pycom02g04020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017570
Physical Location & Seq
Forward (+)
2663661 .. 2664214
554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04020.1

Sequence Viewer

Length: 363 bp
ATGTCGATAAATCTTTTTTTCCCTTATAATTTTTCTCCTATATATAAAGCCAGTCTGGCAATAAGTTTCCATATAAACTCTTCCTTGGTTAGTATCACTATTCTCTATCAAAACATGGCTTCCCATGGCAATGGTCTGAAAGTCTCAGTTTCTCCAAAAAATGGTGACAACGCAGAAGCTGCATCATTTACTTCACCAAAAGGCCGATGTCTGTGCTCACCAACGACACATCAAGGCTCTTTCCGGTGCCGTTTTCACCGGTCCCAGTCATCGACTTGGATGAAGCGATCAAAGTCCATGCCTAGCAATAATAACTCAGTGGCTTCTTTCTCTCCCACATCAGTGCATGATCAGTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.15

Weight (kDa)

9.95

Isoelectric Point (pI)

62.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04950
malus_domestica MD02G1048100.v1.1
prunus_persica Prupe.7G230000_v2.0.a1
pyrus_communis pycom02g04020 pycom15g16720
rosa_chinensis RchiOBHm_Chr2g0090561
rosa_roxburghii Rroxscaffold_2G00151030
rosa_rugosa Rorug02G0009100
rosa_samantha Rh2BG053600 Rh2CG055800 Rh2DG054700
rosa_wichuraiana Rw2G004750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 161
AccI GTMKAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 179
AsiGI ACCGGT 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 4 cut(s) 176, 186, 210, 248
AvaII GGWCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 234
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 303
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 248, 263
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 84, 124
BsaWI WCCGGW 2 cut(s) 243, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 51, 265
Bse3DI GCAATG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 84, 124
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 159, 330
BseNI ACTGG 2 cut(s) 51, 265
BseXI GCAGC 1 cut(s) 166
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 2 cut(s) 244, 259
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 287, 349
Bsp19I CCATGG 1 cut(s) 124
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 158, 329
BspLI GGNNCC 2 cut(s) 248, 263
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 2 cut(s) 51, 265
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 84, 124
BssMI GATC 2 cut(s) 287, 349
BssT1I CCWWGG 2 cut(s) 84, 124
Bst6I CTCTTC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 145, 316
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 2 cut(s) 290, 352
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 287, 349
BstMWI GCNNNNNNNGC 2 cut(s) 56, 179
BstV1I GCAGC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 131
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 324, 348
CaiI CAGNNNCTG 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 261
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 4 cut(s) 115, 125, 298, 347
CviJI RGCY 6 cut(s) 50, 119, 179, 204, 237, 323
CviKI_1 RGCY 6 cut(s) 50, 119, 179, 204, 237, 323
DdeI CTNAG 2 cut(s) 145, 316
DpnI GATC 2 cut(s) 289, 351
DpnII GATC 2 cut(s) 287, 349
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 84, 124
Eco47I GGWCC 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 84, 124
ErhI CCWWGG 2 cut(s) 84, 124
FaeI CATG 4 cut(s) 118, 128, 301, 350
FaqI GGGAC 1 cut(s) 247
FatI CATG 4 cut(s) 114, 124, 297, 346
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 204
HapII CCGG 2 cut(s) 244, 259
Hin1II CATG 4 cut(s) 118, 128, 301, 350
HpaII CCGG 2 cut(s) 244, 259
HphI GGTGA 4 cut(s) 176, 186, 210, 248
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 182, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 179
HpyF3I CTNAG 2 cut(s) 145, 316
Hsp92II CATG 4 cut(s) 118, 128, 301, 350
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 287, 349
LpnPI CCDG 5 cut(s) 41, 64, 257, 272, 278
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 289, 351
MboI GATC 2 cut(s) 287, 349
MboII GAAGA 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 1 cut(s) 28
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 2 cut(s) 129, 341
MspI CCGG 2 cut(s) 244, 259
MwoI GCNNNNNNNGC 2 cut(s) 56, 179
NcoI CCATGG 1 cut(s) 124
NdeII GATC 2 cut(s) 287, 349
NlaIII CATG 4 cut(s) 118, 128, 301, 350
NlaIV GGNNCC 2 cut(s) 248, 263
NmuCI GTSAC 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 161
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 1 cut(s) 181
PsiI TTATAA 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 248, 263
PspPI GGNCC 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 179
RseI CAYNNNNRTG 2 cut(s) 129, 341
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 287, 349
Sau96I GGNCC 1 cut(s) 261
SduI GDGCHC 1 cut(s) 218
SetI ASST 1 cut(s) 181
SfaNI GCATC 1 cut(s) 191
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 129, 341
Sse9I AATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 2 cut(s) 84, 124
TaqI TCGA 2 cut(s) 5, 272
TasI AATT 1 cut(s) 28
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 2 cut(s) 324, 348
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 2 cut(s) 324, 348
Van91I CCANNNNNTGG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.