Prupe.7G230000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017570
Physical Location & Seq
Reverse (-)
20218645 .. 20219432
788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G230000.1

Sequence Viewer

Length: 246 bp
ATGGCCTCCCATGGCAGTGGCATGACAGTCTCAACTTCTCCAAAAAGTGGTGGCAACGCAGAAGCTGCAGCAATTTCACCAAAAGGAGGCCAATGCTTGTGCTCACCAACAACTCATCAAGGATCGTTCCGGTGCCGGTTTCACCGGTCCCAATCATCGGCTTGGATGAAGCGATCAAAGTCCATGCCCACCAATAATAACTCTGTGGCTTCTTTCTCTCCCAAGTCAGTACTTGAGTCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.45

Weight (kDa)

10.22

Isoelectric Point (pI)

67.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04950
malus_domestica MD02G1048100.v1.1
prunus_persica Prupe.7G230000_v2.0.a1
pyrus_communis pycom02g04020 pycom15g16720
rosa_chinensis RchiOBHm_Chr2g0090561
rosa_roxburghii Rroxscaffold_2G00151030
rosa_rugosa Rorug02G0009100
rosa_samantha Rh2BG053600 Rh2CG055800 Rh2DG054700
rosa_wichuraiana Rw2G004750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 239
AclWI GGATC 1 cut(s) 130
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 47, 86, 157
AgeI ACCGGT 1 cut(s) 144
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 2 cut(s) 3, 88
ApeKI GCWGC 2 cut(s) 65, 68
AsiGI ACCGGT 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 69, 96, 134
AvaII GGWCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 52, 80
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
BmcAI AGTACT 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 134, 149
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 129, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 86, 157
Bse118I RCCGGY 2 cut(s) 135, 144
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 47, 86, 157
BseXI GCAGC 2 cut(s) 52, 80
BshFI GGCC 2 cut(s) 5, 90
BshNI GGYRCC 1 cut(s) 132
BshTI ACCGGT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 3 cut(s) 130, 136, 145
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 47, 86, 157
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 5, 90
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 122, 173
Bsp19I CCATGG 1 cut(s) 10
BspANI GGCC 2 cut(s) 5, 90
BspLI GGNNCC 2 cut(s) 134, 149
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 132
BsrFI RCCGGY 2 cut(s) 135, 144
BssAI RCCGGY 2 cut(s) 135, 144
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 122, 173
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 125, 176
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 122, 173
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 52, 80
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 2 cut(s) 5, 90
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 65
Cfr10I RCCGGY 2 cut(s) 135, 144
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 3 cut(s) 11, 22, 184
CviJI RGCY 5 cut(s) 5, 65, 90, 161, 209
CviKI_1 RGCY 5 cut(s) 5, 65, 90, 161, 209
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 124, 175
DpnII GATC 2 cut(s) 122, 173
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 14, 25, 187
FaiI YATR 3 cut(s) 12, 23, 185
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 10, 21, 183
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 66, 69
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 66, 69
GluI GCNGC 2 cut(s) 66, 69
HaeIII GGCC 2 cut(s) 5, 90
HapII CCGG 3 cut(s) 130, 136, 145
Hin1II CATG 3 cut(s) 14, 25, 187
HinfI GANTC 1 cut(s) 236
HpaII CCGG 3 cut(s) 130, 136, 145
HphI GGTGA 3 cut(s) 69, 96, 134
Hpy166II GTNNAC 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 3 cut(s) 14, 25, 187
Kzo9I GATC 2 cut(s) 122, 173
LpnPI CCDG 3 cut(s) 143, 149, 158
Lsp1109I GCAGC 2 cut(s) 52, 80
MalI GATC 2 cut(s) 124, 175
MboI GATC 2 cut(s) 122, 173
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 72
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 2 cut(s) 16, 80
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 3 cut(s) 130, 136, 145
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 10
NdeII GATC 2 cut(s) 122, 173
NlaIII CATG 3 cut(s) 14, 25, 187
NlaIV GGNNCC 2 cut(s) 134, 149
PflMI CCANNNNNTGG 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 134, 149
PspPI GGNCC 1 cut(s) 147
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 2 cut(s) 122, 173
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 231
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 104
SetI ASST 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 72
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 28
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 229
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 65, 68
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 239
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.