Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0009935

Physical Location & Seq

Genomic Coordinates Reverse (-)

835688 .. 836290

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCGGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCTCGAAAACGTCCAGGTCGAAATATGGTTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAACGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23 Ribosomal_S7

Protein Analysis

132

Amino Acids

14.61

Weight (kDa)

11.36

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	1 - 125	5.1e-49	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07696 ATMG01270
fragaria_vesca	FvH4_c3g00120
prunus_persica	Prupe.4G252200_v2.0.a1
rosa_chinensis	RchiOBHm_MTg0498331
rosa_laevigata	RLG00000000003 RLG00000000039 RLG00000000062 RLG00000000097 RLG00000000184 RLG00000000211 RLG00000000242 RLG00000000303 RLG00000000351 RLG00000000383 RLG00000000399 RLG00000037114 RLG00000037116
rosa_multiflora	Rmu_sc0022700.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119430
rosa_samantha	Rh1BG019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	3 cut(s)	181, 198, 211
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	80, 197, 283
AjiI	CACGTC	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	3 cut(s)	181, 198, 211
Aor13HI	TCCGGA	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	341
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	264
BmgBI	CACGTC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	257, 295, 316
BsaAI	YACGTR	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	341
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	173, 203
BspACI	CCGC	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	3 cut(s)	181, 198, 211
BssMI	GATC	2 cut(s)	173, 203
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	176, 206
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	173, 203
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 374
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	3 cut(s)	44, 65, 377
CviKI_1	RGCY	3 cut(s)	44, 65, 377
DpnI	GATC	2 cut(s)	175, 205
DpnII	GATC	2 cut(s)	173, 203
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	70
FaiI	YATR	5 cut(s)	68, 146, 275, 332, 354
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	76, 178, 349
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	21, 295
Hpy188III	TCNNGA	2 cut(s)	140, 252
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	4 cut(s)	115, 127, 163, 259
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 374
HpySE526I	ACGT	4 cut(s)	115, 127, 163, 259
Hsp92II	CATG	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	173, 203
LpnPI	CCDG	3 cut(s)	153, 249, 276
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	3 cut(s)	257, 295, 316
MaeII	ACGT	4 cut(s)	115, 127, 163, 259
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	175, 205
MboI	GATC	2 cut(s)	173, 203
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	3 cut(s)	51, 284, 296
MlyI	GAGTC	2 cut(s)	172, 343
MnlI	CCTC	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	3 cut(s)	9, 287, 394
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	155, 374
NdeII	GATC	2 cut(s)	173, 203
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	2 cut(s)	265, 321
PfeI	GAWTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	172, 343
PpsI	GAGTC	2 cut(s)	172, 343
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	203
SaqAI	TTAA	3 cut(s)	9, 287, 394
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	173, 203
SchI	GAGTC	2 cut(s)	172, 343
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	6 cut(s)	118, 130, 166, 262, 268, 379
SfaNI	GCATC	3 cut(s)	257, 295, 316
Sse9I	AATT	3 cut(s)	51, 284, 296
SsiI	CCGC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	4 cut(s)	118, 130, 166, 262
TaqI	TCGA	4 cut(s)	61, 176, 253, 268
TasI	AATT	3 cut(s)	51, 284, 296
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	3 cut(s)	9, 287, 394
Tru9I	TTAA	3 cut(s)	9, 287, 394
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.