One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G07696 ATMG01270 |
| fragaria_vesca | FvH4_c3g00120 |
| prunus_persica | Prupe.4G252200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_MTg0498331 |
| rosa_laevigata | RLG00000000003 RLG00000000039 RLG00000000062 RLG00000000097 RLG00000000184 RLG00000000211 RLG00000000242 RLG00000000303 RLG00000000351 RLG00000000383 RLG00000000399 RLG00000037114 RLG00000037116 |
| rosa_multiflora | Rmu_sc0022700.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00119430 |
| rosa_samantha | Rh1BG019500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 144 |
| AciI | CCGC | 1 cut(s) | 81 |
| AclWI | GGATC | 3 cut(s) | 91, 108, 121 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 144 |
| AflIII | ACRYGT | 1 cut(s) | 73 |
| AgsI | TTSAA | 2 cut(s) | 107, 193 |
| AjiI | CACGTC | 1 cut(s) | 74 |
| AjnI | CCWGG | 1 cut(s) | 172 |
| AluBI | AGCT | 1 cut(s) | 287 |
| AluI | AGCT | 1 cut(s) | 287 |
| Alw26I | GTCTC | 1 cut(s) | 251 |
| AlwI | GGATC | 3 cut(s) | 91, 108, 121 |
| ApeKI | GCWGC | 1 cut(s) | 218 |
| BamHI | GGATCC | 1 cut(s) | 113 |
| BbvI | GCAGC | 1 cut(s) | 205 |
| BciT130I | CCWGG | 1 cut(s) | 174 |
| BcoDI | GTCTC | 1 cut(s) | 251 |
| BisI | GCNGC | 1 cut(s) | 219 |
| BlsI | GCNGC | 1 cut(s) | 220 |
| Bme1390I | CCNGG | 1 cut(s) | 174 |
| BmgBI | CACGTC | 1 cut(s) | 74 |
| BmiI | GGNNCC | 1 cut(s) | 115 |
| BmrFI | CCNGG | 1 cut(s) | 174 |
| BmsI | GCATC | 3 cut(s) | 167, 205, 226 |
| BsaAI | YACGTR | 1 cut(s) | 38 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 144 |
| BseBI | CCWGG | 1 cut(s) | 174 |
| BseGI | GGATG | 1 cut(s) | 220 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 144 |
| BseXI | GCAGC | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 144 |
| BsmAI | GTCTC | 1 cut(s) | 251 |
| Bsp143I | GATC | 2 cut(s) | 83, 113 |
| BspACI | CCGC | 1 cut(s) | 81 |
| BspLI | GGNNCC | 1 cut(s) | 115 |
| BspPI | GGATC | 3 cut(s) | 91, 108, 121 |
| BssMI | GATC | 2 cut(s) | 83, 113 |
| Bst2UI | CCWGG | 1 cut(s) | 174 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstBAI | YACGTR | 1 cut(s) | 38 |
| BstF5I | GGATG | 1 cut(s) | 220 |
| BstKTI | GATC | 2 cut(s) | 86, 116 |
| BstMAI | GTCTC | 1 cut(s) | 251 |
| BstMBI | GATC | 2 cut(s) | 83, 113 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 65, 284 |
| BstNI | CCWGG | 1 cut(s) | 174 |
| BstSCI | CCNGG | 1 cut(s) | 172 |
| BstV1I | GCAGC | 1 cut(s) | 205 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BtgZI | GCGATG | 1 cut(s) | 249 |
| BtrI | CACGTC | 1 cut(s) | 74 |
| BtsCI | GGATG | 1 cut(s) | 220 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 211, 246 |
| CviJI | RGCY | 1 cut(s) | 287 |
| CviKI_1 | RGCY | 1 cut(s) | 287 |
| DpnI | GATC | 2 cut(s) | 85, 115 |
| DpnII | GATC | 2 cut(s) | 83, 113 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 96 |
| EcoRII | CCWGG | 1 cut(s) | 172 |
| FaiI | YATR | 4 cut(s) | 56, 185, 242, 264 |
| Fnu4HI | GCNGC | 1 cut(s) | 219 |
| FokI | GGATG | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 1 cut(s) | 219 |
| GluI | GCNGC | 1 cut(s) | 219 |
| HinfI | GANTC | 2 cut(s) | 88, 259 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| Hpy188III | TCNNGA | 2 cut(s) | 50, 162 |
| HpyCH4IV | ACGT | 4 cut(s) | 25, 37, 73, 169 |
| HpyCH4V | TGCA | 1 cut(s) | 293 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 65, 284 |
| HpySE526I | ACGT | 4 cut(s) | 25, 37, 73, 169 |
| Kzo9I | GATC | 2 cut(s) | 83, 113 |
| LpnPI | CCDG | 3 cut(s) | 30, 159, 186 |
| Lsp1109I | GCAGC | 1 cut(s) | 205 |
| LweI | GCATC | 3 cut(s) | 167, 205, 226 |
| MaeII | ACGT | 4 cut(s) | 25, 37, 73, 169 |
| MaeIII | GTNAC | 1 cut(s) | 43 |
| MalI | GATC | 2 cut(s) | 85, 115 |
| MboI | GATC | 2 cut(s) | 83, 113 |
| MboII | GAAGA | 1 cut(s) | 266 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MluCI | AATT | 2 cut(s) | 194, 206 |
| MlyI | GAGTC | 2 cut(s) | 82, 253 |
| MnlI | CCTC | 1 cut(s) | 268 |
| MseI | TTAA | 2 cut(s) | 197, 304 |
| MspR9I | CCNGG | 1 cut(s) | 174 |
| MvaI | CCWGG | 1 cut(s) | 174 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 65, 284 |
| NdeII | GATC | 2 cut(s) | 83, 113 |
| NlaIV | GGNNCC | 1 cut(s) | 115 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 175, 231 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 144 |
| PkrI | GCNGC | 1 cut(s) | 220 |
| PleI | GAGTC | 2 cut(s) | 82, 253 |
| PpsI | GAGTC | 2 cut(s) | 82, 253 |
| Ppu21I | YACGTR | 1 cut(s) | 38 |
| Psp6I | CCWGG | 1 cut(s) | 172 |
| PspGI | CCWGG | 1 cut(s) | 172 |
| PspN4I | GGNNCC | 1 cut(s) | 115 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| SaqAI | TTAA | 2 cut(s) | 197, 304 |
| SatI | GCNGC | 1 cut(s) | 219 |
| Sau3AI | GATC | 2 cut(s) | 83, 113 |
| SchI | GAGTC | 2 cut(s) | 82, 253 |
| ScrFI | CCNGG | 1 cut(s) | 174 |
| SetI | ASST | 7 cut(s) | 19, 28, 40, 76, 172, 178, 289 |
| SfaNI | GCATC | 3 cut(s) | 167, 205, 226 |
| Sse9I | AATT | 2 cut(s) | 194, 206 |
| SsiI | CCGC | 1 cut(s) | 81 |
| StyD4I | CCNGG | 1 cut(s) | 172 |
| TaiI | ACGT | 4 cut(s) | 28, 40, 76, 172 |
| TaqI | TCGA | 3 cut(s) | 86, 163, 178 |
| TasI | AATT | 2 cut(s) | 194, 206 |
| Tru1I | TTAA | 2 cut(s) | 197, 304 |
| Tru9I | TTAA | 2 cut(s) | 197, 304 |
| TseI | GCWGC | 1 cut(s) | 218 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 144 |