FvH4_1g04950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017570
Physical Location & Seq
Forward (+)
2640362 .. 2641152
791 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04950.t1

Sequence Viewer

Length: 261 bp
ATGGCATCCCACGAGCATGGTAACAATAAAATGAGTGTGTCAATCAATTCTCCGAAAAGTGGCAACACTGCAGAAGCACCATCACCTAAAGGATCATCAGGAGGGCAGTGCTTGTGCTCACCAACAACACATCAAGGCTCATTCCGGTGCCGGTTTCATCGTTCCCGCTCATCCTCAGCTTGGATGAAGCGCTCAAAGTCCATGCCTGCAGCCAATAACTCGCAGACTTCTCCCACATCAGTACTTGATCACTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.12

Weight (kDa)

10.21

Isoelectric Point (pI)

85.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04950
malus_domestica MD02G1048100.v1.1
prunus_persica Prupe.7G230000_v2.0.a1
pyrus_communis pycom02g04020 pycom15g16720
rosa_chinensis RchiOBHm_Chr2g0090561
rosa_roxburghii Rroxscaffold_2G00151030
rosa_rugosa Rorug02G0009100
rosa_samantha Rh2BG053600 Rh2CG055800 Rh2DG054700
rosa_wichuraiana Rw2G004750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 100
AfaI GTAC 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 59, 180
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 100
Aor51HI AGCGCT 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 75, 111
BanI GGYRCC 1 cut(s) 147
BauI CACGAG 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 88
BclI TGATCA 1 cut(s) 247
BfmI CTRYAG 2 cut(s) 69, 207
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 180
Bse118I RCCGGY 1 cut(s) 150
BseGI GGATG 3 cut(s) 5, 170, 189
BseLI CCNNNNNNNGG 2 cut(s) 59, 180
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 145, 151
BslI CCNNNNNNNGG 2 cut(s) 59, 180
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 92, 247
BspACI CCGC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 2 cut(s) 73, 211
BspPI GGATC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssMI GATC 2 cut(s) 92, 247
BssSI CACGAG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 3 cut(s) 5, 170, 189
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 2 cut(s) 95, 250
BstMBI GATC 2 cut(s) 92, 247
BstSFI CTRYAG 2 cut(s) 69, 207
BstV1I GCAGC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 5, 170, 189
BtsI GCAGTG 2 cut(s) 66, 113
BtsIMutI CAGTG 2 cut(s) 66, 113
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 150
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 17, 202
CviJI RGCY 3 cut(s) 138, 179, 212
CviKI_1 RGCY 3 cut(s) 138, 179, 212
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 94, 249
DpnII GATC 2 cut(s) 92, 247
Eco47III AGCGCT 1 cut(s) 191
FaeI CATG 2 cut(s) 20, 205
FaiI YATR 2 cut(s) 18, 203
FatI CATG 2 cut(s) 16, 201
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 157, 196
Fsp4HI GCNGC 1 cut(s) 210
GlaI GCGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 193
HapII CCGG 2 cut(s) 145, 151
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 20, 205
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HpaII CCGG 2 cut(s) 145, 151
HphI GGTGA 2 cut(s) 75, 111
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 71, 209
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 2 cut(s) 20, 205
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 92, 247
LpnPI CCDG 4 cut(s) 84, 158, 164, 219
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 94, 249
MbiI CCGCTC 1 cut(s) 168
MboI GATC 2 cut(s) 92, 247
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 46
MnlI CCTC 2 cut(s) 95, 184
MseI TTAA 1 cut(s) 259
MslI CAYNNNNRTG 2 cut(s) 15, 145
MspI CCGG 2 cut(s) 145, 151
NdeII GATC 2 cut(s) 92, 247
NlaIII CATG 2 cut(s) 20, 205
NlaIV GGNNCC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 149
PstI CTGCAG 2 cut(s) 73, 211
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 15, 145
SaqAI TTAA 1 cut(s) 259
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 92, 247
ScaI AGTACT 1 cut(s) 243
SduI GDGCHC 1 cut(s) 119
SetI ASST 2 cut(s) 88, 181
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 69, 207
SmiMI CAYNNNNRTG 2 cut(s) 15, 145
Sse9I AATT 1 cut(s) 46
SsiI CCGC 1 cut(s) 166
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 241
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TscAI CASTG 2 cut(s) 73, 113
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 146, 200
TspRI CASTG 2 cut(s) 73, 113
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.