Rorug02G0312300

Leucine-rich repeat extensin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018341
Physical Location & Seq
Reverse (-)
37706997 .. 37708408
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0312300.1

Sequence Viewer

Length: 546 bp
ATGGCCTCCTCCATGTTCTCATCGTCTGCCGCAGTTGCCACCGCCGCCTCCCCGGCACAAGCCAGCATGGTCGCACCATTCACTGGCCTCAAGTCTGCCGCAGCTTTCCCCATCACCAGAAAGACCAACAGTGACATTACCTCACTCCCAAGCAATGGCGGAAGAGTGCAATGCATGAAGGTGTGGCCTACAGTTGGTATGAAGAAGTTCGAGACTCTGTCCTACCTTCCACCACTTTCTCCCGAGTCCTTGGCCAAGGAAGTTGATTACCTTCTCCGCAAAGGATGGGTTCCCTGCTTGGAATTTGAGTTGGAGCACGGATTCGTGTACCGTGAGCACAACAAGTCACCTGGATACTATGACGGCCGGTACTGGACCATGTGGAAGCTACCCATGTTCGGATGCACCGACTCTGCACAAGTGTTGAAGGAGCTCGAGGAGGCCAAGAAGGCATACCCAAATGGTTTCATCCGTATCATCGGATTCGACAATGTCCGTCAAGTTCAGTGCATCAGTTTCATCGCCTACAAGCCTAAAGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.12

Weight (kDa)

9.14

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RbcS PF12338 2 - 45 1.5e-18 Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small PF00101 70 - 178 3.8e-37 Ribulose bisphosphate carboxylase, small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018341)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03660
prunus_persica Prupe.3G095500_v2.0.a1
rosa_laevigata RLG00000019345
rosa_multiflora Rmu_sc0017323.1_g000006
rosa_roxburghii Rroxscaffold_2G00111030
rosa_rugosa Rorug02G0312300
rosa_samantha Rh2AG365100 Rh2CG348400 Rh2DG387600
rosa_wichuraiana Rw2G029750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 83, 155
AciI CCGC 6 cut(s) 30, 42, 45, 99, 159, 277
AcoI YGGCCR 2 cut(s) 252, 364
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 2 cut(s) 329, 371
AfiI CCNNNNNNNGG 4 cut(s) 83, 155, 194, 398
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 3 cut(s) 104, 388, 433
AluI AGCT 3 cut(s) 104, 388, 433
Alw21I GWGCWC 3 cut(s) 318, 339, 435
Alw26I GTCTC 1 cut(s) 206
Ama87I CYCGRG 2 cut(s) 242, 434
AoxI GGCC 7 cut(s) 3, 85, 185, 252, 364, 441, 538
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 106, 339
AvaI CYCGRG 2 cut(s) 242, 434
AvaII GGWCC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 435
Bbv12I GWGCWC 3 cut(s) 318, 339, 435
BbvI GCAGC 1 cut(s) 113
BccI CCATC 2 cut(s) 119, 279
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 347
BglI GCCNNNNNGGC 2 cut(s) 53, 449
BisI GCNGC 4 cut(s) 30, 45, 99, 102
BlsI GCNGC 4 cut(s) 31, 46, 100, 103
Bme1390I CCNGG 2 cut(s) 53, 351
Bme18I GGWCC 1 cut(s) 375
BmeT110I CYCGRG 2 cut(s) 242, 434
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 2 cut(s) 53, 351
BmsI GCATC 2 cut(s) 392, 519
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 51, 249, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 155, 194, 398
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 88, 377
Bse3DI GCAATG 2 cut(s) 160, 176
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 51, 249, 255
BseGI GGATG 3 cut(s) 290, 407, 468
BseLI CCNNNNNNNGG 4 cut(s) 83, 155, 194, 398
BseMI GCAATG 2 cut(s) 160, 176
BseNI ACTGG 2 cut(s) 88, 377
BseRI GAGGAG 1 cut(s) 452
BseX3I CGGCCG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 7 cut(s) 5, 87, 187, 254, 366, 443, 540
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 3 cut(s) 318, 339, 435
BsiHKCI CYCGRG 2 cut(s) 242, 434
BsiSI CCGG 2 cut(s) 53, 367
BslI CCNNNNNNNGG 4 cut(s) 83, 155, 194, 398
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 7 cut(s) 5, 87, 187, 254, 366, 443, 540
BsoBI CYCGRG 2 cut(s) 242, 434
Bsp1286I GDGCHC 3 cut(s) 318, 339, 435
BspACI CCGC 6 cut(s) 30, 42, 45, 99, 159, 277
BspANI GGCC 7 cut(s) 5, 87, 187, 254, 366, 443, 540
BspLI GGNNCC 1 cut(s) 291
BsrDI GCAATG 2 cut(s) 160, 176
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 2 cut(s) 88, 377
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 51, 249, 255
BssT1I CCWWGG 2 cut(s) 249, 255
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 3 cut(s) 131, 193, 332
Bst6I CTCTTC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 64
BstF5I GGATG 3 cut(s) 290, 407, 468
BstMAI GTCTC 1 cut(s) 206
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 4 cut(s) 35, 44, 53, 449
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 51, 349
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 113
BstZI CGGCCG 1 cut(s) 364
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 7 cut(s) 5, 87, 187, 254, 366, 443, 540
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 3 cut(s) 290, 407, 468
BtsIMutI CAGTG 3 cut(s) 81, 136, 512
Cac8I GCNNGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 2 cut(s) 328, 370
CviAII CATG 5 cut(s) 13, 67, 175, 379, 394
CviQI GTAC 2 cut(s) 328, 370
EaeI YGGCCR 2 cut(s) 252, 364
EagI CGGCCG 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 249, 255
Eco147I AGGCCT 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 375
Eco52I CGGCCG 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 433
Eco88I CYCGRG 2 cut(s) 242, 434
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 249, 255
EcoT22I ATGCAT 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 249, 255
FaeI CATG 5 cut(s) 16, 70, 178, 382, 397
FaiI YATR 8 cut(s) 14, 68, 176, 200, 360, 380, 395, 454
FatI CATG 5 cut(s) 12, 66, 174, 378, 393
Fnu4HI GCNGC 4 cut(s) 30, 45, 99, 102
FokI GGATG 3 cut(s) 297, 414, 455
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 4 cut(s) 30, 45, 99, 102
GluI GCNGC 4 cut(s) 30, 45, 99, 102
HaeIII GGCC 7 cut(s) 5, 87, 187, 254, 366, 443, 540
HapII CCGG 2 cut(s) 53, 367
Hin1II CATG 5 cut(s) 16, 70, 178, 382, 397
HinfI GANTC 5 cut(s) 214, 245, 321, 410, 483
HpaII CCGG 2 cut(s) 53, 367
HphI GGTGA 2 cut(s) 106, 339
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 401, 482
Hpy188III TCNNGA 2 cut(s) 211, 242
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 5 cut(s) 172, 236, 281, 421, 442
HpyCH4III ACNGT 3 cut(s) 131, 193, 332
HpyCH4V TGCA 5 cut(s) 169, 174, 405, 416, 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 44, 53, 449
Hsp92II CATG 5 cut(s) 16, 70, 178, 382, 397
LmnI GCTCC 2 cut(s) 313, 430
LpnPI CCDG 9 cut(s) 66, 69, 76, 130, 307, 336, 358, 363, 380
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 2 cut(s) 392, 519
MaeIII GTNAC 2 cut(s) 131, 345
MboII GAAGA 2 cut(s) 174, 214
MhlI GDGCHC 3 cut(s) 318, 339, 435
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 3 cut(s) 208, 254, 404
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 7 cut(s) 16, 19, 58, 98, 151, 430, 433
Mox20I TGGCCA 1 cut(s) 254
Mph1103I ATGCAT 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 206
MscI TGGCCA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 2 cut(s) 53, 367
MspR9I CCNGG 2 cut(s) 53, 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 35, 44, 53, 449
NciI CCSGG 1 cut(s) 53
NlaIII CATG 5 cut(s) 16, 70, 178, 382, 397
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 2 cut(s) 131, 345
NsiI ATGCAT 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 434
PceI AGGCCT 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 321, 483
PflFI GACNNNGTC 2 cut(s) 217, 491
PflMI CCANNNNNTGG 2 cut(s) 83, 155
PkrI GCNGC 4 cut(s) 31, 46, 100, 103
PleI GAGTC 3 cut(s) 208, 253, 404
PpsI GAGTC 3 cut(s) 208, 253, 404
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 375
PspXI VCTCGAGB 1 cut(s) 434
PsyI GACNNNGTC 2 cut(s) 217, 491
RsaI GTAC 2 cut(s) 329, 371
RsaNI GTAC 2 cut(s) 328, 370
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 435
SatI GCNGC 4 cut(s) 30, 45, 99, 102
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 3 cut(s) 208, 254, 404
ScrFI CCNGG 2 cut(s) 53, 351
SduI GDGCHC 3 cut(s) 318, 339, 435
SetI ASST 8 cut(s) 106, 143, 183, 228, 273, 352, 390, 435
SfaNI GCATC 2 cut(s) 392, 519
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 434
SinI GGWCC 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 89, 434
SmoI CTYRAG 2 cut(s) 89, 434
Sse9I AATT 1 cut(s) 302
SseBI AGGCCT 1 cut(s) 540
SsiI CCGC 6 cut(s) 30, 42, 45, 99, 159, 277
SstI GAGCTC 1 cut(s) 435
StuI AGGCCT 1 cut(s) 540
StyD4I CCNGG 2 cut(s) 51, 349
StyI CCWWGG 2 cut(s) 249, 255
TaaI ACNGT 3 cut(s) 131, 193, 332
TaqI TCGA 3 cut(s) 210, 435, 486
TasI AATT 1 cut(s) 302
TauI GCSGC 3 cut(s) 32, 47, 101
TfiI GAWTC 2 cut(s) 321, 483
TscAI CASTG 3 cut(s) 88, 136, 512
TseFI GTSAC 2 cut(s) 131, 345
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 131, 345
TspDTI ATGAA 4 cut(s) 191, 215, 457, 508
TspGWI ACGGA 3 cut(s) 333, 461, 485
TspRI CASTG 3 cut(s) 88, 136, 512
Tth111I GACNNNGTC 2 cut(s) 217, 491
Van91I CCANNNNNTGG 2 cut(s) 83, 155
VpaK11BI GGWCC 1 cut(s) 375
XapI RAATTY 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.