166, 197, 230, 254, 278, 297, 309, 398
CviKI_1	RGCY	9 cut(s)	9, 166, 197, 230, 254, 278, 297, 309, 398
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	3 cut(s)	35, 237, 266
DpnII	GATC	3 cut(s)	33, 235, 264
EcoRII	CCWGG	2 cut(s)	217, 230
FaeI	CATG	1 cut(s)	61
FaiI	YATR	8 cut(s)	59, 140, 161, 170, 172, 210, 293, 390
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	26, 353
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	3 cut(s)	49, 145, 242
HindII	GTYRAC	3 cut(s)	49, 145, 242
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	49, 145, 242
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	3 cut(s)	49, 145, 242
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	289, 367
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	2 cut(s)	289, 367
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	33, 235, 264
LpnPI	CCDG	9 cut(s)	129, 183, 204, 217, 231, 244, 286, 323, 380
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	2 cut(s)	289, 367
MalI	GATC	3 cut(s)	35, 237, 266
MboI	GATC	3 cut(s)	33, 235, 264
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	2 cut(s)	29, 360
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	219, 232
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	2 cut(s)	219, 232
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeI	CATATG	1 cut(s)	170
NdeII	GATC	3 cut(s)	33, 235, 264
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	266
PasI	CCCWGGG	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	217, 230
PspGI	CCWGG	2 cut(s)	217, 230
PspN4I	GGNNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	33, 235, 264
ScrFI	CCNGG	2 cut(s)	219, 232
SetI	ASST	8 cut(s)	70, 199, 256, 280, 292, 299, 311, 370
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	298
Sse9I	AATT	2 cut(s)	29, 360
StyD4I	CCNGG	2 cut(s)	217, 230
TaiI	ACGT	2 cut(s)	292, 370
TaqI	TCGA	1 cut(s)	409
TasI	AATT	2 cut(s)	29, 360
TfiI	GAWTC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	4 cut(s)	74, 98, 312, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.