Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010668

Physical Location & Seq

Genomic Coordinates Reverse (-)

347097 .. 349138

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00630.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGAGAGGACCTCTCGCTTTTCAGCTATGGATCTCTGTGTGTCTTTTGCTCTTCTTTCATGCTCGCTGCTTCTACCTCCCGGGTGTCGCCCCTCAAGATTTTCAGCAGGGAAATACCTTGAATGTGAAGGTGAACAAACTGACCTCTACAAAAACTCAACTTCCTTACTCATACTATTCCCTCCCATACTGTTCTCCGGAGCATATAGTAGACAGTGCAGAAAATCTTGGGGAAGTTCTTCGTGGTGATCGCATTGAAAACTCTCCTTACGAGTTCAACATGAGAGAACCAAAGATGTGCAGTGTTGTATGTCGTGTAGTTCTTAATGCAAAAACTGCAAAGGAGTTTAAGGAAAAGATAGATGATGAGTATCGGGTGAACATGATTCTGGATAATCTTCCTCTGGTTGTTCCTATACCACGGCTTGATCGGGAAAATGCCTTAGTGTATCAACATGGATTTCATGTTGGTCTTAGAGGACAATATGCTGGGAACAAGGATGAAAAGCATTTTATCAACAATCACTTAACATTTACAGTCAAGTATCACAAGGATCCAATGACAGAATCTGCCAGGATTGTCGGATTTGAGGTGAAACCATTCAGTGTTAAGCATGAATATGAAGGTGAGTGGACTAACAAGACACGTTTAACGACCTGTGATCCCCATGCAAAGCGAACAGTTAGCAGCTCTGAATCTCCTCAGGAGGTTGAAGATAAAAAGGAAATTATATTCACATATGATGTTGAGTTCCAGGAGAGTGATGTGAAGTGGGCATCCCGGTGGGACACATATCTACTGATGGCTGATGATCAGATCGTAGCACTGGTTCTCAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0008150 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0031410 GO:0031982 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0060341 GO:0065007 GO:0070201 GO:0070861 GO:0070863 GO:0090087 GO:0090316 GO:0097708 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

282

Amino Acids

32.53

Weight (kDa)

6.01

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24170 AT2G24170
fragaria_vesca	FvH4_1g00890 FvH4_1g00890 FvH4_1g00890
malus_domestica	MD02G1007300.v1.1 MD15G1144600.v1.1
prunus_persica	Prupe.7G263100_v2.0.a1
pyrus_communis	pycom02g00630 pycom15g13620
rosa_chinensis	RchiOBHm_Chr2g0085601
rosa_laevigata	RLG00000015704
rosa_multiflora	Rmu_sc0016087.1_g000003
rosa_roxburghii	Rroxscaffold_2G00155230
rosa_rugosa	Rorug01G0461500
rosa_samantha	Rh2AG010800 Rh2BG011200 Rh2CG012100 Rh2DG013200
rosa_wichuraiana	Rw2G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	199
AclWI	GGATC	4 cut(s)	41, 551, 564, 659
AflIII	ACRYGT	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	124, 260, 280, 716
AjnI	CCWGG	2 cut(s)	575, 756
AluBI	AGCT	2 cut(s)	28, 693
AluI	AGCT	2 cut(s)	28, 693
AlwI	GGATC	4 cut(s)	41, 551, 564, 659
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	69, 690
Asp700I	GAANNNNTTC	2 cut(s)	240, 602
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	3 cut(s)	83, 84, 784
AsuHPI	GGTGA	5 cut(s)	145, 260, 391, 607, 641
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	56, 702
BccI	CCATC	1 cut(s)	799
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	2 cut(s)	577, 758
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	3 cut(s)	83, 84, 784
BisI	GCNGC	2 cut(s)	70, 691
BlsI	GCNGC	2 cut(s)	71, 692
Bme1390I	CCNGG	5 cut(s)	83, 84, 577, 758, 784
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	5 cut(s)	83, 84, 577, 758, 784
BmsI	GCATC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	30, 32
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	3 cut(s)	83, 84, 784
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	82, 422
BsaWI	WCCGGW	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	834
Bse21I	CCTNAGG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	577, 758
BseDI	CCNNGG	2 cut(s)	82, 422
BseGI	GGATG	2 cut(s)	508, 779
BseJI	GATNNNNATC	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	719
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	56, 702
BseYI	CCCAGC	1 cut(s)	491
BsgI	GTGCAG	2 cut(s)	240, 322
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	83, 200, 784
BslFI	GGGAC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	803
BsoBI	CYCGRG	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
BspCNI	CTCAG	1 cut(s)	718
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	4 cut(s)	41, 551, 564, 659
BspQI	GCTCTTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	2 cut(s)	82, 422
BssMI	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
Bst2UI	CCWGG	2 cut(s)	577, 758
Bst4CI	ACNGT	4 cut(s)	194, 218, 541, 685
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	445, 476, 705
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	508, 779
BstKTI	GATC	7 cut(s)	36, 253, 433, 559, 667, 817, 822
BstMBI	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	2 cut(s)	577, 758
BstSCI	CCNGG	5 cut(s)	81, 82, 575, 756, 782
BstV1I	GCAGC	2 cut(s)	56, 702
BstX2I	RGATCY	2 cut(s)	33, 556
BstYI	RGATCY	2 cut(s)	33, 556
Bsu36I	CCTNAGG	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	508, 779
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	4 cut(s)	223, 310, 613, 827
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	11
Cfr9I	CCCGGG	1 cut(s)	82
CviAII	CATG	7 cut(s)	62, 283, 385, 458, 467, 617, 671
CviJI	RGCY	4 cut(s)	28, 427, 693, 809
CviKI_1	RGCY	4 cut(s)	28, 427, 693, 809
DdeI	CTNAG	3 cut(s)	445, 476, 705
DpnI	GATC	7 cut(s)	35, 252, 432, 558, 666, 816, 821
DpnII	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	575, 756
FaeI	CATG	7 cut(s)	65, 286, 388, 461, 470, 620, 674
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	7 cut(s)	61, 282, 384, 457, 466, 616, 670
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	70, 691
FokI	GGATG	2 cut(s)	515, 766
Fsp4HI	GCNGC	2 cut(s)	70, 691
GluI	GCNGC	2 cut(s)	70, 691
GsaI	CCCAGC	1 cut(s)	495
HapII	CCGG	3 cut(s)	83, 200, 784
Hin1II	CATG	7 cut(s)	65, 286, 388, 461, 470, 620, 674
HinfI	GANTC	3 cut(s)	388, 569, 698
HpaII	CCGG	3 cut(s)	83, 200, 784
HphI	GGTGA	5 cut(s)	145, 260, 391, 607, 641
Hpy166II	GTNNAC	4 cut(s)	136, 214, 382, 636
Hpy188I	TCNGA	3 cut(s)	587, 697, 819
Hpy188III	TCNNGA	5 cut(s)	98, 200, 392, 434, 707
Hpy8I	GTNNAC	4 cut(s)	136, 214, 382, 636
HpyAV	CCTTC	2 cut(s)	124, 620
HpyCH4III	ACNGT	4 cut(s)	194, 218, 541, 685
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	5 cut(s)	221, 303, 332, 341, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	3 cut(s)	445, 476, 705
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	7 cut(s)	65, 286, 388, 461, 470, 620, 674
Kpn2I	TCCGGA	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	56, 702
LweI	GCATC	1 cut(s)	788
MaeII	ACGT	1 cut(s)	649
MalI	GATC	7 cut(s)	35, 252, 432, 558, 666, 816, 821
MboI	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
MboII	GAAGA	4 cut(s)	46, 233, 392, 728
MfeI	CAATTG	1 cut(s)	838
MflI	RGATCY	2 cut(s)	33, 556
MluCI	AATT	2 cut(s)	729, 838
MmeI	TCCRAC	1 cut(s)	565
MroI	TCCGGA	1 cut(s)	199
MroXI	GAANNNNTTC	2 cut(s)	240, 602
MseI	TTAA	6 cut(s)	327, 351, 530, 612, 653, 844
MslI	CAYNNNNRTG	2 cut(s)	621, 784
MspI	CCGG	3 cut(s)	83, 200, 784
MspR9I	CCNGG	5 cut(s)	83, 84, 577, 758, 784
MunI	CAATTG	1 cut(s)	838
MvaI	CCWGG	2 cut(s)	577, 758
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	3 cut(s)	83, 84, 784
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
NlaIII	CATG	7 cut(s)	65, 286, 388, 461, 470, 620, 674
NlaIV	GGNNCC	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	59
PdmI	GAANNNNTTC	2 cut(s)	240, 602
PfeI	GAWTC	3 cut(s)	388, 569, 698
PfoI	TCCNGGA	1 cut(s)	756
PkrI	GCNGC	2 cut(s)	71, 692
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	575, 756
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	575, 756
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PsrI	GAACNNNNNNTAC	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	33, 556
RseI	CAYNNNNRTG	2 cut(s)	621, 784
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	6 cut(s)	327, 351, 530, 612, 653, 844
SatI	GCNGC	2 cut(s)	70, 691
Sau3AI	GATC	7 cut(s)	33, 250, 430, 556, 664, 814, 819
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	5 cut(s)	83, 84, 577, 758, 784
SfaNI	GCATC	1 cut(s)	788
SinI	GGWCC	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	621, 784
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	729, 838
StyD4I	CCNGG	5 cut(s)	81, 82, 575, 756, 782
TaaI	ACNGT	4 cut(s)	194, 218, 541, 685
TaiI	ACGT	1 cut(s)	652
TasI	AATT	2 cut(s)	729, 838
TfiI	GAWTC	3 cut(s)	388, 569, 698
Tru1I	TTAA	6 cut(s)	327, 351, 530, 612, 653, 844
Tru9I	TTAA	6 cut(s)	327, 351, 530, 612, 653, 844
TscAI	CASTG	4 cut(s)	223, 310, 613, 834
TseI	GCWGC	2 cut(s)	69, 690
TspDTI	ATGAA	5 cut(s)	50, 455, 519, 633, 639
TspMI	CCCGGG	1 cut(s)	82
TspRI	CASTG	4 cut(s)	223, 310, 613, 834
VpaK11BI	GGWCC	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	2 cut(s)	240, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.