FvH4_1g03970

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015515
Physical Location & Seq
Reverse (-)
2113642 .. 2114848
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03970.t2

Sequence Viewer

Length: 435 bp
ATGATCACAACTCATCCACAATATCTGCCTTACCTTTCATTACTCCTCGTGCTCTTATTTCCACAGCTTTTCCAAACATCAAACGCCGACGTTGGCACTGCTGCTCAGTATGCTCCCCCATATTTACCCACCGACTGTTATGGAAGCGACTCGTCACAGTTTCCGTCAAGTAACTTGTTTGCGGCGGCCGGAGATGGAATATGGGACAACGGAGCGTCATGTGGGAGGCAGTACTTGGTGAGATGCATTAGCGCAGCTCAAACGGGGACGTGTGTTCCGGACAAGACCATTCAGATCAGGATTGTGGAGTATGCTGCCAGCGTTACTTCACAGCCTTCTGCGGCCGGCACCACCATGGTGTTGTCGCAGACGGCTTTCGCTGCTATTGCCAACTCATCGGCTACTTCCGTCAACATTGAGTTCCAACAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

145

Amino Acids

15.24

Weight (kDa)

4.4

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 57 - 133 3.7e-09 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015515)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03970 FvH4_1g03970 FvH4_1g03970
malus_domestica MD02G1038100.v1.1
prunus_persica Prupe.7G237200_v2.0.a1
pyrus_communis pycom02g03130 pycom15g16020
rosa_chinensis RchiOBHm_Chr2g0089451
rosa_laevigata RLG00000016030
rosa_multiflora Rmu_sc0000197.1_g000007
rosa_roxburghii Rroxscaffold_2G00151920
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2BG044700 Rh2CG046500 Rh2DG046100
rosa_wichuraiana Rw2G003650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 3 cut(s) 182, 185, 341
AcoI YGGCCR 2 cut(s) 186, 342
AfaI GTAC 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 269
AjiI CACGTC 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 2 cut(s) 67, 257
AluI AGCT 2 cut(s) 67, 257
Alw21I GWGCWC 1 cut(s) 54
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 2 cut(s) 186, 342
ApeKI GCWGC 4 cut(s) 101, 254, 314, 380
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 250
BanI GGYRCC 1 cut(s) 347
BauI CACGAG 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 88, 266, 301, 367
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 387
BclI TGATCA 1 cut(s) 3
BisI GCNGC 7 cut(s) 102, 183, 186, 255, 315, 342, 381
BlsI GCNGC 7 cut(s) 103, 184, 187, 256, 316, 343, 382
BmcAI AGTACT 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 349
BmsI GCATC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 35
BseX3I CGGCCG 2 cut(s) 186, 342
BseXI GCAGC 4 cut(s) 88, 266, 301, 367
Bsh1285I CGRYCG 2 cut(s) 189, 345
BshFI GGCC 2 cut(s) 188, 344
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 2 cut(s) 189, 345
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 3 cut(s) 189, 278, 345
BslFI GGGAC 2 cut(s) 218, 280
BsmFI GGGAC 2 cut(s) 218, 280
BsnI GGCC 2 cut(s) 188, 344
Bsp1286I GDGCHC 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 3, 294
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 3 cut(s) 182, 185, 341
BspANI GGCC 2 cut(s) 188, 344
BspCNI CTCAG 1 cut(s) 118
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 3, 294
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 137, 159
BstC8I GCNNGC 2 cut(s) 319, 346
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 6, 297
BstMBI GATC 2 cut(s) 3, 294
BstMCI CGRYCG 2 cut(s) 189, 345
BstMWI GCNNNNNNNGC 3 cut(s) 110, 380, 386
BstV1I GCAGC 4 cut(s) 88, 266, 301, 367
BstZI CGGCCG 2 cut(s) 186, 342
BsuRI GGCC 2 cut(s) 188, 344
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 319, 346
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 344
CseI GACGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 219, 355
CviJI RGCY 7 cut(s) 67, 188, 257, 334, 344, 374, 401
CviKI_1 RGCY 7 cut(s) 67, 188, 257, 334, 344, 374, 401
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 5, 296
DpnII GATC 2 cut(s) 3, 294
EaeI YGGCCR 2 cut(s) 186, 342
EagI CGGCCG 2 cut(s) 186, 342
EclXI CGGCCG 2 cut(s) 186, 342
Eco130I CCWWGG 1 cut(s) 354
Eco52I CGGCCG 2 cut(s) 186, 342
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 222, 358
FaiI YATR 7 cut(s) 111, 121, 141, 202, 220, 312, 356
FaqI GGGAC 2 cut(s) 218, 280
FatI CATG 2 cut(s) 218, 354
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 7 cut(s) 102, 183, 186, 255, 315, 342, 381
Fsp4HI GCNGC 7 cut(s) 102, 183, 186, 255, 315, 342, 381
GlaI GCGC 1 cut(s) 253
GluI GCNGC 7 cut(s) 102, 183, 186, 255, 315, 342, 381
HaeIII GGCC 2 cut(s) 188, 344
HapII CCGG 3 cut(s) 189, 278, 345
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 222, 358
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 1 cut(s) 149
HpaII CCGG 3 cut(s) 189, 278, 345
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 2 cut(s) 278, 298
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 137, 159
HpyCH4IV ACGT 2 cut(s) 90, 269
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 380, 386
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 90, 269
Hsp92II CATG 2 cut(s) 222, 358
HspAI GCGC 1 cut(s) 252
Kpn2I TCCGGA 1 cut(s) 277
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 294
LmnI GCTCC 2 cut(s) 118, 212
LpnPI CCDG 6 cut(s) 202, 283, 291, 331, 358, 413
Lsp1109I GCAGC 4 cut(s) 88, 266, 301, 367
LweI GCATC 1 cut(s) 233
MaeII ACGT 2 cut(s) 90, 269
MaeIII GTNAC 3 cut(s) 153, 170, 322
MalI GATC 2 cut(s) 5, 296
MboI GATC 2 cut(s) 3, 294
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 2 cut(s) 56, 219
Mph1103I ATGCAT 1 cut(s) 248
MroI TCCGGA 1 cut(s) 277
MroNI GCCGGC 1 cut(s) 344
MslI CAYNNNNRTG 2 cut(s) 353, 356
MspI CCGG 3 cut(s) 189, 278, 345
MwoI GCNNNNNNNGC 3 cut(s) 110, 380, 386
NaeI GCCGGC 1 cut(s) 346
NcoI CCATGG 1 cut(s) 354
NdeII GATC 2 cut(s) 3, 294
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 2 cut(s) 222, 358
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 356
PdiI GCCGGC 1 cut(s) 346
PkrI GCNGC 7 cut(s) 103, 184, 187, 256, 316, 343, 382
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 2 cut(s) 353, 356
SatI GCNGC 7 cut(s) 102, 183, 186, 255, 315, 342, 381
Sau3AI GATC 2 cut(s) 3, 294
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 54
SetI ASST 6 cut(s) 36, 69, 93, 259, 272, 432
SfaNI GCATC 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 353, 356
SsiI CCGC 3 cut(s) 182, 185, 341
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 137, 159
TaiI ACGT 2 cut(s) 93, 272
TatI WGTACW 1 cut(s) 231
TauI GCSGC 3 cut(s) 185, 188, 344
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 4 cut(s) 101, 254, 314, 380
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 3 cut(s) 153, 225, 397
TspRI CASTG 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.