Rh2BG044700

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015515
Physical Location & Seq
Reverse (-)
3187893 .. 3189856
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG044700.1

Sequence Viewer

Length: 423 bp
ATGACCAGAACACTTTTGCTATTCCTTTCGTTATTCATCATCCTCTTGTTTACACAGCTTTTCCAAACTTCAAACGGCGACGTTGGCACTGCTGCTCAGTATTCTCCCCCATATCTACCCACGGACTGTTATGGAAGCGACTCGTCGCAGTTTCCGTCGAGTAATTTGTTTGCGGCGGCCGGAGATGGAATATGGGACAATGGAGCTTCGTGTGGGAGGCAGTACTTGGTGAGATGCATTAGCGCGGCCGTAACGGGGACGTGTATTCCGGACACGACGATTCAGATAAGAATTGTGGACTATGCTGCCGGCGTTGCTTCGAAGCCGTCGGCGGATGGCACCACCATGGTGTTGTCTCAGACGGCTTTCGCTGCTATTGCCAACTCAACGGCTACTTCCATCAACATTGAATTTCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

140

Amino Acids

14.78

Weight (kDa)

4.23

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 63 - 138 3.8e-09 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015515)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03970 FvH4_1g03970 FvH4_1g03970
malus_domestica MD02G1038100.v1.1
prunus_persica Prupe.7G237200_v2.0.a1
pyrus_communis pycom02g03130 pycom15g16020
rosa_chinensis RchiOBHm_Chr2g0089451
rosa_laevigata RLG00000016030
rosa_multiflora Rmu_sc0000197.1_g000007
rosa_roxburghii Rroxscaffold_2G00151920
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2BG044700 Rh2CG046500 Rh2DG046100
rosa_wichuraiana Rw2G003650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 4 cut(s) 173, 176, 245, 332
AcoI YGGCCR 2 cut(s) 177, 246
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 3 cut(s) 72, 410, 416
AjiI CACGTC 1 cut(s) 261
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 2 cut(s) 58, 206
AluI AGCT 2 cut(s) 58, 206
Alw26I GTCTC 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 2 cut(s) 177, 246
ApeKI GCWGC 3 cut(s) 92, 305, 371
ApoI RAATTY 1 cut(s) 410
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 79, 292, 358
BccI CCATC 3 cut(s) 179, 329, 407
BceAI ACGGC 5 cut(s) 91, 233, 310, 378, 405
BcoDI GTCTC 1 cut(s) 360
BisI GCNGC 6 cut(s) 93, 174, 177, 246, 306, 372
BlsI GCNGC 6 cut(s) 94, 175, 178, 247, 307, 373
BmcAI AGTACT 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 340
BmsI GCATC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 120, 345
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse118I RCCGGY 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 120, 345
BseGI GGATG 2 cut(s) 39, 340
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 110, 371
BseX3I CGGCCG 2 cut(s) 177, 246
BseXI GCAGC 3 cut(s) 79, 292, 358
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 2 cut(s) 180, 249
BshFI GGCC 2 cut(s) 179, 248
BshNI GGYRCC 1 cut(s) 338
BsiEI CGRYCG 2 cut(s) 180, 249
BsiSI CCGG 3 cut(s) 180, 269, 309
BslFI GGGAC 2 cut(s) 209, 271
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 2 cut(s) 209, 271
BsnI GGCC 2 cut(s) 179, 248
Bsp119I TTCGAA 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 4 cut(s) 173, 176, 245, 332
BspANI GGCC 2 cut(s) 179, 248
BspCNI CTCAG 2 cut(s) 109, 370
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 340
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 120, 345
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 128, 420
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 96, 357
BstDSI CCRYGG 2 cut(s) 120, 345
BstF5I GGATG 2 cut(s) 39, 340
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 360
BstMCI CGRYCG 2 cut(s) 180, 249
BstMWI GCNNNNNNNGC 4 cut(s) 84, 314, 371, 377
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 3 cut(s) 79, 292, 358
BstZI CGGCCG 2 cut(s) 177, 246
BsuRI GGCC 2 cut(s) 179, 248
BtgI CCRYGG 2 cut(s) 120, 345
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 39, 340
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 308
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 346
CviJI RGCY 7 cut(s) 58, 179, 206, 248, 325, 365, 392
CviKI_1 RGCY 7 cut(s) 58, 179, 206, 248, 325, 365, 392
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 96, 357
EaeI YGGCCR 2 cut(s) 177, 246
EagI CGGCCG 2 cut(s) 177, 246
EciI GGCGGA 1 cut(s) 347
EclXI CGGCCG 2 cut(s) 177, 246
Eco130I CCWWGG 1 cut(s) 345
Eco52I CGGCCG 2 cut(s) 177, 246
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 1 cut(s) 349
FaiI YATR 5 cut(s) 112, 132, 193, 303, 347
FaqI GGGAC 2 cut(s) 209, 271
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 6 cut(s) 93, 174, 177, 246, 306, 372
FokI GGATG 2 cut(s) 26, 347
Fsp4HI GCNGC 6 cut(s) 93, 174, 177, 246, 306, 372
GlaI GCGC 1 cut(s) 244
GluI GCNGC 6 cut(s) 93, 174, 177, 246, 306, 372
HaeIII GGCC 2 cut(s) 179, 248
HapII CCGG 3 cut(s) 180, 269, 309
HhaI GCGC 1 cut(s) 245
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 140, 280
HpaII CCGG 3 cut(s) 180, 269, 309
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 51, 298
Hpy188I TCNGA 2 cut(s) 285, 360
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 51, 298
Hpy99I CGWCG 5 cut(s) 83, 148, 160, 280, 331
HpyCH4III ACNGT 2 cut(s) 128, 420
HpyCH4IV ACGT 2 cut(s) 81, 260
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 314, 371, 377
HpyF3I CTNAG 2 cut(s) 96, 357
HpySE526I ACGT 2 cut(s) 81, 260
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 268
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 4 cut(s) 19, 193, 282, 322
Lsp1109I GCAGC 3 cut(s) 79, 292, 358
LweI GCATC 1 cut(s) 224
MaeII ACGT 2 cut(s) 81, 260
MaeIII GTNAC 1 cut(s) 250
MluCI AATT 3 cut(s) 163, 291, 410
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 2 cut(s) 53, 210
Mph1103I ATGCAT 1 cut(s) 239
MroI TCCGGA 1 cut(s) 268
MroNI GCCGGC 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 344, 347
MspI CCGG 3 cut(s) 180, 269, 309
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 84, 314, 371, 377
NaeI GCCGGC 1 cut(s) 310
NcoI CCATGG 1 cut(s) 345
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 239
NspV TTCGAA 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 6 cut(s) 94, 175, 178, 247, 307, 373
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 340
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 344, 347
SatI GCNGC 6 cut(s) 93, 174, 177, 246, 306, 372
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 1 cut(s) 134
SetI ASST 4 cut(s) 60, 84, 208, 263
SfaNI GCATC 1 cut(s) 224
SfuI TTCGAA 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 344, 347
Sse9I AATT 3 cut(s) 163, 291, 410
SsiI CCGC 4 cut(s) 173, 176, 245, 332
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 128, 420
TaiI ACGT 2 cut(s) 84, 263
TaqI TCGA 2 cut(s) 158, 320
TasI AATT 3 cut(s) 163, 291, 410
TatI WGTACW 1 cut(s) 222
TauI GCSGC 3 cut(s) 176, 179, 248
TfiI GAWTC 1 cut(s) 280
TscAI CASTG 1 cut(s) 94
TseI GCWGC 3 cut(s) 92, 305, 371
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 2 cut(s) 137, 144
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.