Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009935

Physical Location & Seq

Genomic Coordinates Reverse (-)

88489248 .. 88489577

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCGGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCTCGAAAACGTCCAGGTCGAAATATGGTTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAACGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23 Ribosomal_S7

Protein Analysis

110

Amino Acids

12.02

Weight (kDa)

11.39

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	1 - 103	3.5e-38	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07696 ATMG01270
fragaria_vesca	FvH4_c3g00120
prunus_persica	Prupe.4G252200_v2.0.a1
rosa_chinensis	RchiOBHm_MTg0498331
rosa_laevigata	RLG00000000003 RLG00000000039 RLG00000000062 RLG00000000097 RLG00000000184 RLG00000000211 RLG00000000242 RLG00000000303 RLG00000000351 RLG00000000383 RLG00000000399 RLG00000037114 RLG00000037116
rosa_multiflora	Rmu_sc0022700.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119430
rosa_samantha	Rh1BG019500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	3 cut(s)	115, 132, 145
AfiI	CCNNNNNNNGG	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	14, 131, 217
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	3 cut(s)	115, 132, 145
Aor13HI	TCCGGA	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	191, 229, 250
BsaAI	YACGTR	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	107, 137
BspACI	CCGC	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	3 cut(s)	115, 132, 145
BssMI	GATC	2 cut(s)	107, 137
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	110, 140
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	107, 137
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 308
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviJI	RGCY	1 cut(s)	311
CviKI_1	RGCY	1 cut(s)	311
DpnI	GATC	2 cut(s)	109, 139
DpnII	GATC	2 cut(s)	107, 137
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	196
FaiI	YATR	4 cut(s)	80, 209, 266, 288
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	243
HapII	CCGG	1 cut(s)	74
HinfI	GANTC	3 cut(s)	10, 112, 283
HpaII	CCGG	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	74, 186
HpyCH4IV	ACGT	4 cut(s)	49, 61, 97, 193
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 308
HpySE526I	ACGT	4 cut(s)	49, 61, 97, 193
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	107, 137
LpnPI	CCDG	3 cut(s)	87, 183, 210
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	3 cut(s)	191, 229, 250
MaeII	ACGT	4 cut(s)	49, 61, 97, 193
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	109, 139
MboI	GATC	2 cut(s)	107, 137
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	2 cut(s)	218, 230
MlyI	GAGTC	2 cut(s)	106, 277
MnlI	CCTC	1 cut(s)	292
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	2 cut(s)	221, 328
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	89, 308
NdeII	GATC	2 cut(s)	107, 137
NlaIV	GGNNCC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	199, 255
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	106, 277
PpsI	GAGTC	2 cut(s)	106, 277
Ppu21I	YACGTR	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	221, 328
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	107, 137
SchI	GAGTC	2 cut(s)	106, 277
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	6 cut(s)	52, 64, 100, 196, 202, 313
SfaNI	GCATC	3 cut(s)	191, 229, 250
Sse9I	AATT	2 cut(s)	218, 230
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	196
TaiI	ACGT	4 cut(s)	52, 64, 100, 196
TaqI	TCGA	3 cut(s)	110, 187, 202
TasI	AATT	2 cut(s)	218, 230
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	221, 328
Tru9I	TTAA	2 cut(s)	221, 328
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.