pycom15g16020

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015515
Physical Location & Seq
Reverse (-)
11163941 .. 11164464
524 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16020.2

Sequence Viewer

Length: 423 bp
ATGTCCAGAACTCACAATCCATGTCAATGGCTTCCTGTCCTCCTCTTCCTTCTACAGTTTTTCCACACATCAAACGGCGATGTTGGCACTGCTGCCCAGTACCCTCCTCCATATCTACCGACGGCATGTTTTGGAAGCGATTCGTTGCAGTTTCCGGCGAGTAATCTATTGGCTGCGGCCGGAGACGAAATATGGTACAATGGGGCGTCGTGTGGGAGAAAGTACTTGGTGAGATGCATAAGTGCAGAACAAACGGGGACGTGTGTTCCGGACAAGACGATTCAAGTGAGGATTGTGGACTATGCCGGAGATATTAAAACAGTGCCATCAGTTTCCGGCACCACCATGGTCTTGTCCCAAACAGCCTTTGGATCTGTTGCTAATTCAACGGCTAAATCCATTAACATTGAGTTTCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

141

Amino Acids

15.08

Weight (kDa)

6.02

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015515)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03970 FvH4_1g03970 FvH4_1g03970
malus_domestica MD02G1038100.v1.1
prunus_persica Prupe.7G237200_v2.0.a1
pyrus_communis pycom02g03130 pycom15g16020
rosa_chinensis RchiOBHm_Chr2g0089451
rosa_laevigata RLG00000016030
rosa_multiflora Rmu_sc0000197.1_g000007
rosa_roxburghii Rroxscaffold_2G00151920
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2BG044700 Rh2CG046500 Rh2DG046100
rosa_wichuraiana Rw2G003650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 3 cut(s) 101, 197, 224
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 2 cut(s) 284, 387
AjiI CACGTC 1 cut(s) 261
AloI GAACNNNNNNTCC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 379
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 92, 173
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 241
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 79, 160
BccI CCATC 1 cut(s) 334
BceAI ACGGC 3 cut(s) 91, 138, 405
BcoDI GTCTC 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 53
BisI GCNGC 3 cut(s) 93, 174, 177
BlsI GCNGC 3 cut(s) 94, 175, 178
BmcAI AGTACT 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 340
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 32, 96
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 79, 160
BsgI GTGCAG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 180
BsiSI CCGG 5 cut(s) 155, 180, 269, 306, 336
BslFI GGGAC 2 cut(s) 271, 340
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 271, 340
BsnI GGCC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 1 cut(s) 371
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 179
BspEI TCCGGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 371
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 57, 322
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 345
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 371
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 79, 160
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 1 cut(s) 371
BstZI CGGCCG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 327
CseI GACGC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 100, 196, 223
CviAII CATG 3 cut(s) 21, 126, 346
CviJI RGCY 5 cut(s) 31, 173, 179, 365, 392
CviKI_1 RGCY 5 cut(s) 31, 173, 179, 365, 392
CviQI GTAC 3 cut(s) 100, 196, 223
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 177
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 3 cut(s) 24, 129, 349
FaiI YATR 7 cut(s) 22, 112, 127, 193, 239, 303, 347
FaqI GGGAC 2 cut(s) 271, 340
FatI CATG 3 cut(s) 20, 125, 345
Fnu4HI GCNGC 3 cut(s) 93, 174, 177
Fsp4HI GCNGC 3 cut(s) 93, 174, 177
GluI GCNGC 3 cut(s) 93, 174, 177
HaeIII GGCC 1 cut(s) 179
HapII CCGG 5 cut(s) 155, 180, 269, 306, 336
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 3 cut(s) 24, 129, 349
HinfI GANTC 2 cut(s) 140, 280
HpaII CCGG 5 cut(s) 155, 180, 269, 306, 336
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 6, 269
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 2 cut(s) 124, 211
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 57, 322
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 148, 237, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 3 cut(s) 24, 129, 349
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 1 cut(s) 371
LpnPI CCDG 8 cut(s) 19, 48, 110, 168, 193, 282, 319, 349
Lsp1109I GCAGC 2 cut(s) 79, 160
LweI GCATC 1 cut(s) 224
MaeII ACGT 1 cut(s) 260
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 371
MluCI AATT 1 cut(s) 382
MnlI CCTC 5 cut(s) 50, 53, 114, 117, 282
Mph1103I ATGCAT 1 cut(s) 239
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 2 cut(s) 315, 402
MslI CAYNNNNRTG 2 cut(s) 25, 344
MspI CCGG 5 cut(s) 155, 180, 269, 306, 336
MwoI GCNNNNNNNGC 1 cut(s) 84
NcoI CCATGG 1 cut(s) 345
NdeII GATC 1 cut(s) 371
NlaIII CATG 3 cut(s) 24, 129, 349
NlaIV GGNNCC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 140, 280
PkrI GCNGC 3 cut(s) 94, 175, 178
PspN4I GGNNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 3 cut(s) 101, 197, 224
RsaNI GTAC 3 cut(s) 100, 196, 223
RseI CAYNNNNRTG 2 cut(s) 25, 344
SaqAI TTAA 2 cut(s) 315, 402
SatI GCNGC 3 cut(s) 93, 174, 177
Sau3AI GATC 1 cut(s) 371
ScaI AGTACT 1 cut(s) 224
SetI ASST 1 cut(s) 263
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 25, 344
Sse9I AATT 1 cut(s) 382
SsiI CCGC 1 cut(s) 176
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 57, 322
TaiI ACGT 1 cut(s) 263
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 140, 280
Tru1I TTAA 2 cut(s) 315, 402
Tru9I TTAA 2 cut(s) 315, 402
TscAI CASTG 2 cut(s) 94, 327
TseI GCWGC 2 cut(s) 92, 173
TspRI CASTG 2 cut(s) 94, 327
XceI RCATGY 1 cut(s) 129
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 139
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.