FvH4_1g03660

Leucine-rich repeat extensin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018341
Physical Location & Seq
Forward (+)
1981187 .. 1982374
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03660.t1

Sequence Viewer

Length: 1188 bp
ATGAAAGCATGCATGGTATTCATTGTTTTTCTCTTAGCTCTGCTACTGATCACCCAAACAATCACAGAAGCTAAACACCCGCAGAATGTGAAGGAAGGAAAAGTAGCAGAAGAGAAGAGAAGCGGAAGCAACAGAAACAGAACCAGTACTGGTAGAAGCAGCAGAAGCAGAGGAAGAGGCAGTAATGGTGGATCAAGGTCAAGAACAAGATCAAACTGTGATCCATTGTTCCAGTTTCTGTTTGGAACCTGTGGCCAATGGCCTTTCCCTACCAACCCTTCCCCGAACAACCCTTTTGCCCCAACGCCGAGACCCTCTCCAAGGCCGCCTCGAGTTCCACCTTCTCCTTTACGCCCCTTCCCGCCCGTAATCCCGTCTCCACCGCCACAAGCACCATCTCCACCACCTTTGCCACCGCCACCAATTCCACCACCCCCTTCAGCTCCGCCACCATCATCGTCACCTCCGCCGTCAGCACCACCTCCATCATCGCCACCTCCACCGCCTTTGGTTCCTTCTCCACCTCCGCCGTCTCCACCACCACCAGAATTCCTGCCGCCACCAATACCAATCGTCTTTCCACCACCACCGGATGTAGAGATGCAACCACCCACAACTCCTTGGCTCTCACCTCCCGACACCTTCCCTGATACACCACCAACCATTCCAGCTCCACCATTAGTACCAGATATTGACCTTCCTCCACCTGCATTACCAGACTTACCACCATCCGGAGATCAGTCTAGTACTCCAGCAACACCACTGGTTCCAGTATTTTCACCACCACAAGATGAGCCTACTCCAACCTTACCACCCATATTTACATTACCACCACCAATACCTATACCTGATCAGCCTTCTCCCATCTTTACATTTCCACCACCAATAACTGTTGATGAACCATCTCCAATATTACTACCTCCGCAAGATCCATTTTCGTTTAACACACCACCAATCTTACCATTTCCAACTACACCAGACACCGGTAATGGTGGTGGTGGTGTGATTGATCAGCCACCATCTTTTGATCCACTTCCACAGACACCAGTCTTTCTGCCACCTCCAATTCCGGAAATTCCCCAAAATCCACAGGAACCACCAGTACTTTCATCTGAGACTAGTCCACCAGCACCAGATATACCTATCAATGAGCCACTGCAGCAGCCATTGGAACCCAAACTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

41.79

Weight (kDa)

4.67

Isoelectric Point (pI)

104.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018341)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03660
prunus_persica Prupe.3G095500_v2.0.a1
rosa_laevigata RLG00000019345
rosa_multiflora Rmu_sc0017323.1_g000006
rosa_roxburghii Rroxscaffold_2G00111030
rosa_rugosa Rorug02G0312300
rosa_samantha Rh2AG365100 Rh2CG348400 Rh2DG387600
rosa_wichuraiana Rw2G029750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 715
Acc36I ACCTGC 1 cut(s) 715
AccIII TCCGGA 2 cut(s) 731, 1069
AclWI GGATC 4 cut(s) 199, 215, 923, 1022
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 548, 1074
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 4 cut(s) 148, 684, 748, 1104
AfiI CCNNNNNNNGG 3 cut(s) 321, 731, 983
AgeI ACCGGT 1 cut(s) 983
AhlI ACTAGT 1 cut(s) 1118
AloI GAACNNNNNNTCC 1 cut(s) 1164
AluBI AGCT 4 cut(s) 38, 71, 443, 671
AluI AGCT 4 cut(s) 38, 71, 443, 671
Alw26I GTCTC 4 cut(s) 304, 381, 537, 1109
AlwI GGATC 4 cut(s) 199, 215, 923, 1022
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 330
Aor13HI TCCGGA 2 cut(s) 731, 1069
AoxI GGCC 3 cut(s) 253, 260, 323
ApeKI GCWGC 3 cut(s) 159, 1159, 1162
ApoI RAATTY 2 cut(s) 548, 1074
AsiGI ACCGGT 1 cut(s) 983
AsuHPI GGTGA 4 cut(s) 43, 453, 621, 771
AvaI CYCGRG 1 cut(s) 330
BalI TGGCCA 1 cut(s) 255
BbvI GCAGC 3 cut(s) 171, 1171, 1174
BccI CCATC 7 cut(s) 403, 460, 493, 736, 872, 910, 1027
BceAI ACGGC 2 cut(s) 454, 514
BclI TGATCA 3 cut(s) 48, 850, 1009
BcoDI GTCTC 4 cut(s) 304, 381, 537, 1109
BcuI ACTAGT 1 cut(s) 1118
BfaI CTAG 2 cut(s) 744, 1119
BfmI CTRYAG 1 cut(s) 1157
BfuAI ACCTGC 1 cut(s) 715
BisI GCNGC 5 cut(s) 160, 326, 557, 1160, 1163
BlsI GCNGC 5 cut(s) 161, 327, 558, 1161, 1164
BmcAI AGTACT 3 cut(s) 148, 748, 1104
BmeT110I CYCGRG 1 cut(s) 330
BmiI GGNNCC 5 cut(s) 247, 513, 768, 1095, 1173
BmsI GCATC 1 cut(s) 591
BoxI GACNNNNGTC 1 cut(s) 1046
BplI GAGNNNNNCTC 2 cut(s) 301, 333
BpmI CTGGAG 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 320, 620
BsaWI WCCGGW 4 cut(s) 589, 731, 983, 1069
BsaXI ACNNNNNCTCC 1 cut(s) 1164
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 731, 983
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 7 cut(s) 144, 154, 232, 768, 770, 1046, 1100
BseAI TCCGGA 2 cut(s) 731, 1069
BseDI CCNNGG 2 cut(s) 320, 620
BseGI GGATG 2 cut(s) 598, 728
BseLI CCNNNNNNNGG 3 cut(s) 321, 731, 983
BseMII CTCAG 1 cut(s) 1104
BseNI ACTGG 7 cut(s) 144, 154, 232, 768, 770, 1046, 1100
BseXI GCAGC 3 cut(s) 171, 1171, 1174
BshFI GGCC 3 cut(s) 255, 262, 325
BshTI ACCGGT 1 cut(s) 983
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 4 cut(s) 590, 732, 984, 1070
BslI CCNNNNNNNGG 3 cut(s) 321, 731, 983
BsmAI GTCTC 4 cut(s) 304, 381, 537, 1109
BsmBI CGTCTC 2 cut(s) 381, 537
BsnI GGCC 3 cut(s) 255, 262, 325
Bso31I GGTCTC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 330
Bsp13I TCCGGA 2 cut(s) 731, 1069
Bsp143I GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
BspANI GGCC 3 cut(s) 255, 262, 325
BspCNI CTCAG 1 cut(s) 1105
BspEI TCCGGA 2 cut(s) 731, 1069
BspLI GGNNCC 5 cut(s) 247, 513, 768, 1095, 1173
BspMAI CTGCAG 1 cut(s) 1161
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 4 cut(s) 199, 215, 923, 1022
BspTNI GGTCTC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 983
BsrI ACTGG 7 cut(s) 144, 154, 232, 768, 770, 1046, 1100
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 2 cut(s) 320, 620
BssMI GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
BssT1I CCWWGG 2 cut(s) 320, 620
Bst4CI ACNGT 2 cut(s) 218, 892
Bst6I CTCTTC 3 cut(s) 105, 110, 169
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 34, 1113
BstENI CCTNNNNNAGG 1 cut(s) 319
BstF5I GGATG 2 cut(s) 598, 728
BstKTI GATC 9 cut(s) 51, 194, 212, 223, 739, 853, 931, 1012, 1030
BstMAI GTCTC 4 cut(s) 304, 381, 537, 1109
BstMBI GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 165, 1159
BstNSI RCATGY 1 cut(s) 12
BstPAI GACNNNNGTC 1 cut(s) 1046
BstSFI CTRYAG 1 cut(s) 1157
BstV1I GCAGC 3 cut(s) 171, 1171, 1174
BstX2I RGATCY 1 cut(s) 928
BstYI RGATCY 1 cut(s) 928
BsuRI GGCC 3 cut(s) 255, 262, 325
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 598, 728
BtsI GCAGTG 1 cut(s) 1154
BtsIMutI CAGTG 2 cut(s) 761, 1154
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 983
Csp6I GTAC 4 cut(s) 147, 683, 747, 1103
CspAI ACCGGT 1 cut(s) 983
CspCI CAANNNNNGTGG 4 cut(s) 390, 425, 489, 524
CviAII CATG 2 cut(s) 9, 13
CviQI GTAC 4 cut(s) 147, 683, 747, 1103
DdeI CTNAG 2 cut(s) 34, 1113
DpnI GATC 9 cut(s) 50, 193, 211, 222, 738, 852, 930, 1011, 1029
DpnII GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 3 cut(s) 105, 110, 169
EarI CTCTTC 3 cut(s) 105, 110, 169
EciI GGCGGA 3 cut(s) 435, 456, 516
Eco130I CCWWGG 2 cut(s) 320, 620
Eco31I GGTCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 330
EcoNI CCTNNNNNAGG 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 548
EcoT14I CCWWGG 2 cut(s) 320, 620
EcoT22I ATGCAT 1 cut(s) 14
ErhI CCWWGG 2 cut(s) 320, 620
Esp3I CGTCTC 2 cut(s) 381, 537
FaeI CATG 2 cut(s) 12, 16
FaiI YATR 5 cut(s) 10, 14, 818, 845, 1139
FatI CATG 2 cut(s) 8, 12
FauI CCCGC 2 cut(s) 87, 369
FbaI TGATCA 3 cut(s) 48, 850, 1009
Fnu4HI GCNGC 5 cut(s) 160, 326, 557, 1160, 1163
FokI GGATG 2 cut(s) 605, 715
Fsp4HI GCNGC 5 cut(s) 160, 326, 557, 1160, 1163
FspBI CTAG 2 cut(s) 744, 1119
GluI GCNGC 5 cut(s) 160, 326, 557, 1160, 1163
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 3 cut(s) 255, 262, 325
HapII CCGG 4 cut(s) 590, 732, 984, 1070
Hin1II CATG 2 cut(s) 12, 16
HpaII CCGG 4 cut(s) 590, 732, 984, 1070
HphI GGTGA 4 cut(s) 43, 453, 621, 771
Hpy166II GTNNAC 1 cut(s) 1124
Hpy188I TCNGA 1 cut(s) 1114
Hpy188III TCNNGA 4 cut(s) 201, 635, 732, 1070
Hpy8I GTNNAC 1 cut(s) 1124
HpyCH4III ACNGT 2 cut(s) 218, 892
HpyCH4V TGCA 4 cut(s) 12, 604, 710, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 1159
HpyF3I CTNAG 2 cut(s) 34, 1113
Hsp92II CATG 2 cut(s) 12, 16
Kpn2I TCCGGA 2 cut(s) 731, 1069
Ksp22I TGATCA 3 cut(s) 48, 850, 1009
Kzo9I GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
LmnI GCTCC 2 cut(s) 448, 676
Lsp1109I GCAGC 3 cut(s) 171, 1171, 1174
LweI GCATC 1 cut(s) 591
MaeI CTAG 2 cut(s) 744, 1119
MaeIII GTNAC 1 cut(s) 459
MalI GATC 9 cut(s) 50, 193, 211, 222, 738, 852, 930, 1011, 1029
MboI GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
MboII GAAGA 3 cut(s) 122, 127, 186
MflI RGATCY 1 cut(s) 928
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 4 cut(s) 423, 548, 1065, 1074
MluNI TGGCCA 1 cut(s) 255
MmeI TCCRAC 2 cut(s) 827, 992
Mox20I TGGCCA 1 cut(s) 255
Mph1103I ATGCAT 1 cut(s) 14
MroI TCCGGA 2 cut(s) 731, 1069
MscI TGGCCA 1 cut(s) 255
MseI TTAA 2 cut(s) 942, 1186
Msp20I TGGCCA 1 cut(s) 255
MspI CCGG 4 cut(s) 590, 732, 984, 1070
MwoI GCNNNNNNNGC 2 cut(s) 165, 1159
NdeII GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
NlaIII CATG 2 cut(s) 12, 16
NlaIV GGNNCC 5 cut(s) 247, 513, 768, 1095, 1173
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 459
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 1 cut(s) 12
PaeI GCATGC 1 cut(s) 12
PaeR7I CTCGAG 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 715
PinAI ACCGGT 1 cut(s) 983
PkrI GCNGC 5 cut(s) 161, 327, 558, 1161, 1164
PshAI GACNNNNGTC 1 cut(s) 1046
PspN4I GGNNCC 5 cut(s) 247, 513, 768, 1095, 1173
PspXI VCTCGAGB 1 cut(s) 330
PsrI GAACNNNNNNTAC 2 cut(s) 1086, 1118
PstI CTGCAG 1 cut(s) 1161
PstNI CAGNNNCTG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 928
RsaI GTAC 4 cut(s) 148, 684, 748, 1104
RsaNI GTAC 4 cut(s) 147, 683, 747, 1103
SaqAI TTAA 2 cut(s) 942, 1186
SatI GCNGC 5 cut(s) 160, 326, 557, 1160, 1163
Sau3AI GATC 9 cut(s) 48, 191, 209, 220, 736, 850, 928, 1009, 1027
ScaI AGTACT 3 cut(s) 148, 748, 1104
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 1157
Sfr274I CTCGAG 1 cut(s) 330
SlaI CTCGAG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
SpeI ACTAGT 1 cut(s) 1118
SphI GCATGC 1 cut(s) 12
Sse9I AATT 4 cut(s) 423, 548, 1065, 1074
SspI AATATT 1 cut(s) 912
SspMI CTAG 2 cut(s) 744, 1119
StyI CCWWGG 2 cut(s) 320, 620
TaaI ACNGT 2 cut(s) 218, 892
TaqI TCGA 1 cut(s) 331
TasI AATT 4 cut(s) 423, 548, 1065, 1074
TatI WGTACW 3 cut(s) 146, 746, 1102
TauI GCSGC 2 cut(s) 328, 559
Tru1I TTAA 2 cut(s) 942, 1186
Tru9I TTAA 2 cut(s) 942, 1186
TscAI CASTG 2 cut(s) 768, 1161
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 3 cut(s) 159, 1159, 1162
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 4 cut(s) 10, 17, 912, 1098
TspRI CASTG 2 cut(s) 768, 1161
XagI CCTNNNNNAGG 1 cut(s) 319
XapI RAATTY 2 cut(s) 548, 1074
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 330
XspI CTAG 2 cut(s) 744, 1119
ZrmI AGTACT 3 cut(s) 148, 748, 1104
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.