RLG00000019345

Leucine-rich repeat extensin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018341
Physical Location & Seq
Forward (+)
50598897 .. 50600120
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019345

Sequence Viewer

Length: 1224 bp
ATGAAAGCATGCATAGTATTCATTGCTATTCTCTTAGCTCTGCTTCTGATCATCCAAACAATCACAGAAGCTAAACACCTGCAAAATGAGGAAGAAGATAACGTAGCAGAAGAAAAAAGAAGCAGGAGCAGTAGAAGCAGAAGCAGAGGAAGAGGCCGCAATGGTGGATCAAGGTCAAGAACAAGATCAAACTGTGATCCATTATTCCAGTACCTATTTGGAACCTGTGGCCAATGGCCTTTCCCTACCAACCCTTCCCCAAACAACCCTTTTGCCCCAACACCAAGACCCTCTCCTCGGCCGCCGCGAGTTCCACCTACTCCTATACGCCCCTTCCCACCCGTAATCCCATCCCCACCGCCAGTAGTACCATCTCCACCACCTTTGCCGCCACCAATTCCTCCACCACCTTTACCACCAATTCCTCCACCCCCTTCAGCACCGCCACCATCCTCACCTCCACCATCATCACCACCTCCATCACTGCCACCACCTTCTACCTCACCGCCACCACCTTCTCTACCTCCACCGCCTTTGGTTCCATCGCCACCTCCGCCTTCTCCACCACCACCAGAATTCCTGCCCCCACCAATACCGATCATCTATCCACCACCACCAGATGAAGACATACAACCACCCACACTTCCGTGGCTGTCACCCCCCGACACCTTCCCTGATACACCACCAACCATTCCAGCTCCACCACTAGTGCCAGATATTGACCTTCCTCCACCCGCATTACCAGACCTGCCACCATCTGGTGATCAGTCTAGTACTCCAGCAACACCACTGGTTCCAATTTTCACTCCACCACTGCCTGAAGATGAGCCTACTCCAACCTTACCACCCACAGTTGCATTACCACCACGGATACCTATACCTGATCAGCCTTCTCCAATATTTACATTCCCACCACCAATACCTGTTGATCAGCCTTCTCCAATATTACTACCACCGGAAGATCCATTTCCGTTTAACACACCACCTATCTTACCATTTCCAACTACACCAGACACCGGTAATAGTGGTGGTGGTGTGATTGATCAGCCACCCTCTTTTGATCCACTACCACAAACACCAGTCTTTCTGCCACCTCCCATTCCTGAAATTCCCCAAAATCCACAGCAACCACCAGTAGTACTTCCATTTGAGTCTAGTCCGCCAGCACCAGATATAGGGTTTAATGAGCCACTGCAGCAGCCATTGGAGCCCACACTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

43.25

Weight (kDa)

4.38

Isoelectric Point (pI)

112.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018341)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03660
prunus_persica Prupe.3G095500_v2.0.a1
rosa_laevigata RLG00000019345
rosa_multiflora Rmu_sc0017323.1_g000006
rosa_roxburghii Rroxscaffold_2G00111030
rosa_rugosa Rorug02G0312300
rosa_samantha Rh2AG365100 Rh2CG348400 Rh2DG387600
rosa_wichuraiana Rw2G029750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 87
Acc36I ACCTGC 2 cut(s) 87, 756
AccB7I CCANNNNNTGG 1 cut(s) 758
AccII CGCG 1 cut(s) 307
AclWI GGATC 4 cut(s) 175, 191, 956, 1055
AcoI YGGCCR 2 cut(s) 229, 299
AcsI RAATTY 2 cut(s) 575, 1107
AcuI CTGAAG 2 cut(s) 420, 840
AfaI GTAC 4 cut(s) 212, 369, 775, 1140
AfiI CCNNNNNNNGG 4 cut(s) 297, 758, 1016, 1175
AgeI ACCGGT 1 cut(s) 1016
AhlI ACTAGT 1 cut(s) 706
AleI CACNNNNGTG 1 cut(s) 646
AluBI AGCT 3 cut(s) 38, 71, 698
AluI AGCT 3 cut(s) 38, 71, 698
AlwI GGATC 4 cut(s) 175, 191, 956, 1055
AoxI GGCC 4 cut(s) 154, 229, 236, 299
ApeKI GCWGC 2 cut(s) 1195, 1198
ApoI RAATTY 2 cut(s) 575, 1107
AsiGI ACCGGT 1 cut(s) 1016
AsuHPI GGTGA 5 cut(s) 447, 462, 495, 648, 773
BalI TGGCCA 1 cut(s) 231
BanII GRGCYC 1 cut(s) 1212
BbsI GAAGAC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 1207, 1210
BccI CCATC 7 cut(s) 358, 379, 457, 472, 487, 550, 763
BciVI GTATCC 1 cut(s) 864
BclI TGATCA 5 cut(s) 48, 763, 883, 928, 1042
BcuI ACTAGT 1 cut(s) 706
BfaI CTAG 3 cut(s) 707, 771, 1155
BfmI CTRYAG 1 cut(s) 1193
BfuAI ACCTGC 2 cut(s) 87, 756
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 6 cut(s) 157, 302, 305, 389, 1196, 1199
BlsI GCNGC 6 cut(s) 158, 303, 306, 390, 1197, 1200
BmcAI AGTACT 2 cut(s) 775, 1140
BmiI GGNNCC 4 cut(s) 223, 540, 795, 1209
BpiI GAAGAC 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 762
BsaJI CCNNGG 3 cut(s) 296, 647, 866
BsaWI WCCGGW 2 cut(s) 955, 1016
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 758, 1016, 1175
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 5 cut(s) 208, 362, 795, 1079, 1133
Bse3DI GCAATG 2 cut(s) 21, 166
BseDI CCNNGG 3 cut(s) 296, 647, 866
BseGI GGATG 3 cut(s) 51, 350, 449
BseLI CCNNNNNNNGG 4 cut(s) 297, 758, 1016, 1175
BseMI GCAATG 2 cut(s) 21, 166
BseNI ACTGG 5 cut(s) 208, 362, 795, 1079, 1133
BseRI GAGGAG 1 cut(s) 285
BseX3I CGGCCG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 1207, 1210
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 4 cut(s) 156, 231, 238, 301
BshTI ACCGGT 1 cut(s) 1016
BsiEI CGRYCG 1 cut(s) 302
BsiSI CCGG 2 cut(s) 956, 1017
BslI CCNNNNNNNGG 4 cut(s) 297, 758, 1016, 1175
BsnI GGCC 4 cut(s) 156, 231, 238, 301
Bsp1286I GDGCHC 1 cut(s) 1212
BspANI GGCC 4 cut(s) 156, 231, 238, 301
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 223, 540, 795, 1209
BspMAI CTGCAG 1 cut(s) 1197
BspMI ACCTGC 2 cut(s) 87, 756
BspPI GGATC 4 cut(s) 175, 191, 956, 1055
BsrDI GCAATG 2 cut(s) 21, 166
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 5 cut(s) 208, 362, 795, 1079, 1133
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 3 cut(s) 296, 647, 866
Bst4CI ACNGT 2 cut(s) 194, 853
Bst6I CTCTTC 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 10, 1164
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 2 cut(s) 647, 866
BstF5I GGATG 3 cut(s) 51, 350, 449
BstFNI CGCG 1 cut(s) 307
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 5 cut(s) 135, 553, 1195, 1207, 1216
BstNSI RCATGY 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 1193
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 1207, 1210
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BstZI CGGCCG 1 cut(s) 299
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 4 cut(s) 156, 231, 238, 301
BtgI CCRYGG 2 cut(s) 647, 866
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 3 cut(s) 51, 350, 449
BtsI GCAGTG 4 cut(s) 482, 812, 1190, 1214
BtsIMutI CAGTG 5 cut(s) 482, 788, 812, 1190, 1214
BveI ACCTGC 2 cut(s) 87, 756
Cac8I GCNNGC 2 cut(s) 10, 1164
Cfr10I RCCGGY 1 cut(s) 1016
Csp6I GTAC 4 cut(s) 211, 368, 774, 1139
CspAI ACCGGT 1 cut(s) 1016
CspCI CAANNNNNGTGG 4 cut(s) 366, 401, 516, 551
CviAII CATG 1 cut(s) 9
CviQI GTAC 4 cut(s) 211, 368, 774, 1139
DdeI CTNAG 1 cut(s) 34
EaeI YGGCCR 2 cut(s) 229, 299
EagI CGGCCG 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 2 cut(s) 543, 1149
EclXI CGGCCG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 1212
Eco52I CGGCCG 1 cut(s) 299
Eco57I CTGAAG 2 cut(s) 420, 840
EcoRI GAATTC 1 cut(s) 575
EcoT22I ATGCAT 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 1212
FaeI CATG 1 cut(s) 12
FaiI YATR 6 cut(s) 10, 14, 326, 629, 878, 1175
FatI CATG 1 cut(s) 8
FauI CCCGC 1 cut(s) 742
FbaI TGATCA 5 cut(s) 48, 763, 883, 928, 1042
Fnu4HI GCNGC 6 cut(s) 157, 302, 305, 389, 1196, 1199
FokI GGATG 3 cut(s) 38, 337, 436
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 6 cut(s) 157, 302, 305, 389, 1196, 1199
FspBI CTAG 3 cut(s) 707, 771, 1155
GluI GCNGC 6 cut(s) 157, 302, 305, 389, 1196, 1199
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 4 cut(s) 156, 231, 238, 301
HapII CCGG 2 cut(s) 956, 1017
Hin1II CATG 1 cut(s) 12
HinfI GANTC 1 cut(s) 1151
HpaII CCGG 2 cut(s) 956, 1017
HphI GGTGA 5 cut(s) 447, 462, 495, 648, 773
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 2 cut(s) 177, 1103
HpyCH4III ACNGT 2 cut(s) 194, 853
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 12, 82, 857, 1195
HpyF10VI GCNNNNNNNGC 5 cut(s) 135, 553, 1195, 1207, 1216
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 12
Ksp22I TGATCA 5 cut(s) 48, 763, 883, 928, 1042
LmnI GCTCC 3 cut(s) 126, 703, 1207
Lsp1109I GCAGC 2 cut(s) 1207, 1210
MaeI CTAG 3 cut(s) 707, 771, 1155
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 654
MboII GAAGA 7 cut(s) 104, 107, 122, 162, 635, 833, 971
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 1 cut(s) 1212
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 5 cut(s) 396, 420, 575, 798, 1107
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 1 cut(s) 1160
MmeI TCCRAC 2 cut(s) 860, 1025
Mox20I TGGCCA 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 14
MscI TGGCCA 1 cut(s) 231
MseI TTAA 3 cut(s) 975, 1182, 1222
MslI CAYNNNNRTG 1 cut(s) 646
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 2 cut(s) 956, 1017
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 5 cut(s) 135, 553, 1195, 1207, 1216
NlaIII CATG 1 cut(s) 12
NlaIV GGNNCC 4 cut(s) 223, 540, 795, 1209
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 654
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 646
PaeI GCATGC 1 cut(s) 12
PaqCI CACCTGC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 758
PinAI ACCGGT 1 cut(s) 1016
PkrI GCNGC 6 cut(s) 158, 303, 306, 390, 1197, 1200
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
PspN4I GGNNCC 4 cut(s) 223, 540, 795, 1209
PstI CTGCAG 1 cut(s) 1197
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 4 cut(s) 212, 369, 775, 1140
RsaNI GTAC 4 cut(s) 211, 368, 774, 1139
RseI CAYNNNNRTG 1 cut(s) 646
SaqAI TTAA 3 cut(s) 975, 1182, 1222
SatI GCNGC 6 cut(s) 157, 302, 305, 389, 1196, 1199
ScaI AGTACT 2 cut(s) 775, 1140
SchI GAGTC 1 cut(s) 1160
SduI GDGCHC 1 cut(s) 1212
SfcI CTRYAG 1 cut(s) 1193
SmiMI CAYNNNNRTG 1 cut(s) 646
SpeI ACTAGT 1 cut(s) 706
SphI GCATGC 1 cut(s) 12
Sse9I AATT 5 cut(s) 396, 420, 575, 798, 1107
SspI AATATT 2 cut(s) 900, 945
SspMI CTAG 3 cut(s) 707, 771, 1155
TaaI ACNGT 2 cut(s) 194, 853
TaiI ACGT 1 cut(s) 105
TasI AATT 5 cut(s) 396, 420, 575, 798, 1107
TatI WGTACW 2 cut(s) 773, 1138
TauI GCSGC 4 cut(s) 159, 304, 307, 391
Tru1I TTAA 3 cut(s) 975, 1182, 1222
Tru9I TTAA 3 cut(s) 975, 1182, 1222
TscAI CASTG 5 cut(s) 489, 795, 819, 1197, 1221
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 2 cut(s) 1195, 1198
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 3 cut(s) 10, 17, 636
TspGWI ACGGA 3 cut(s) 636, 883, 960
TspRI CASTG 5 cut(s) 489, 795, 819, 1197, 1221
Van91I CCANNNNNTGG 1 cut(s) 758
XapI RAATTY 2 cut(s) 575, 1107
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XspI CTAG 3 cut(s) 707, 771, 1155
ZrmI AGTACT 2 cut(s) 775, 1140
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.