Rh2DG013200

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
714361 .. 718297
3937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG013200.1

Sequence Viewer

Length: 1356 bp
ATGACAGAATCTGCCAGGATTGTTGGGTTTGAGGTCAAACCGTTCAGTGTTAGGCATGCATACGAAGGTGAGTGGAGTGGGAAGACGCGTCTAACAACCTGTGACCCCCATGCAAAGCGCATGGTTACCAGCTCCGAATCTCCTCAAGAGGTTGAAGATAAAATGGAAATTATATTCACATATGATGTTGACTTCCAGGAGAGTGATGTGAAGTGGGCATCTCGCTGGGACACATATCTTCTGATGGCTGATGATCAAATCCACTGGTTCTCAATTGTTAATTCTTTAATGATTGTTCTTTTCTTATCGGGCATGGTAGCTATGATCATGTTGCGGACACTTTACCGGGATATCTCCAAGTACAACCAACTGGAGACCCAAGAAGAAGCCCAAGAAGAGACAGGATGGAAATTGGTCCATGGTGACGTGTTCAGACCTCCAGTAAACTCAGATCTACTGTGCGTGTATGTTGGCACAGGTGTTCAGTTCTTTGGGATGATTGTTGTCACTATGCTCTTTGCTGTCCTTGGATTCCTCTCCCCTTCAAATCGTGGTGGGCTGATGACGGCCATGCTCCTCCTCTGGGTCTTTATGGGTCTTTTTGGTGGATATGCTTCAGTCCGTCTGTACAAGTTGTTTAAGGGAACAGAATGGAAGAAAATCTCTCTCAAAACAGCCTTCATGTTCCCTGCAGTAGTGTTTTCCATTTTCTTTGTCTTGAATGCTCTTATCTGGGGTGAGAAGTCGTCTGGGGCAGTGCCATTTGGAACCATGTTTGCTCTGGTATTTTTATGGTTTGGCATTTCAGTTCCACTTATATTTGTTGGTGCCTATGTGGGCTTTAGGAAGCCAGCGATTGAGGATCCTGTGAAAACCAACAAGATCCCCAGGCAAGTGCCAGAACAGGCTTGGTACATGCATCCAGTTTTCTCTATCTTAATTGGAGGCATACTGCCATTTGGCGCTGTCTTTATTGAGCTCTTCTTCATCCTTACCTCAATATGGTTGCATCAGTTCTATTACATATTTGGATTCCTATTCATCGTCTTCATTATCCTCATCATCACTTGTGCGGAGATCACCATTGTGCTATGCTACTTCCAGCTGTGCAGTGAAGACTACTTTTGGTGGTGGAGATCGTATTTGACTTCAGGGTCATCAGCACTGTATCTTTTCCTATATGCTGCCTTTTACTTCTTCACCAAGCTTGACATTAAGAAGCCAGTATCTGGAGCCTTATACTTCGGGTATATGCTCATTGCTTCATATTCTTTCTTTGTGCTGACCGGTACAATCGGTTTCTACGCATGCTTCTGGTTTACTAGGCTCATATATTCATCTGTGAAGATCGACTGA

Protein Analysis

451

Amino Acids

51.94

Weight (kDa)

6.34

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 4 - 407 6.5e-175 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010668)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1153
AccB1I GGYRCC 1 cut(s) 827
AccB7I CCANNNNNTGG 1 cut(s) 1229
AccII CGCG 1 cut(s) 88
AciI CCGC 2 cut(s) 334, 1073
AclWI GGATC 3 cut(s) 857, 870, 877
AcoI YGGCCR 1 cut(s) 567
AcuI CTGAAG 2 cut(s) 600, 1134
AfaI GTAC 4 cut(s) 362, 629, 914, 1291
AfiI CCNNNNNNNGG 3 cut(s) 583, 1002, 1229
AflIII ACRYGT 2 cut(s) 86, 426
AgeI ACCGGT 1 cut(s) 1286
AgsI TTSAA 3 cut(s) 155, 546, 721
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 3 cut(s) 14, 195, 887
AleI CACNNNNGTG 1 cut(s) 1085
AluBI AGCT 5 cut(s) 132, 320, 979, 1105, 1207
AluI AGCT 5 cut(s) 132, 320, 979, 1105, 1207
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 368, 392
AlwI GGATC 3 cut(s) 857, 870, 877
AlwNI CAGNNNCTG 2 cut(s) 11, 1229
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 1 cut(s) 1184
AsiGI ACCGGT 1 cut(s) 1286
AspLEI GCGC 2 cut(s) 120, 965
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 5 cut(s) 80, 434, 749, 1072, 1192
AvaII GGWCC 1 cut(s) 415
BamHI GGATCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 827
BanII GRGCYC 1 cut(s) 981
BbsI GAAGAC 3 cut(s) 89, 1039, 1122
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 1 cut(s) 1171
BccI CCATC 2 cut(s) 238, 399
BceAI ACGGC 1 cut(s) 582
BciT130I CCWGG 3 cut(s) 16, 197, 889
BclI TGATCA 2 cut(s) 253, 324
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 368, 392
BfaI CTAG 1 cut(s) 1323
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 966
BglII AGATCT 1 cut(s) 451
BisI GCNGC 1 cut(s) 1185
BlsI GCNGC 1 cut(s) 1186
Bme1390I CCNGG 4 cut(s) 16, 197, 347, 889
Bme18I GGWCC 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 4 cut(s) 769, 829, 864, 1234
BmrFI CCNGG 4 cut(s) 16, 197, 347, 889
BmsI GCATC 3 cut(s) 227, 928, 1018
BpiI GAAGAC 3 cut(s) 89, 1039, 1122
BpmI CTGGAG 3 cut(s) 392, 423, 1251
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 418, 526, 887
BsaWI WCCGGW 1 cut(s) 1286
Bsc4I CCNNNNNNNGG 3 cut(s) 583, 1002, 1229
Bse118I RCCGGY 1 cut(s) 1286
Bse1I ACTGG 5 cut(s) 269, 375, 440, 923, 1223
Bse3DI GCAATG 1 cut(s) 1257
BseBI CCWGG 3 cut(s) 16, 197, 889
BseDI CCNNGG 3 cut(s) 418, 526, 887
BseGI GGATG 4 cut(s) 410, 501, 919, 987
BseLI CCNNNNNNNGG 3 cut(s) 583, 1002, 1229
BseMI GCAATG 1 cut(s) 1257
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 5 cut(s) 269, 375, 440, 923, 1223
BseRI GAGGAG 3 cut(s) 132, 566, 569
BseXI GCAGC 1 cut(s) 1171
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 1129
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 827
BshTI ACCGGT 1 cut(s) 1286
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 346, 1287
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 583, 1002, 1229
BsmAI GTCTC 2 cut(s) 368, 392
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 2 cut(s) 334, 1073
BspANI GGCC 1 cut(s) 569
BspCNI CTCAG 1 cut(s) 461
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 4 cut(s) 769, 829, 864, 1234
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 3 cut(s) 857, 870, 877
BspQI GCTCTTC 1 cut(s) 986
BspT107I GGYRCC 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 1257
BsrFI RCCGGY 1 cut(s) 1286
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 5 cut(s) 269, 375, 440, 923, 1223
BssAI RCCGGY 1 cut(s) 1286
BssECI CCNNGG 3 cut(s) 418, 526, 887
BssMI GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
BssT1I CCWWGG 2 cut(s) 418, 526
Bst2UI CCWGG 3 cut(s) 16, 197, 889
Bst4CI ACNGT 3 cut(s) 42, 459, 1167
Bst6I CTCTTC 2 cut(s) 390, 986
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 3 cut(s) 57, 852, 1309
BstDEI CTNAG 1 cut(s) 448
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 4 cut(s) 410, 501, 919, 987
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 2 cut(s) 120, 965
BstKTI GATC 8 cut(s) 256, 327, 454, 865, 885, 1080, 1139, 1350
BstMAI GTCTC 2 cut(s) 368, 392
BstMBI GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
BstNI CCWGG 3 cut(s) 16, 197, 889
BstNSI RCATGY 3 cut(s) 59, 919, 1311
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 4 cut(s) 14, 195, 345, 887
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 1171
BstV2I GAAGAC 3 cut(s) 89, 1039, 1122
BstX2I RGATCY 3 cut(s) 451, 862, 882
BstYI RGATCY 3 cut(s) 451, 862, 882
BsuRI GGCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 418
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 4 cut(s) 410, 501, 919, 987
BtsI GCAGTG 2 cut(s) 762, 1117
BtsIMutI CAGTG 5 cut(s) 52, 262, 762, 1117, 1163
Cac8I GCNNGC 3 cut(s) 57, 852, 1309
CaiI CAGNNNCTG 2 cut(s) 11, 1229
CfoI GCGC 2 cut(s) 120, 965
Cfr10I RCCGGY 1 cut(s) 1286
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 2 cut(s) 77, 94
Csp6I GTAC 4 cut(s) 361, 628, 913, 1290
CspAI ACCGGT 1 cut(s) 1286
CviQI GTAC 4 cut(s) 361, 628, 913, 1290
DdeI CTNAG 1 cut(s) 448
DpnI GATC 8 cut(s) 255, 326, 453, 864, 884, 1079, 1138, 1349
DpnII GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
DrdI GACNNNNNNGTC 1 cut(s) 1153
DseDI GACNNNNNNGTC 1 cut(s) 1153
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 2 cut(s) 390, 986
EarI CTCTTC 2 cut(s) 390, 986
Ecl136II GAGCTC 1 cut(s) 979
Eco130I CCWWGG 2 cut(s) 418, 526
Eco24I GRGCYC 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 2 cut(s) 600, 1134
Eco91I GGTNACC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 979
EcoO65I GGTNACC 1 cut(s) 124
EcoRII CCWGG 3 cut(s) 14, 195, 887
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 418, 526
EcoT22I ATGCAT 2 cut(s) 61, 921
EcoT38I GRGCYC 1 cut(s) 981
ErhI CCWWGG 2 cut(s) 418, 526
FaqI GGGAC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 181
FbaI TGATCA 2 cut(s) 253, 324
Fnu4HI GCNGC 1 cut(s) 1185
FokI GGATG 4 cut(s) 417, 508, 906, 974
FriOI GRGCYC 1 cut(s) 981
Fsp4HI GCNGC 1 cut(s) 1185
FspBI CTAG 1 cut(s) 1323
GlaI GCGC 2 cut(s) 119, 964
GluI GCNGC 1 cut(s) 1185
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 3 cut(s) 392, 423, 1251
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 1 cut(s) 569
HapII CCGG 2 cut(s) 346, 1287
HgaI GACGC 2 cut(s) 77, 94
HhaI GCGC 2 cut(s) 120, 965
Hin6I GCGC 2 cut(s) 118, 963
HinP1I GCGC 2 cut(s) 118, 963
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 4 cut(s) 8, 137, 531, 1032
HpaII CCGG 2 cut(s) 346, 1287
HphI GGTGA 5 cut(s) 80, 434, 749, 1072, 1192
Hpy166II GTNNAC 3 cut(s) 190, 445, 1320
Hpy188I TCNGA 4 cut(s) 136, 243, 434, 451
Hpy188III TCNNGA 3 cut(s) 146, 718, 1230
Hpy8I GTNNAC 3 cut(s) 190, 445, 1320
HpyAV CCTTC 3 cut(s) 59, 552, 688
HpyCH4III ACNGT 3 cut(s) 42, 459, 1167
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 6 cut(s) 59, 113, 692, 919, 1009, 1110
HpyF3I CTNAG 1 cut(s) 448
HpySE526I ACGT 1 cut(s) 426
HspAI GCGC 2 cut(s) 118, 963
Ksp22I TGATCA 2 cut(s) 253, 324
Kzo9I GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
LguI GCTCTTC 1 cut(s) 986
LmnI GCTCC 3 cut(s) 137, 579, 1232
Lsp1109I GCAGC 1 cut(s) 1171
LweI GCATC 3 cut(s) 227, 928, 1018
MaeI CTAG 1 cut(s) 1323
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 4 cut(s) 101, 124, 422, 505
MalI GATC 8 cut(s) 255, 326, 453, 864, 884, 1079, 1138, 1349
MboI GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 3 cut(s) 451, 862, 882
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 5 cut(s) 168, 273, 280, 410, 939
MluI ACGCGT 1 cut(s) 86
Mph1103I ATGCAT 2 cut(s) 61, 921
MseI TTAA 5 cut(s) 279, 287, 639, 938, 1215
MslI CAYNNNNRTG 1 cut(s) 1085
MspA1I CMGCKG 1 cut(s) 1105
MspI CCGG 2 cut(s) 346, 1287
MspR9I CCNGG 4 cut(s) 16, 197, 347, 889
MunI CAATTG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 3 cut(s) 16, 197, 889
MvnI CGCG 1 cut(s) 88
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 181
NdeII GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
NlaIV GGNNCC 4 cut(s) 769, 829, 864, 1234
NmuCI GTSAC 3 cut(s) 101, 422, 505
NsiI ATGCAT 2 cut(s) 61, 921
NspI RCATGY 3 cut(s) 59, 919, 1311
OliI CACNNNNGTG 1 cut(s) 1085
PaeI GCATGC 2 cut(s) 59, 1311
PciSI GCTCTTC 1 cut(s) 986
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 4 cut(s) 8, 137, 531, 1032
PflMI CCANNNNNTGG 1 cut(s) 1229
PfoI TCCNGGA 1 cut(s) 195
PinAI ACCGGT 1 cut(s) 1286
PkrI GCNGC 1 cut(s) 1186
Psp124BI GAGCTC 1 cut(s) 981
Psp6I CCWGG 3 cut(s) 14, 195, 887
PspEI GGTNACC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 3 cut(s) 14, 195, 887
PspN4I GGNNCC 4 cut(s) 769, 829, 864, 1234
PspPI GGNCC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 2 cut(s) 11, 1229
PsuI RGATCY 3 cut(s) 451, 862, 882
PvuII CAGCTG 1 cut(s) 1105
RsaI GTAC 4 cut(s) 362, 629, 914, 1291
RsaNI GTAC 4 cut(s) 361, 628, 913, 1290
RseI CAYNNNNRTG 1 cut(s) 1085
SacI GAGCTC 1 cut(s) 981
SapI GCTCTTC 1 cut(s) 986
SaqAI TTAA 5 cut(s) 279, 287, 639, 938, 1215
SatI GCNGC 1 cut(s) 1185
Sau3AI GATC 8 cut(s) 253, 324, 451, 862, 882, 1077, 1136, 1347
Sau96I GGNCC 1 cut(s) 415
ScrFI CCNGG 4 cut(s) 16, 197, 347, 889
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 3 cut(s) 227, 928, 1018
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 1085
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SphI GCATGC 2 cut(s) 59, 1311
Sse9I AATT 5 cut(s) 168, 273, 280, 410, 939
SsiI CCGC 2 cut(s) 334, 1073
SspMI CTAG 1 cut(s) 1323
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 4 cut(s) 14, 195, 345, 887
StyI CCWWGG 2 cut(s) 418, 526
TaaI ACNGT 3 cut(s) 42, 459, 1167
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 1350
TasI AATT 5 cut(s) 168, 273, 280, 410, 939
TatI WGTACW 2 cut(s) 360, 627
TfiI GAWTC 4 cut(s) 8, 137, 531, 1032
Tru1I TTAA 5 cut(s) 279, 287, 639, 938, 1215
Tru9I TTAA 5 cut(s) 279, 287, 639, 938, 1215
TscAI CASTG 5 cut(s) 52, 269, 762, 1117, 1170
TseFI GTSAC 3 cut(s) 101, 422, 505
TseI GCWGC 1 cut(s) 1184
Tsp45I GTSAC 3 cut(s) 101, 422, 505
TspDTI ATGAA 6 cut(s) 670, 976, 1030, 1039, 1254, 1326
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 5 cut(s) 52, 269, 762, 1117, 1170
Van91I CCANNNNNTGG 1 cut(s) 1229
VpaK11BI GGWCC 1 cut(s) 415
XceI RCATGY 3 cut(s) 59, 919, 1311
XcmI CCANNNNNNNNNTGG 2 cut(s) 778, 906
XspI CTAG 1 cut(s) 1323
Zsp2I ATGCAT 2 cut(s) 61, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.