divergent subfamily of APPLE domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05570 FvH4_3g15970 FvH4_3g15970 |
| rosa_roxburghii | Rroxscaffold_2G00150330 |
| rosa_samantha | Rh2AG060700 Rh2BG059600 Rh2CG061500 Rh2DG060000 |
| rosa_wichuraiana | Rw2G004920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 769 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 120 |
| Acc36I | ACCTGC | 1 cut(s) | 769 |
| AccIII | TCCGGA | 2 cut(s) | 937, 1124 |
| AciI | CCGC | 1 cut(s) | 403 |
| AclWI | GGATC | 3 cut(s) | 416, 929, 1168 |
| AcsI | RAATTY | 1 cut(s) | 590 |
| AcuI | CTGAAG | 1 cut(s) | 531 |
| AdeI | CACNNNGTG | 1 cut(s) | 1156 |
| AfaI | GTAC | 2 cut(s) | 330, 983 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 688, 1137 |
| AflIII | ACRYGT | 1 cut(s) | 733 |
| AgsI | TTSAA | 5 cut(s) | 275, 500, 595, 679, 1097 |
| AluBI | AGCT | 3 cut(s) | 199, 467, 1174 |
| AluI | AGCT | 3 cut(s) | 199, 467, 1174 |
| Alw26I | GTCTC | 1 cut(s) | 612 |
| AlwI | GGATC | 3 cut(s) | 416, 929, 1168 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 659 |
| Aor13HI | TCCGGA | 2 cut(s) | 937, 1124 |
| AoxI | GGCC | 1 cut(s) | 448 |
| ApeKI | GCWGC | 5 cut(s) | 358, 804, 910, 1055, 1174 |
| ApoI | RAATTY | 1 cut(s) | 590 |
| AspS9I | GGNCC | 1 cut(s) | 287 |
| AsuHPI | GGTGA | 6 cut(s) | 239, 362, 793, 944, 1058, 1142 |
| AvaII | GGWCC | 1 cut(s) | 287 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 526, 559, 1065, 1098 |
| BauI | CACGAG | 1 cut(s) | 668 |
| BbvCI | CCTCAGC | 2 cut(s) | 266, 468 |
| BbvI | GCAGC | 5 cut(s) | 370, 791, 922, 1042, 1161 |
| BccI | CCATC | 4 cut(s) | 98, 721, 854, 1016 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcoDI | GTCTC | 1 cut(s) | 612 |
| BfaI | CTAG | 3 cut(s) | 312, 540, 881 |
| BfuAI | ACCTGC | 1 cut(s) | 769 |
| BglII | AGATCT | 1 cut(s) | 72 |
| BisI | GCNGC | 6 cut(s) | 359, 403, 805, 911, 1056, 1175 |
| BlsI | GCNGC | 6 cut(s) | 360, 404, 806, 912, 1057, 1176 |
| Bme18I | GGWCC | 1 cut(s) | 287 |
| BmgT120I | GGNCC | 1 cut(s) | 287 |
| BmiI | GGNNCC | 2 cut(s) | 288, 1129 |
| BmsI | GCATC | 2 cut(s) | 150, 1177 |
| BpmI | CTGGAG | 1 cut(s) | 1149 |
| Bpu10I | CCTNAGC | 4 cut(s) | 266, 468, 683, 774 |
| BsaWI | WCCGGW | 2 cut(s) | 937, 1124 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 688, 1137 |
| Bse1I | ACTGG | 1 cut(s) | 1077 |
| BseAI | TCCGGA | 2 cut(s) | 937, 1124 |
| BseGI | GGATG | 6 cut(s) | 90, 141, 700, 826, 1121, 1192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 688, 1137 |
| BseMII | CTCAG | 5 cut(s) | 280, 459, 674, 765, 1020 |
| BseNI | ACTGG | 1 cut(s) | 1077 |
| BseRI | GAGGAG | 1 cut(s) | 362 |
| BseXI | GCAGC | 5 cut(s) | 370, 791, 922, 1042, 1161 |
| BsgI | GTGCAG | 2 cut(s) | 1071, 1160 |
| BshFI | GGCC | 1 cut(s) | 450 |
| BsiSI | CCGG | 2 cut(s) | 938, 1125 |
| BslFI | GGGAC | 3 cut(s) | 199, 744, 1039 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 688, 1137 |
| BsmAI | GTCTC | 1 cut(s) | 612 |
| BsmFI | GGGAC | 3 cut(s) | 199, 744, 1039 |
| BsmI | GAATGC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 450 |
| Bsp13I | TCCGGA | 2 cut(s) | 937, 1124 |
| Bsp1407I | TGTACA | 2 cut(s) | 328, 981 |
| Bsp143I | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| BspACI | CCGC | 1 cut(s) | 403 |
| BspANI | GGCC | 1 cut(s) | 450 |
| BspCNI | CTCAG | 5 cut(s) | 279, 460, 675, 766, 1021 |
| BspEI | TCCGGA | 2 cut(s) | 937, 1124 |
| BspLI | GGNNCC | 2 cut(s) | 288, 1129 |
| BspMI | ACCTGC | 1 cut(s) | 769 |
| BspPI | GGATC | 3 cut(s) | 416, 929, 1168 |
| BsrGI | TGTACA | 2 cut(s) | 328, 981 |
| BsrI | ACTGG | 1 cut(s) | 1077 |
| BssMI | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| BssSI | CACGAG | 1 cut(s) | 668 |
| Bst2BI | CACGAG | 1 cut(s) | 668 |
| Bst4CI | ACNGT | 2 cut(s) | 241, 300 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 1098 |
| BstAUI | TGTACA | 2 cut(s) | 328, 981 |
| BstC8I | GCNNGC | 1 cut(s) | 969 |
| BstDEI | CTNAG | 6 cut(s) | 266, 468, 683, 774, 845, 1029 |
| BstF5I | GGATG | 6 cut(s) | 90, 141, 700, 826, 1121, 1192 |
| BstKTI | GATC | 8 cut(s) | 75, 100, 218, 337, 411, 937, 948, 1163 |
| BstMAI | GTCTC | 1 cut(s) | 612 |
| BstMBI | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 205, 910 |
| BstNSI | RCATGY | 1 cut(s) | 737 |
| BstV1I | GCAGC | 5 cut(s) | 370, 791, 922, 1042, 1161 |
| BstX2I | RGATCY | 2 cut(s) | 72, 1160 |
| BstYI | RGATCY | 2 cut(s) | 72, 1160 |
| BsuRI | GGCC | 1 cut(s) | 450 |
| BtsCI | GGATG | 6 cut(s) | 90, 141, 700, 826, 1121, 1192 |
| BtsI | GCAGTG | 2 cut(s) | 891, 1197 |
| BtsIMutI | CAGTG | 3 cut(s) | 891, 1084, 1197 |
| BveI | ACCTGC | 1 cut(s) | 769 |
| Cac8I | GCNNGC | 1 cut(s) | 969 |
| CaiI | CAGNNNCTG | 1 cut(s) | 659 |
| Cfr13I | GGNCC | 1 cut(s) | 287 |
| Csp6I | GTAC | 2 cut(s) | 329, 982 |
| CviAII | CATG | 7 cut(s) | 182, 209, 332, 629, 688, 734, 943 |
| CviQI | GTAC | 2 cut(s) | 329, 982 |
| DdeI | CTNAG | 6 cut(s) | 266, 468, 683, 774, 845, 1029 |
| DpnI | GATC | 8 cut(s) | 74, 99, 217, 336, 410, 936, 947, 1162 |
| DpnII | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| DraIII | CACNNNGTG | 1 cut(s) | 1156 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 120 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 120 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 1098 |
| EarI | CTCTTC | 2 cut(s) | 63, 1098 |
| Eco32I | GATATC | 1 cut(s) | 868 |
| Eco47I | GGWCC | 1 cut(s) | 287 |
| Eco57I | CTGAAG | 1 cut(s) | 531 |
| EcoO109I | RGGNCCY | 1 cut(s) | 287 |
| EcoRV | GATATC | 1 cut(s) | 868 |
| FaeI | CATG | 7 cut(s) | 185, 212, 335, 632, 691, 737, 946 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 780, 812 |
| FaqI | GGGAC | 3 cut(s) | 199, 744, 1039 |
| FatI | CATG | 7 cut(s) | 181, 208, 331, 628, 687, 733, 942 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 6 cut(s) | 359, 403, 805, 911, 1056, 1175 |
| FokI | GGATG | 6 cut(s) | 77, 128, 707, 833, 1108, 1199 |
| Fsp4HI | GCNGC | 6 cut(s) | 359, 403, 805, 911, 1056, 1175 |
| FspBI | CTAG | 3 cut(s) | 312, 540, 881 |
| GluI | GCNGC | 6 cut(s) | 359, 403, 805, 911, 1056, 1175 |
| GsuI | CTGGAG | 1 cut(s) | 1149 |
| HaeIII | GGCC | 1 cut(s) | 450 |
| HapII | CCGG | 2 cut(s) | 938, 1125 |
| Hin1II | CATG | 7 cut(s) | 185, 212, 335, 632, 691, 737, 946 |
| HindIII | AAGCTT | 1 cut(s) | 197 |
| HinfI | GANTC | 4 cut(s) | 305, 650, 656, 706 |
| HpaII | CCGG | 2 cut(s) | 938, 1125 |
| HphI | GGTGA | 6 cut(s) | 239, 362, 793, 944, 1058, 1142 |
| Hpy166II | GTNNAC | 2 cut(s) | 570, 982 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 146, 655 |
| Hpy188III | TCNNGA | 8 cut(s) | 125, 670, 938, 1002, 1097, 1111, 1125, 1166 |
| Hpy8I | GTNNAC | 2 cut(s) | 570, 982 |
| HpyAV | CCTTC | 3 cut(s) | 1028, 1177, 1201 |
| HpyCH4III | ACNGT | 2 cut(s) | 241, 300 |
| HpyCH4IV | ACGT | 2 cut(s) | 278, 1042 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 205, 910 |
| HpyF3I | CTNAG | 6 cut(s) | 266, 468, 683, 774, 845, 1029 |
| HpySE526I | ACGT | 2 cut(s) | 278, 1042 |
| Hsp92II | CATG | 7 cut(s) | 185, 212, 335, 632, 691, 737, 946 |
| Kpn2I | TCCGGA | 2 cut(s) | 937, 1124 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| Lsp1109I | GCAGC | 5 cut(s) | 370, 791, 922, 1042, 1161 |
| LweI | GCATC | 2 cut(s) | 150, 1177 |
| MaeI | CTAG | 3 cut(s) | 312, 540, 881 |
| MaeII | ACGT | 2 cut(s) | 278, 1042 |
| MaeIII | GTNAC | 4 cut(s) | 174, 235, 670, 1108 |
| MalI | GATC | 8 cut(s) | 74, 99, 217, 336, 410, 936, 947, 1162 |
| MboI | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| MfeI | CAATTG | 2 cut(s) | 716, 1059 |
| MflI | RGATCY | 2 cut(s) | 72, 1160 |
| MluCI | AATT | 8 cut(s) | 42, 440, 590, 716, 722, 1050, 1059, 1104 |
| MmeI | TCCRAC | 1 cut(s) | 282 |
| MroI | TCCGGA | 2 cut(s) | 937, 1124 |
| MseI | TTAA | 1 cut(s) | 1202 |
| MspI | CCGG | 2 cut(s) | 938, 1125 |
| MunI | CAATTG | 2 cut(s) | 716, 1059 |
| Mva1269I | GAATGC | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 205, 910 |
| NdeII | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| NlaIII | CATG | 7 cut(s) | 185, 212, 335, 632, 691, 737, 946 |
| NlaIV | GGNNCC | 2 cut(s) | 288, 1129 |
| NmuCI | GTSAC | 3 cut(s) | 174, 670, 1108 |
| NspI | RCATGY | 1 cut(s) | 737 |
| PaqCI | CACCTGC | 1 cut(s) | 769 |
| PciI | ACATGT | 1 cut(s) | 733 |
| PctI | GAATGC | 1 cut(s) | 113 |
| PfeI | GAWTC | 4 cut(s) | 305, 650, 656, 706 |
| PkrI | GCNGC | 6 cut(s) | 360, 404, 806, 912, 1057, 1176 |
| PpuMI | RGGWCCY | 1 cut(s) | 287 |
| PscI | ACATGT | 1 cut(s) | 733 |
| Psp5II | RGGWCCY | 1 cut(s) | 287 |
| PspN4I | GGNNCC | 2 cut(s) | 288, 1129 |
| PspPI | GGNCC | 1 cut(s) | 287 |
| PspPPI | RGGWCCY | 1 cut(s) | 287 |
| PstNI | CAGNNNCTG | 1 cut(s) | 659 |
| PsuI | RGATCY | 2 cut(s) | 72, 1160 |
| RsaI | GTAC | 2 cut(s) | 330, 983 |
| RsaNI | GTAC | 2 cut(s) | 329, 982 |
| SaqAI | TTAA | 1 cut(s) | 1202 |
| SatI | GCNGC | 6 cut(s) | 359, 403, 805, 911, 1056, 1175 |
| Sau3AI | GATC | 8 cut(s) | 72, 97, 215, 334, 408, 934, 945, 1160 |
| Sau96I | GGNCC | 1 cut(s) | 287 |
| SfaNI | GCATC | 2 cut(s) | 150, 1177 |
| SinI | GGWCC | 1 cut(s) | 287 |
| Sse9I | AATT | 8 cut(s) | 42, 440, 590, 716, 722, 1050, 1059, 1104 |
| SsiI | CCGC | 1 cut(s) | 403 |
| SspI | AATATT | 1 cut(s) | 342 |
| SspMI | CTAG | 3 cut(s) | 312, 540, 881 |
| TaaI | ACNGT | 2 cut(s) | 241, 300 |
| TaiI | ACGT | 2 cut(s) | 281, 1045 |
| TaqI | TCGA | 3 cut(s) | 411, 424, 814 |
| TaqII | GACCGA | 1 cut(s) | 141 |
| TasI | AATT | 8 cut(s) | 42, 440, 590, 716, 722, 1050, 1059, 1104 |
| TatI | WGTACW | 2 cut(s) | 328, 981 |
| TauI | GCSGC | 1 cut(s) | 405 |
| TfiI | GAWTC | 4 cut(s) | 305, 650, 656, 706 |
| Tru1I | TTAA | 1 cut(s) | 1202 |
| Tru9I | TTAA | 1 cut(s) | 1202 |
| TscAI | CASTG | 3 cut(s) | 891, 1084, 1197 |
| TseFI | GTSAC | 3 cut(s) | 174, 670, 1108 |
| TseI | GCWGC | 5 cut(s) | 358, 804, 910, 1055, 1174 |
| Tsp45I | GTSAC | 3 cut(s) | 174, 670, 1108 |
| TspDTI | ATGAA | 7 cut(s) | 67, 120, 270, 432, 531, 645, 837 |
| TspRI | CASTG | 3 cut(s) | 891, 1084, 1197 |
| VpaK11BI | GGWCC | 1 cut(s) | 287 |
| XapI | RAATTY | 1 cut(s) | 590 |
| XceI | RCATGY | 1 cut(s) | 737 |
| XspI | CTAG | 3 cut(s) | 312, 540, 881 |