Rh2AG365100

Leucine-rich repeat extensin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018341
Physical Location & Seq
Forward (+)
54109887 .. 54111074
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG365100.1

Sequence Viewer

Length: 1188 bp
ATGAAAGCATGCATAGTATTCATTGCTATTCTCTTAGCTCTGCTTCTGATCATCCAAACAATCACAGAAGCTAAACACCTGCAAAATGAGGAAGAAGATAATGTAGCAGAAGAAAAAAGAAGCAGGAGCAGCAGAAGCAGAAGCAGAGGAAGAGGCAGCAATGGTGGATCAAGATCAAACTGTGATCCATTATTCCAGTACCTATTTGGAACCTGTGGCCAATGGCCATTCCCTACCAACCCTTCCCCAAACAACCCTTTTGCCCCAACACCAAGACCCTCTCCTCGGCCGCCGCGAGTGCCACCTACTCCTATACGCCCCTTCCCACCCGTAATCCCATCCCCACCGCCAGTAGTACCATCTCCACCACCTTTGCCGCCACCAATTCCTCCACCCCCTTCAACACCGCCACCATCCTCACCTCCACCATCAGCACCACCTCCATCACTGCCACCACCTTCTCCCTCACCGCCACCGCCTTCTCCACCTCCACCGCCTTTGGTTCCATCGCCACCTCCGCCGTCTCCACCACCACCAGAATTCCTGCCCCCACCAATACCAATCATCTATCCACCACCACCAGATGAAGACATACAACCACCCACACTTCCGTGGCTGTCACCCCCTGACACCTTCCCTGATACACCACCAACCATTCCAGCTCCACCACTAGTACCAGATATTGACCTTCCTCCACCCGCATTACCAGACCTGCCACCATCTGGTGATCAGTCTAGCACTCCAGCAACACCACTGGTTCCAATTTTCACTCCACCACTGCCTGAAGATGAGCCTACTCCAACCTTACCACCCACAGTTGCATTACCACCACCGATACCTATACCTGATCAGCCTTCTCCAATATTTACATTCCCACCACCAATACCTGTTGATCAGCCTTCTCCAATATTACTACCACCGCAAGATCCATTTCCGTTTAACACACCACCTATCTTACCCTTTCCAACTACACCAGACACCGGTAATAGTGGTGGTGGTGTGATTGACCAGCCACCCTCTTTTGATCCACTACCACAAACACCAGTCTTTCTGCCACCTCCAATTCCTGAAATTCCCCAAAATCCACAGCAACCACCAGTAGTACTTCCATTTGAGTCTAGTCCGCCAGCACCAGATATAAGTTTTAATGAGCCACTGCAGCAGCCATTGGAGCCCACACTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

41.84

Weight (kDa)

4.18

Isoelectric Point (pI)

113.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018341)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03660
prunus_persica Prupe.3G095500_v2.0.a1
rosa_laevigata RLG00000019345
rosa_multiflora Rmu_sc0017323.1_g000006
rosa_roxburghii Rroxscaffold_2G00111030
rosa_rugosa Rorug02G0312300
rosa_samantha Rh2AG365100 Rh2CG348400 Rh2DG387600
rosa_wichuraiana Rw2G029750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 87
Acc36I ACCTGC 2 cut(s) 87, 720
AccB7I CCANNNNNTGG 1 cut(s) 722
AccII CGCG 1 cut(s) 295
AclWI GGATC 4 cut(s) 175, 179, 920, 1019
AcoI YGGCCR 3 cut(s) 217, 224, 287
AcsI RAATTY 2 cut(s) 539, 1071
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 4 cut(s) 200, 357, 675, 1104
AfiI CCNNNNNNNGG 3 cut(s) 285, 722, 980
AgeI ACCGGT 1 cut(s) 980
AgsI TTSAA 1 cut(s) 402
AhlI ACTAGT 1 cut(s) 670
AleI CACNNNNGTG 1 cut(s) 610
AluBI AGCT 3 cut(s) 38, 71, 662
AluI AGCT 3 cut(s) 38, 71, 662
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 4 cut(s) 175, 179, 920, 1019
AoxI GGCC 3 cut(s) 217, 224, 287
ApeKI GCWGC 4 cut(s) 129, 156, 1159, 1162
ApoI RAATTY 2 cut(s) 539, 1071
AsiGI ACCGGT 1 cut(s) 980
AsuHPI GGTGA 4 cut(s) 411, 459, 612, 737
BalI TGGCCA 2 cut(s) 219, 226
BanII GRGCYC 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 141, 168, 1171, 1174
BccI CCATC 7 cut(s) 346, 367, 421, 436, 451, 514, 727
BceAI ACGGC 1 cut(s) 505
BclI TGATCA 4 cut(s) 48, 727, 847, 892
BcoDI GTCTC 1 cut(s) 528
BcuI ACTAGT 1 cut(s) 670
BfaI CTAG 3 cut(s) 671, 735, 1119
BfmI CTRYAG 1 cut(s) 1157
BfuAI ACCTGC 2 cut(s) 87, 720
BisI GCNGC 7 cut(s) 130, 157, 290, 293, 377, 1160, 1163
BlsI GCNGC 7 cut(s) 131, 158, 291, 294, 378, 1161, 1164
BmcAI AGTACT 1 cut(s) 1104
BmiI GGNNCC 4 cut(s) 211, 504, 759, 1173
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 284, 611
BsaWI WCCGGW 1 cut(s) 980
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 722, 980
Bse118I RCCGGY 1 cut(s) 980
Bse1I ACTGG 5 cut(s) 196, 350, 759, 1043, 1097
Bse3DI GCAATG 2 cut(s) 21, 166
Bse8I GATNNNNATC 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 284, 611
BseGI GGATG 3 cut(s) 51, 338, 413
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 285, 722, 980
BseMI GCAATG 2 cut(s) 21, 166
BseNI ACTGG 5 cut(s) 196, 350, 759, 1043, 1097
BseRI GAGGAG 1 cut(s) 273
BseX3I CGGCCG 1 cut(s) 287
BseXI GCAGC 4 cut(s) 141, 168, 1171, 1174
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 219, 226, 289
BshTI ACCGGT 1 cut(s) 980
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 981
BslI CCNNNNNNNGG 3 cut(s) 285, 722, 980
BsmAI GTCTC 1 cut(s) 528
BsmBI CGTCTC 1 cut(s) 528
BsnI GGCC 3 cut(s) 219, 226, 289
Bsp1286I GDGCHC 1 cut(s) 1176
Bsp143I GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
BspANI GGCC 3 cut(s) 219, 226, 289
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 4 cut(s) 211, 504, 759, 1173
BspMAI CTGCAG 1 cut(s) 1161
BspMI ACCTGC 2 cut(s) 87, 720
BspPI GGATC 4 cut(s) 175, 179, 920, 1019
BsrDI GCAATG 2 cut(s) 21, 166
BsrFI RCCGGY 1 cut(s) 980
BsrI ACTGG 5 cut(s) 196, 350, 759, 1043, 1097
BssAI RCCGGY 1 cut(s) 980
BssECI CCNNGG 2 cut(s) 284, 611
BssMI GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
Bst4CI ACNGT 2 cut(s) 182, 817
Bst6I CTCTTC 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 10, 1128
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 3 cut(s) 51, 338, 413
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 9 cut(s) 51, 170, 176, 187, 730, 850, 895, 928, 1027
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 7 cut(s) 129, 135, 298, 517, 1159, 1171, 1180
BstNSI RCATGY 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 1157
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 141, 168, 1171, 1174
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
BstZI CGGCCG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 219, 226, 289
BtgI CCRYGG 1 cut(s) 611
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 3 cut(s) 51, 338, 413
BtsI GCAGTG 4 cut(s) 446, 776, 1154, 1178
BtsIMutI CAGTG 5 cut(s) 446, 752, 776, 1154, 1178
BveI ACCTGC 2 cut(s) 87, 720
Cac8I GCNNGC 2 cut(s) 10, 1128
Cfr10I RCCGGY 1 cut(s) 980
Csp6I GTAC 4 cut(s) 199, 356, 674, 1103
CspAI ACCGGT 1 cut(s) 980
CspCI CAANNNNNGTGG 4 cut(s) 354, 389, 480, 515
CviAII CATG 1 cut(s) 9
CviQI GTAC 4 cut(s) 199, 356, 674, 1103
DdeI CTNAG 1 cut(s) 34
DpnI GATC 9 cut(s) 50, 169, 175, 186, 729, 849, 894, 927, 1026
DpnII GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
EaeI YGGCCR 3 cut(s) 217, 224, 287
EagI CGGCCG 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 2 cut(s) 507, 1113
EclXI CGGCCG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 1176
Eco52I CGGCCG 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 804
EcoRI GAATTC 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 1176
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 1 cut(s) 12
FaiI YATR 6 cut(s) 10, 14, 314, 593, 842, 1139
FatI CATG 1 cut(s) 8
FauI CCCGC 1 cut(s) 706
FbaI TGATCA 4 cut(s) 48, 727, 847, 892
Fnu4HI GCNGC 7 cut(s) 130, 157, 290, 293, 377, 1160, 1163
FokI GGATG 3 cut(s) 38, 325, 400
FriOI GRGCYC 1 cut(s) 1176
Fsp4HI GCNGC 7 cut(s) 130, 157, 290, 293, 377, 1160, 1163
FspBI CTAG 3 cut(s) 671, 735, 1119
GluI GCNGC 7 cut(s) 130, 157, 290, 293, 377, 1160, 1163
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 3 cut(s) 219, 226, 289
HapII CCGG 1 cut(s) 981
Hin1II CATG 1 cut(s) 12
HinfI GANTC 1 cut(s) 1115
HpaII CCGG 1 cut(s) 981
HphI GGTGA 4 cut(s) 411, 459, 612, 737
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 2 cut(s) 171, 1067
HpyAV CCTTC 9 cut(s) 252, 331, 408, 468, 489, 643, 698, 864, 909
HpyCH4III ACNGT 2 cut(s) 182, 817
HpyCH4V TGCA 4 cut(s) 12, 82, 821, 1159
HpyF10VI GCNNNNNNNGC 7 cut(s) 129, 135, 298, 517, 1159, 1171, 1180
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 1 cut(s) 12
Ksp22I TGATCA 4 cut(s) 48, 727, 847, 892
Kzo9I GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
LmnI GCTCC 3 cut(s) 126, 667, 1171
Lsp1109I GCAGC 4 cut(s) 141, 168, 1171, 1174
MaeI CTAG 3 cut(s) 671, 735, 1119
MaeIII GTNAC 1 cut(s) 618
MalI GATC 9 cut(s) 50, 169, 175, 186, 729, 849, 894, 927, 1026
MboI GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
MboII GAAGA 6 cut(s) 104, 107, 122, 162, 599, 797
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 1176
MlsI TGGCCA 2 cut(s) 219, 226
MluCI AATT 5 cut(s) 384, 539, 762, 1062, 1071
MluNI TGGCCA 2 cut(s) 219, 226
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 2 cut(s) 824, 989
Mox20I TGGCCA 2 cut(s) 219, 226
Mph1103I ATGCAT 1 cut(s) 14
MscI TGGCCA 2 cut(s) 219, 226
MseI TTAA 3 cut(s) 939, 1146, 1186
MslI CAYNNNNRTG 1 cut(s) 610
Msp20I TGGCCA 2 cut(s) 219, 226
MspI CCGG 1 cut(s) 981
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 7 cut(s) 129, 135, 298, 517, 1159, 1171, 1180
NdeII GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
NlaIII CATG 1 cut(s) 12
NlaIV GGNNCC 4 cut(s) 211, 504, 759, 1173
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 618
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 610
PaeI GCATGC 1 cut(s) 12
PaqCI CACCTGC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 722
PinAI ACCGGT 1 cut(s) 980
PkrI GCNGC 7 cut(s) 131, 158, 291, 294, 378, 1161, 1164
PleI GAGTC 1 cut(s) 1123
PpsI GAGTC 1 cut(s) 1123
PspN4I GGNNCC 4 cut(s) 211, 504, 759, 1173
PstI CTGCAG 1 cut(s) 1161
PsuI RGATCY 1 cut(s) 925
RsaI GTAC 4 cut(s) 200, 357, 675, 1104
RsaNI GTAC 4 cut(s) 199, 356, 674, 1103
RseI CAYNNNNRTG 1 cut(s) 610
SaqAI TTAA 3 cut(s) 939, 1146, 1186
SatI GCNGC 7 cut(s) 130, 157, 290, 293, 377, 1160, 1163
Sau3AI GATC 9 cut(s) 48, 167, 173, 184, 727, 847, 892, 925, 1024
ScaI AGTACT 1 cut(s) 1104
SchI GAGTC 1 cut(s) 1124
SduI GDGCHC 1 cut(s) 1176
SfcI CTRYAG 1 cut(s) 1157
SmiMI CAYNNNNRTG 1 cut(s) 610
SpeI ACTAGT 1 cut(s) 670
SphI GCATGC 1 cut(s) 12
Sse9I AATT 5 cut(s) 384, 539, 762, 1062, 1071
SspI AATATT 2 cut(s) 864, 909
SspMI CTAG 3 cut(s) 671, 735, 1119
TaaI ACNGT 2 cut(s) 182, 817
TasI AATT 5 cut(s) 384, 539, 762, 1062, 1071
TatI WGTACW 1 cut(s) 1102
TauI GCSGC 3 cut(s) 292, 295, 379
Tru1I TTAA 3 cut(s) 939, 1146, 1186
Tru9I TTAA 3 cut(s) 939, 1146, 1186
TscAI CASTG 5 cut(s) 453, 759, 783, 1161, 1185
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 4 cut(s) 129, 156, 1159, 1162
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 3 cut(s) 10, 17, 600
TspGWI ACGGA 2 cut(s) 600, 924
TspRI CASTG 5 cut(s) 453, 759, 783, 1161, 1185
Van91I CCANNNNNTGG 1 cut(s) 722
XapI RAATTY 2 cut(s) 539, 1071
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XspI CTAG 3 cut(s) 671, 735, 1119
ZrmI AGTACT 1 cut(s) 1104
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.