divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05570 FvH4_3g15970 FvH4_3g15970 |
| rosa_roxburghii | Rroxscaffold_2G00150330 |
| rosa_samantha | Rh2AG060700 Rh2BG059600 Rh2CG061500 Rh2DG060000 |
| rosa_wichuraiana | Rw2G004920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 422 |
| Acc65I | GGTACC | 1 cut(s) | 839 |
| AccB1I | GGYRCC | 2 cut(s) | 138, 839 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 836 |
| AciI | CCGC | 2 cut(s) | 88, 925 |
| AclWI | GGATC | 1 cut(s) | 944 |
| AcsI | RAATTY | 3 cut(s) | 533, 604, 960 |
| AfaI | GTAC | 2 cut(s) | 43, 841 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 420, 836 |
| AflII | CTTAAG | 1 cut(s) | 860 |
| AgsI | TTSAA | 7 cut(s) | 50, 253, 515, 539, 610, 890, 1010 |
| AjnI | CCWGG | 3 cut(s) | 134, 375, 829 |
| AluBI | AGCT | 5 cut(s) | 55, 457, 524, 613, 718 |
| AluI | AGCT | 5 cut(s) | 55, 457, 524, 613, 718 |
| Alw26I | GTCTC | 3 cut(s) | 278, 572, 589 |
| AlwI | GGATC | 1 cut(s) | 944 |
| AoxI | GGCC | 1 cut(s) | 444 |
| ApeKI | GCWGC | 3 cut(s) | 17, 808, 819 |
| ApoI | RAATTY | 3 cut(s) | 533, 604, 960 |
| Asp718I | GGTACC | 1 cut(s) | 839 |
| AsuHPI | GGTGA | 3 cut(s) | 268, 500, 959 |
| BanI | GGYRCC | 2 cut(s) | 138, 839 |
| BbvI | GCAGC | 3 cut(s) | 29, 795, 806 |
| BccI | CCATC | 2 cut(s) | 104, 830 |
| BceAI | ACGGC | 1 cut(s) | 807 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 787, 821 |
| BciT130I | CCWGG | 3 cut(s) | 136, 377, 831 |
| BcoDI | GTCTC | 3 cut(s) | 278, 572, 589 |
| BfmI | CTRYAG | 1 cut(s) | 415 |
| BfrI | CTTAAG | 1 cut(s) | 860 |
| BfuAI | ACCTGC | 1 cut(s) | 422 |
| BisI | GCNGC | 3 cut(s) | 18, 809, 820 |
| BlsI | GCNGC | 3 cut(s) | 19, 810, 821 |
| Bme1390I | CCNGG | 3 cut(s) | 136, 377, 831 |
| BmiI | GGNNCC | 2 cut(s) | 140, 841 |
| BmrFI | CCNGG | 3 cut(s) | 136, 377, 831 |
| BmsI | GCATC | 1 cut(s) | 333 |
| BpuEI | CTTGAG | 2 cut(s) | 718, 829 |
| BsaBI | GATNNNNATC | 2 cut(s) | 83, 108 |
| BsaJI | CCNNGG | 1 cut(s) | 830 |
| BsaWI | WCCGGW | 1 cut(s) | 733 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 420, 836 |
| Bse8I | GATNNNNATC | 2 cut(s) | 83, 108 |
| BseBI | CCWGG | 3 cut(s) | 136, 377, 831 |
| BseDI | CCNNGG | 1 cut(s) | 830 |
| BseGI | GGATG | 5 cut(s) | 84, 96, 265, 841, 913 |
| BseJI | GATNNNNATC | 2 cut(s) | 83, 108 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 420, 836 |
| BseMII | CTCAG | 2 cut(s) | 613, 905 |
| BseRI | GAGGAG | 3 cut(s) | 89, 288, 309 |
| BseXI | GCAGC | 3 cut(s) | 29, 795, 806 |
| BshFI | GGCC | 1 cut(s) | 446 |
| BshNI | GGYRCC | 2 cut(s) | 138, 839 |
| BsiSI | CCGG | 1 cut(s) | 734 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 420, 836 |
| BsmAI | GTCTC | 3 cut(s) | 278, 572, 589 |
| BsnI | GGCC | 1 cut(s) | 446 |
| Bsp1407I | TGTACA | 1 cut(s) | 41 |
| Bsp143I | GATC | 3 cut(s) | 147, 910, 949 |
| BspACI | CCGC | 2 cut(s) | 88, 925 |
| BspANI | GGCC | 1 cut(s) | 446 |
| BspCNI | CTCAG | 2 cut(s) | 612, 906 |
| BspLI | GGNNCC | 2 cut(s) | 140, 841 |
| BspMAI | CTGCAG | 1 cut(s) | 419 |
| BspMI | ACCTGC | 1 cut(s) | 422 |
| BspPI | GGATC | 1 cut(s) | 944 |
| BspT107I | GGYRCC | 2 cut(s) | 138, 839 |
| BspTI | CTTAAG | 1 cut(s) | 860 |
| BsrGI | TGTACA | 1 cut(s) | 41 |
| BssECI | CCNNGG | 1 cut(s) | 830 |
| BssMI | GATC | 3 cut(s) | 147, 910, 949 |
| Bst2UI | CCWGG | 3 cut(s) | 136, 377, 831 |
| Bst4CI | ACNGT | 1 cut(s) | 875 |
| Bst6I | CTCTTC | 2 cut(s) | 587, 976 |
| BstAFI | CTTAAG | 1 cut(s) | 860 |
| BstAUI | TGTACA | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 1 cut(s) | 216 |
| BstDEI | CTNAG | 3 cut(s) | 30, 599, 914 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 418 |
| BstF5I | GGATG | 5 cut(s) | 84, 96, 265, 841, 913 |
| BstKTI | GATC | 3 cut(s) | 150, 913, 952 |
| BstMAI | GTCTC | 3 cut(s) | 278, 572, 589 |
| BstMBI | GATC | 3 cut(s) | 147, 910, 949 |
| BstNI | CCWGG | 3 cut(s) | 136, 377, 831 |
| BstNSI | RCATGY | 2 cut(s) | 218, 394 |
| BstSCI | CCNGG | 3 cut(s) | 134, 375, 829 |
| BstSFI | CTRYAG | 1 cut(s) | 415 |
| BstV1I | GCAGC | 3 cut(s) | 29, 795, 806 |
| BsuRI | GGCC | 1 cut(s) | 446 |
| BtsCI | GGATG | 5 cut(s) | 84, 96, 265, 841, 913 |
| BtsIMutI | CAGTG | 1 cut(s) | 880 |
| BveI | ACCTGC | 1 cut(s) | 422 |
| Cac8I | GCNNGC | 1 cut(s) | 216 |
| Csp6I | GTAC | 2 cut(s) | 42, 840 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 720, 755 |
| CviAII | CATG | 6 cut(s) | 188, 215, 391, 582, 703, 1003 |
| CviQI | GTAC | 2 cut(s) | 42, 840 |
| DdeI | CTNAG | 3 cut(s) | 30, 599, 914 |
| DpnI | GATC | 3 cut(s) | 149, 912, 951 |
| DpnII | GATC | 3 cut(s) | 147, 910, 949 |
| Eam1104I | CTCTTC | 2 cut(s) | 587, 976 |
| EarI | CTCTTC | 2 cut(s) | 587, 976 |
| EciI | GGCGGA | 1 cut(s) | 77 |
| Eco147I | AGGCCT | 1 cut(s) | 446 |
| Eco32I | GATATC | 2 cut(s) | 106, 712 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 418 |
| EcoRI | GAATTC | 1 cut(s) | 960 |
| EcoRII | CCWGG | 3 cut(s) | 134, 375, 829 |
| EcoRV | GATATC | 2 cut(s) | 106, 712 |
| FaeI | CATG | 6 cut(s) | 191, 218, 394, 585, 706, 1006 |
| FatI | CATG | 6 cut(s) | 187, 214, 390, 581, 702, 1002 |
| FauNDI | CATATG | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 3 cut(s) | 18, 809, 820 |
| FokI | GGATG | 5 cut(s) | 71, 83, 272, 848, 920 |
| Fsp4HI | GCNGC | 3 cut(s) | 18, 809, 820 |
| GluI | GCNGC | 3 cut(s) | 18, 809, 820 |
| HaeIII | GGCC | 1 cut(s) | 446 |
| HapII | CCGG | 1 cut(s) | 734 |
| Hin1II | CATG | 6 cut(s) | 191, 218, 394, 585, 706, 1006 |
| HindIII | AAGCTT | 2 cut(s) | 53, 611 |
| HinfI | GANTC | 4 cut(s) | 8, 314, 597, 721 |
| HpaII | CCGG | 1 cut(s) | 734 |
| HphI | GGTGA | 3 cut(s) | 268, 500, 959 |
| Hpy166II | GTNNAC | 3 cut(s) | 119, 160, 440 |
| Hpy188I | TCNGA | 2 cut(s) | 246, 915 |
| Hpy188III | TCNNGA | 3 cut(s) | 450, 601, 971 |
| Hpy8I | GTNNAC | 3 cut(s) | 119, 160, 440 |
| HpyAV | CCTTC | 4 cut(s) | 165, 247, 582, 737 |
| HpyCH4III | ACNGT | 1 cut(s) | 875 |
| HpyCH4IV | ACGT | 1 cut(s) | 248 |
| HpyCH4V | TGCA | 5 cut(s) | 129, 214, 218, 417, 428 |
| HpyF3I | CTNAG | 3 cut(s) | 30, 599, 914 |
| HpySE526I | ACGT | 1 cut(s) | 248 |
| Hsp92II | CATG | 6 cut(s) | 191, 218, 394, 585, 706, 1006 |
| KpnI | GGTACC | 1 cut(s) | 843 |
| Kzo9I | GATC | 3 cut(s) | 147, 910, 949 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| Lsp1109I | GCAGC | 3 cut(s) | 29, 795, 806 |
| LweI | GCATC | 1 cut(s) | 333 |
| MaeII | ACGT | 1 cut(s) | 248 |
| MaeIII | GTNAC | 3 cut(s) | 621, 685, 927 |
| MalI | GATC | 3 cut(s) | 149, 912, 951 |
| MboI | GATC | 3 cut(s) | 147, 910, 949 |
| MboII | GAAGA | 6 cut(s) | 17, 157, 604, 877, 986, 993 |
| MluCI | AATT | 7 cut(s) | 45, 220, 533, 604, 737, 803, 960 |
| MlyI | GAGTC | 1 cut(s) | 591 |
| MseI | TTAA | 2 cut(s) | 177, 861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 549 |
| MspA1I | CMGCKG | 1 cut(s) | 457 |
| MspCI | CTTAAG | 1 cut(s) | 860 |
| MspI | CCGG | 1 cut(s) | 734 |
| MspR9I | CCNGG | 3 cut(s) | 136, 377, 831 |
| MvaI | CCWGG | 3 cut(s) | 136, 377, 831 |
| NdeI | CATATG | 1 cut(s) | 289 |
| NdeII | GATC | 3 cut(s) | 147, 910, 949 |
| NlaIII | CATG | 6 cut(s) | 191, 218, 394, 585, 706, 1006 |
| NlaIV | GGNNCC | 2 cut(s) | 140, 841 |
| NmuCI | GTSAC | 2 cut(s) | 621, 927 |
| NspI | RCATGY | 2 cut(s) | 218, 394 |
| PaeI | GCATGC | 1 cut(s) | 218 |
| PceI | AGGCCT | 1 cut(s) | 446 |
| PfeI | GAWTC | 3 cut(s) | 8, 314, 721 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 836 |
| PkrI | GCNGC | 3 cut(s) | 19, 810, 821 |
| PleI | GAGTC | 1 cut(s) | 591 |
| PpsI | GAGTC | 1 cut(s) | 591 |
| Psp6I | CCWGG | 3 cut(s) | 134, 375, 829 |
| PspGI | CCWGG | 3 cut(s) | 134, 375, 829 |
| PspN4I | GGNNCC | 2 cut(s) | 140, 841 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 365, 397 |
| PstI | CTGCAG | 1 cut(s) | 419 |
| PvuII | CAGCTG | 1 cut(s) | 457 |
| RsaI | GTAC | 2 cut(s) | 43, 841 |
| RsaNI | GTAC | 2 cut(s) | 42, 840 |
| RseI | CAYNNNNRTG | 1 cut(s) | 549 |
| SaqAI | TTAA | 2 cut(s) | 177, 861 |
| SatI | GCNGC | 3 cut(s) | 18, 809, 820 |
| Sau3AI | GATC | 3 cut(s) | 147, 910, 949 |
| SbfI | CCTGCAGG | 1 cut(s) | 419 |
| SchI | GAGTC | 1 cut(s) | 591 |
| ScrFI | CCNGG | 3 cut(s) | 136, 377, 831 |
| SdaI | CCTGCAGG | 1 cut(s) | 419 |
| SfaNI | GCATC | 1 cut(s) | 333 |
| SfcI | CTRYAG | 1 cut(s) | 415 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 549 |
| SmlI | CTYRAG | 3 cut(s) | 697, 844, 860 |
| SmoI | CTYRAG | 3 cut(s) | 697, 844, 860 |
| SphI | GCATGC | 1 cut(s) | 218 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 419 |
| Sse9I | AATT | 7 cut(s) | 45, 220, 533, 604, 737, 803, 960 |
| SseBI | AGGCCT | 1 cut(s) | 446 |
| SsiI | CCGC | 2 cut(s) | 88, 925 |
| StuI | AGGCCT | 1 cut(s) | 446 |
| StyD4I | CCNGG | 3 cut(s) | 134, 375, 829 |
| TaaI | ACNGT | 1 cut(s) | 875 |
| TaiI | ACGT | 1 cut(s) | 251 |
| TaqI | TCGA | 1 cut(s) | 693 |
| TasI | AATT | 7 cut(s) | 45, 220, 533, 604, 737, 803, 960 |
| TatI | WGTACW | 1 cut(s) | 41 |
| TfiI | GAWTC | 3 cut(s) | 8, 314, 721 |
| Tru1I | TTAA | 2 cut(s) | 177, 861 |
| Tru9I | TTAA | 2 cut(s) | 177, 861 |
| TscAI | CASTG | 1 cut(s) | 880 |
| TseFI | GTSAC | 2 cut(s) | 621, 927 |
| TseI | GCWGC | 3 cut(s) | 17, 808, 819 |
| Tsp45I | GTSAC | 2 cut(s) | 621, 927 |
| TspDTI | ATGAA | 2 cut(s) | 546, 547 |
| TspRI | CASTG | 1 cut(s) | 880 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 836 |
| Vha464I | CTTAAG | 1 cut(s) | 860 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 418 |
| XapI | RAATTY | 3 cut(s) | 533, 604, 960 |
| XceI | RCATGY | 2 cut(s) | 218, 394 |