FvH4_1g00890

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
439577 .. 443849
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00890.t2

Sequence Viewer

Length: 1917 bp
ATGGCGAGAAGACCTCTCGCTCTTCAGCTATGGATCTCTCTGTGCCTTTCGCTCCTTCTTCGTGTTCGGTGCTTCTACCTCCCTGGTGTCGCGCCTCAGGATTTTATGCACGGAGTTCCCTTAAATGTGAAGGTGAACAAACTAACCTCTACAAAAACTCAACTTCCTTACTCATTCTATTCCCTCCCATACTGTCGTCCAGAGCATATAATTGACAGTGCAGAGAATCTTGGGGAAGTTCTTCGTGGTGATCGCATTGAAAACTCTCCTTACGAGTTCAAAATGCGAGAGCCACAAATGTGCAGTGTTGCATGTCGTATCATTCTTAATGCAAAGACTGCAAAGGAATTTAAAGAAAAGATAGATGATGAGTATCGGGTGAACATGATTCTGGATAATCTCCCTCTGGTTGTTCCTATACCAAGGCATGATCAGGAAAATTCCTTGGTTTATCAACATGGCTTTCATGTTGGTCTAAGAGGGCAATATGCTGGGAACAAGGATGAAAAGCATTTCATTAACAATCACTTAACTTTTATGGTCAAATATCACAAAGATCCAATGACAGAAGCTGCCAGGATAGTTGGGTTTGAGGTCAAACCTTTCAGTGTTAGGCATGAATATGAAGGTGAGTGGAGTGGAAAGACACGTTTAACAACTTGTGATCCCCATGCAAAGCGAATGGTCACCAGCTCTGAATCTCCTCAAGAGGTTGATGATAAAAAGGAAATTATATTCACATATGATGTTGATTTCCAGGAGAGTGATGTGAAGTGGGCATCTCGCTGGGACACATATCTTCTGATGGCTGATGATCAAATCCACTGGTTCTCAATTGTTAATTCTCTAATGATTGTTCTTTTCTTATCGGGCATGGTAGCTATGATCATGTTGCGGACACTTTACCGGGATATCTCCAAGTACAACCAACTGGAGACCCAAGAAGAAGCCCAAGAAGAGACGGGATGGAAACTGGTCCATGGTGACGTGTTCAGACCTCCAGTAAACTCAGATCTACTGTGCGTGTATGTTGGCACAGGTGTTCAGTTCTTCGGGATGATTCTTGTCACTATGCTCTTTGCTGTGCTTGGATTCCTCTCTCCTTCAAATCGTGGTGGGCTGATGACAGCCATGCTCCTCCTCTGGGTCTTTATGGGTCTTTTTGGTGGGTACGCTACAGTTCGTCTCCACAAGTTGTTTAAGGGAACAGAGTGGAAGAAAATCACTCTCAAAACAGCCTTCATGTTCCCTGCAGTAGTGTTTTCCATTTTCTTTGTCTTGAATGCTCTTATCTGGGGTGAAAAGTCATCTGGGGCAGTGCCATTTGGAACCATGTTTGCTCTGGTATTTTTATGGTTCGGCATTTCAGTTCCGCTTATATTTGTTGGTGCCTATGTGGGCTATAGGAAGCCAGCGATTGAGGATCCTGTAAAAACCAACAAGATCCCTAGGCAAGTGCCAGAACAGGCTTGGTACATGCATCCAGTTTTCTCTATCCTAATTGGAGGCATACTGCCATTTGGTGCTGTCTTTATTGAGCTGTTCTTCATCCTTACCTCAATATGGTTGCATCAGTTCTATTATATATTTGGATTCCTTTTCATCGTCTTCATTATCCTCGTCATCACTTGTGCGGAGATCACCATTGTACTGTGCTACTTCCAGCTGTGCAGTGAAGACTACAATTGGTGGTGGAGATCGTATTTGACTTCAGGCTCATCAGCATTGTATCTTTTCCTATATGCTGCCTTTTACTTCTTCACTAAGCTTGACATCAAGAAGCCAGTGTCTGGAGCTTTGTACTTCGGGTATATGCTCATTGCTTCATATTCCTTCTTCGTGCTGACTGGTACAATTGGGTTCTATGCATGCTTCTGGTTTACTAGGCTCATATATTCATCTGTGAAGATCGACTGA

Protein Analysis

639

Amino Acids

73.69

Weight (kDa)

7.89

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 51 - 588 5.8e-220 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010668)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1388
AccB7I CCANNNNNTGG 1 cut(s) 1790
AccII CGCG 1 cut(s) 92
AciI CCGC 3 cut(s) 895, 1373, 1634
AclWI GGATC 6 cut(s) 41, 551, 659, 1418, 1431, 1438
AcsI RAATTY 2 cut(s) 347, 439
AcuI CTGAAG 2 cut(s) 8, 1695
AfaI GTAC 6 cut(s) 923, 1172, 1475, 1650, 1802, 1852
AfiI CCNNNNNNNGG 3 cut(s) 1144, 1563, 1790
AflIII ACRYGT 2 cut(s) 647, 987
AgsI TTSAA 4 cut(s) 260, 280, 1107, 1282
AjiI CACGTC 1 cut(s) 988
AjnI CCWGG 3 cut(s) 82, 575, 756
AleI CACNNNNGTG 1 cut(s) 298
AluBI AGCT 8 cut(s) 28, 572, 693, 881, 1540, 1666, 1768, 1796
AluI AGCT 8 cut(s) 28, 572, 693, 881, 1540, 1666, 1768, 1796
Alw26I GTCTC 3 cut(s) 929, 953, 1190
AlwI GGATC 6 cut(s) 41, 551, 659, 1418, 1431, 1438
AlwNI CAGNNNCTG 2 cut(s) 572, 1790
ApeKI GCWGC 2 cut(s) 572, 1745
ApoI RAATTY 2 cut(s) 347, 439
Asp700I GAANNNNTTC 1 cut(s) 240
AspA2I CCTAGG 1 cut(s) 1448
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 976
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 8 cut(s) 145, 260, 391, 641, 679, 995, 1310, 1633
AvaII GGWCC 1 cut(s) 976
AvrII CCTAGG 1 cut(s) 1448
AxyI CCTNAGG 1 cut(s) 96
BamHI GGATCC 1 cut(s) 1423
BanI GGYRCC 1 cut(s) 1388
BbsI GAAGAC 3 cut(s) 16, 1600, 1683
BbvI GCAGC 2 cut(s) 559, 1732
BccI CCATC 2 cut(s) 799, 960
BciT130I CCWGG 3 cut(s) 84, 577, 758
BclI TGATCA 3 cut(s) 430, 814, 885
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 3 cut(s) 929, 953, 1190
BfaI CTAG 2 cut(s) 1449, 1884
BfmI CTRYAG 3 cut(s) 1176, 1251, 1402
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 2 cut(s) 573, 1746
BlnI CCTAGG 1 cut(s) 1448
BlsI GCNGC 2 cut(s) 574, 1747
Bme1390I CCNGG 4 cut(s) 84, 577, 758, 908
Bme18I GGWCC 1 cut(s) 976
BmgBI CACGTC 1 cut(s) 988
BmgT120I GGNCC 1 cut(s) 976
BmiI GGNNCC 3 cut(s) 1330, 1390, 1425
BmrFI CCNGG 4 cut(s) 84, 577, 758, 908
BmsI GCATC 3 cut(s) 788, 1489, 1579
BpiI GAAGAC 3 cut(s) 16, 1600, 1683
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 3 cut(s) 953, 984, 1812
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 5 cut(s) 82, 422, 444, 979, 1448
Bsc4I CCNNNNNNNGG 3 cut(s) 1144, 1563, 1790
Bse1I ACTGG 7 cut(s) 830, 936, 978, 1001, 1484, 1784, 1852
Bse21I CCTNAGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 1818
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 3 cut(s) 84, 577, 758
BseDI CCNNGG 5 cut(s) 82, 422, 444, 979, 1448
BseGI GGATG 5 cut(s) 508, 971, 1062, 1480, 1548
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 1144, 1563, 1790
BseMI GCAATG 1 cut(s) 1818
BseMII CTCAG 2 cut(s) 110, 1023
BseNI ACTGG 7 cut(s) 830, 936, 978, 1001, 1484, 1784, 1852
BseRI GAGGAG 3 cut(s) 693, 1127, 1130
BseXI GCAGC 2 cut(s) 559, 1732
BseYI CCCAGC 2 cut(s) 491, 786
BsgI GTGCAG 3 cut(s) 240, 322, 1690
Bsh1236I CGCG 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 1388
BsiSI CCGG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 3 cut(s) 1144, 1563, 1790
BsmAI GTCTC 3 cut(s) 929, 953, 1190
BsmBI CGTCTC 2 cut(s) 953, 1190
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 1288
Bso31I GGTCTC 1 cut(s) 929
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 3 cut(s) 895, 1373, 1634
BspCNI CTCAG 2 cut(s) 109, 1022
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 1330, 1390, 1425
BspMAI CTGCAG 1 cut(s) 1255
BspPI GGATC 6 cut(s) 41, 551, 659, 1418, 1431, 1438
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 1388
BspTNI GGTCTC 1 cut(s) 929
BsrDI GCAATG 1 cut(s) 1818
BsrI ACTGG 7 cut(s) 830, 936, 978, 1001, 1484, 1784, 1852
BssECI CCNNGG 5 cut(s) 82, 422, 444, 979, 1448
BssT1I CCWWGG 4 cut(s) 422, 444, 979, 1448
Bst2UI CCWGG 3 cut(s) 84, 577, 758
Bst4CI ACNGT 5 cut(s) 194, 218, 1020, 1180, 1653
Bst6I CTCTTC 2 cut(s) 27, 951
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 1413, 1870
BstDEI CTNAG 4 cut(s) 96, 476, 1009, 1764
BstDSI CCRYGG 1 cut(s) 979
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 5 cut(s) 508, 971, 1062, 1480, 1548
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 94
BstMAI GTCTC 3 cut(s) 929, 953, 1190
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 3 cut(s) 84, 577, 758
BstNSI RCATGY 3 cut(s) 315, 1480, 1872
BstPI GGTNACC 1 cut(s) 685
BstSCI CCNGG 4 cut(s) 82, 575, 756, 906
BstSFI CTRYAG 3 cut(s) 1176, 1251, 1402
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 559, 1732
BstV2I GAAGAC 3 cut(s) 16, 1600, 1683
BstX2I RGATCY 5 cut(s) 33, 556, 1012, 1423, 1443
BstYI RGATCY 5 cut(s) 33, 556, 1012, 1423, 1443
Bsu36I CCTNAGG 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 979
BtrI CACGTC 1 cut(s) 988
BtsCI GGATG 5 cut(s) 508, 971, 1062, 1480, 1548
BtsI GCAGTG 3 cut(s) 310, 1323, 1678
BtsIMutI CAGTG 7 cut(s) 223, 310, 613, 823, 1323, 1678, 1791
Cac8I GCNNGC 2 cut(s) 1413, 1870
CaiI CAGNNNCTG 2 cut(s) 572, 1790
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 976
Csp6I GTAC 6 cut(s) 922, 1171, 1474, 1649, 1801, 1851
CviQI GTAC 6 cut(s) 922, 1171, 1474, 1649, 1801, 1851
DdeI CTNAG 4 cut(s) 96, 476, 1009, 1764
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 27, 951
EarI CTCTTC 2 cut(s) 27, 951
Eco130I CCWWGG 4 cut(s) 422, 444, 979, 1448
Eco31I GGTCTC 1 cut(s) 929
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 976
Eco57I CTGAAG 2 cut(s) 8, 1695
Eco81I CCTNAGG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 82, 575, 756
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 4 cut(s) 422, 444, 979, 1448
EcoT22I ATGCAT 2 cut(s) 1482, 1870
ErhI CCWWGG 4 cut(s) 422, 444, 979, 1448
Esp3I CGTCTC 2 cut(s) 953, 1190
FaqI GGGAC 1 cut(s) 803
FauNDI CATATG 1 cut(s) 742
FbaI TGATCA 3 cut(s) 430, 814, 885
Fnu4HI GCNGC 2 cut(s) 573, 1746
FokI GGATG 5 cut(s) 515, 978, 1069, 1467, 1535
Fsp4HI GCNGC 2 cut(s) 573, 1746
FspBI CTAG 2 cut(s) 1449, 1884
GlaI GCGC 1 cut(s) 93
GluI GCNGC 2 cut(s) 573, 1746
GsaI CCCAGC 2 cut(s) 495, 790
GsuI CTGGAG 3 cut(s) 953, 984, 1812
HapII CCGG 1 cut(s) 907
HhaI GCGC 1 cut(s) 94
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 1766
HinfI GANTC 6 cut(s) 226, 388, 698, 1060, 1092, 1593
HpaII CCGG 1 cut(s) 907
HphI GGTGA 8 cut(s) 145, 260, 391, 641, 679, 995, 1310, 1633
Hpy166II GTNNAC 4 cut(s) 136, 382, 1006, 1881
Hpy188I TCNGA 4 cut(s) 697, 804, 995, 1012
Hpy188III TCNNGA 9 cut(s) 98, 200, 392, 434, 707, 1054, 1279, 1777, 1791
Hpy8I GTNNAC 4 cut(s) 136, 382, 1006, 1881
HpyAV CCTTC 6 cut(s) 65, 124, 620, 1113, 1249, 1843
HpyCH4III ACNGT 5 cut(s) 194, 218, 1020, 1180, 1653
HpyCH4IV ACGT 2 cut(s) 649, 987
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 4 cut(s) 96, 476, 1009, 1764
HpySE526I ACGT 2 cut(s) 649, 987
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 3 cut(s) 430, 814, 885
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 57, 1140, 1793
Lsp1109I GCAGC 2 cut(s) 559, 1732
LweI GCATC 3 cut(s) 788, 1489, 1579
MaeI CTAG 2 cut(s) 1449, 1884
MaeII ACGT 2 cut(s) 649, 987
MaeIII GTNAC 3 cut(s) 685, 983, 1066
MfeI CAATTG 3 cut(s) 834, 1684, 1854
MflI RGATCY 5 cut(s) 33, 556, 1012, 1423, 1443
MluCI AATT 9 cut(s) 210, 347, 439, 729, 834, 841, 1500, 1684, 1854
Mph1103I ATGCAT 2 cut(s) 1482, 1870
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 8 cut(s) 122, 327, 351, 519, 530, 653, 840, 1200
MslI CAYNNNNRTG 2 cut(s) 298, 621
MspA1I CMGCKG 1 cut(s) 1666
MspI CCGG 1 cut(s) 907
MspR9I CCNGG 4 cut(s) 84, 577, 758, 908
MunI CAATTG 3 cut(s) 834, 1684, 1854
Mva1269I GAATGC 1 cut(s) 1288
MvaI CCWGG 3 cut(s) 84, 577, 758
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 1 cut(s) 979
NdeI CATATG 1 cut(s) 742
NlaIV GGNNCC 3 cut(s) 1330, 1390, 1425
NmuCI GTSAC 3 cut(s) 685, 983, 1066
NsiI ATGCAT 2 cut(s) 1482, 1870
NspI RCATGY 3 cut(s) 315, 1480, 1872
OliI CACNNNNGTG 1 cut(s) 298
PaeI GCATGC 1 cut(s) 1872
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 1288
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 6 cut(s) 226, 388, 698, 1060, 1092, 1593
PflMI CCANNNNNTGG 1 cut(s) 1790
PfoI TCCNGGA 1 cut(s) 756
PkrI GCNGC 2 cut(s) 574, 1747
Psp6I CCWGG 3 cut(s) 82, 575, 756
PspEI GGTNACC 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 491, 786
PspGI CCWGG 3 cut(s) 82, 575, 756
PspN4I GGNNCC 3 cut(s) 1330, 1390, 1425
PspPI GGNCC 1 cut(s) 976
PstI CTGCAG 1 cut(s) 1255
PstNI CAGNNNCTG 2 cut(s) 572, 1790
PsuI RGATCY 5 cut(s) 33, 556, 1012, 1423, 1443
PvuII CAGCTG 1 cut(s) 1666
RsaI GTAC 6 cut(s) 923, 1172, 1475, 1650, 1802, 1852
RsaNI GTAC 6 cut(s) 922, 1171, 1474, 1649, 1801, 1851
RseI CAYNNNNRTG 2 cut(s) 298, 621
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 8 cut(s) 122, 327, 351, 519, 530, 653, 840, 1200
SatI GCNGC 2 cut(s) 573, 1746
Sau96I GGNCC 1 cut(s) 976
ScrFI CCNGG 4 cut(s) 84, 577, 758, 908
SfaNI GCATC 3 cut(s) 788, 1489, 1579
SfcI CTRYAG 3 cut(s) 1176, 1251, 1402
SinI GGWCC 1 cut(s) 976
SmiMI CAYNNNNRTG 2 cut(s) 298, 621
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SphI GCATGC 1 cut(s) 1872
Sse9I AATT 9 cut(s) 210, 347, 439, 729, 834, 841, 1500, 1684, 1854
SsiI CCGC 3 cut(s) 895, 1373, 1634
SspMI CTAG 2 cut(s) 1449, 1884
StyD4I CCNGG 4 cut(s) 82, 575, 756, 906
StyI CCWWGG 4 cut(s) 422, 444, 979, 1448
TaaI ACNGT 5 cut(s) 194, 218, 1020, 1180, 1653
TaiI ACGT 2 cut(s) 652, 990
TaqI TCGA 1 cut(s) 1911
TasI AATT 9 cut(s) 210, 347, 439, 729, 834, 841, 1500, 1684, 1854
TatI WGTACW 3 cut(s) 921, 1648, 1800
TfiI GAWTC 6 cut(s) 226, 388, 698, 1060, 1092, 1593
Tru1I TTAA 8 cut(s) 122, 327, 351, 519, 530, 653, 840, 1200
Tru9I TTAA 8 cut(s) 122, 327, 351, 519, 530, 653, 840, 1200
TscAI CASTG 7 cut(s) 223, 310, 613, 830, 1323, 1678, 1791
TseFI GTSAC 3 cut(s) 685, 983, 1066
TseI GCWGC 2 cut(s) 572, 1745
Tsp45I GTSAC 3 cut(s) 685, 983, 1066
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 7 cut(s) 223, 310, 613, 830, 1323, 1678, 1791
Van91I CCANNNNNTGG 1 cut(s) 1790
VpaK11BI GGWCC 1 cut(s) 976
XapI RAATTY 2 cut(s) 347, 439
XceI RCATGY 3 cut(s) 315, 1480, 1872
XcmI CCANNNNNNNNNTGG 2 cut(s) 1339, 1467
XmaJI CCTAGG 1 cut(s) 1448
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 2 cut(s) 1449, 1884
Zsp2I ATGCAT 2 cut(s) 1482, 1870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.