FvH4_3g15970

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018769
Physical Location & Seq
Reverse (-)
10055301 .. 10058781
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15970.t1

Sequence Viewer

Length: 1410 bp
ATGGCTGGTGGGGATTCGGATTCTGACAGTAGCTATGTCCTTATGAGTGATGTCACTTCTGTGGGTAGTGATTCTGAGAACTATGTCATTGTGGGTAAAGACAACTGTCTGTGTGCTGATTCTGATGAAGATTTCTTTGGTGGAAGCCAAAATGAGTTGAAGAAGGTTGTCCCAAGTGCTGATTATGATGAAGATTTATTTGGTGGAAGCCAAAATGATTTGGAGAACGTTGTCGATGATGAATTTTGTGATTGCCAACAACAGTTGAAGAAGAATGGAGGTGCTGACAGTAATGGGAATGAACAACTTGGAATTCAAAGAATCTGCTGTGTGATGCCGGTGATTTTTAAATTCTTCAACCTAAGACACCTCACGGAAATGAAGCTAGTCTCGAAAGAGTGGAACATGATGGCCAAATCAGAATCGGCATCAAGGTTTGTCTCAAGCATCTTCGTTGCGAACCTTGAAGACCCGGGTCATGTTGCAGCAATTAGATTCAATGCTGAGGGCAACTTCTTTGTAGAAAAGTTCCAAGTCAATGATTTGAAATCCTTCAATTTTCCAGTTATCATTTTAGGATCTTGTCGGAGTAGAGTATGCTTAGGTGACAAGCACCACAAAATCCTCCTTGTCATTGATGTTTCTACAAAACAGTGCTGGAAGATTGAAGAAGAAGAAACTGAAGATATAGGAGAATATGGATTTGGTTATGATACAATTGATGAGGATTATAAAATCATCAAGGTTTACTCAATGGAGTTGATTCATGCTGCTATCTTTTCACAGAAGAGGGGTACTTGGAGAGACCTAACCTTTCCAGAGTTGGACATTTCCTTTGATGGGCCTGGTTGTTCCATAGAGCCTAGAATATATTGGCGTGATACATCTAAAGACTCCTTGGTAAGCTTTGATCTTTCGAAAGAGACTTTTGATACGATTGAACTTCCAAAAGCCTTGCAGAATGACAACCACATGACTTTTGGAGTTGTTCGGGAATTAACTTCTGAAGATGCAGCAGAAACTCTGTTGATTTGCATTTATGAATATGAAGATTGGGGAGAAAAGAAGTGGTCAGAGCTGTGGAAGCTTACAAAAGAACAGAAGTTTGAGAAGTTAAGAACAGTGGTCCATAATGAAGCGGTCATGAAGCCATTATGCTATCATCTGTATCCAATGACGATAGTGATACTTGAGGCAAAGCGGAAAATCAAATTGCATCATATTACCGATGACTCTCAGACAAACATACCTTGTTTTGGCAGTCTACATCATTATCCGAGAATAGATGCTATAGGCTTTTTGGACAGCCATGAATCACCAATGACAGATGATTGCATGAAGGGATCCACTTCTGAGTTACAGAACAGTGAGATTACCGAGCTCAATGGAAAAGATGGGCGGTTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

470

Amino Acids

53.37

Weight (kDa)

4.71

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 187 - 359 1.3e-11 F-box associated beta propeller domain
FBA_1 PF07734 211 - 362 2.6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05570 FvH4_3g15970 FvH4_3g15970
rosa_roxburghii Rroxscaffold_2G00150330
rosa_samantha Rh2AG060700 Rh2BG059600 Rh2CG061500 Rh2DG060000
rosa_wichuraiana Rw2G004920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AccI GTMKAC 1 cut(s) 1264
AciI CCGC 3 cut(s) 1139, 1201, 1399
AclI AACGTT 1 cut(s) 228
AclWI GGATC 3 cut(s) 586, 1338, 1351
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 3 cut(s) 242, 312, 350
AcuI CTGAAG 2 cut(s) 702, 1026
AfaI GTAC 1 cut(s) 796
AfiI CCNNNNNNNGG 2 cut(s) 840, 1256
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 6 cut(s) 120, 152, 183, 215, 687, 719
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 6 cut(s) 33, 385, 906, 1078, 1087, 1381
AluI AGCT 6 cut(s) 33, 385, 906, 1078, 1087, 1381
Alw21I GWGCWC 1 cut(s) 1383
Alw26I GTCTC 4 cut(s) 394, 445, 798, 917
AlwI GGATC 3 cut(s) 586, 1338, 1351
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 2 cut(s) 411, 842
ApeKI GCWGC 3 cut(s) 485, 770, 1013
ApoI RAATTY 3 cut(s) 242, 312, 350
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
Asp700I GAANNNNTTC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 842, 1126
AsuC2I CCSGG 2 cut(s) 473, 474
AsuHPI GGTGA 3 cut(s) 352, 617, 1308
AsuII TTCGAA 1 cut(s) 917
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 1126
BalI TGGCCA 1 cut(s) 413
BamHI GGATCC 1 cut(s) 1343
BanII GRGCYC 1 cut(s) 1383
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 1383
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 497, 757, 1025
BccI CCATC 3 cut(s) 403, 833, 1388
BciT130I CCWGG 1 cut(s) 846
BciVI GTATCC 1 cut(s) 1179
BcnI CCSGG 2 cut(s) 473, 474
BcoDI GTCTC 4 cut(s) 394, 445, 798, 917
BfaI CTAG 3 cut(s) 386, 864, 1408
BfmI CTRYAG 1 cut(s) 1290
BfuI GTATCC 1 cut(s) 1179
BisI GCNGC 3 cut(s) 486, 771, 1014
BlsI GCNGC 3 cut(s) 487, 772, 1015
Bme1390I CCNGG 3 cut(s) 473, 474, 846
Bme18I GGWCC 1 cut(s) 1126
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 842, 1126
BmiI GGNNCC 1 cut(s) 1345
BmrFI CCNGG 3 cut(s) 473, 474, 846
BmsI GCATC 6 cut(s) 324, 437, 456, 1000, 1225, 1276
BoxI GACNNNNGTC 2 cut(s) 105, 474
BpiI GAAGAC 1 cut(s) 474
Bpu10I CCTNAGC 2 cut(s) 504, 601
Bpu14I TTCGAA 1 cut(s) 917
BpuEI CTTGAG 2 cut(s) 427, 1211
BpuMI CCSGG 2 cut(s) 473, 474
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 472, 897
Bsc4I CCNNNNNNNGG 2 cut(s) 840, 1256
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 472, 897
BseLI CCNNNNNNNGG 2 cut(s) 840, 1256
BseMII CTCAG 4 cut(s) 66, 495, 1250, 1344
BseNI ACTGG 1 cut(s) 563
BseXI GCAGC 3 cut(s) 497, 757, 1025
BshFI GGCC 2 cut(s) 413, 844
BsiHKAI GWGCWC 1 cut(s) 1383
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 2 cut(s) 338, 473
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 840, 1256
BsmAI GTCTC 4 cut(s) 394, 445, 798, 917
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 413, 844
Bso31I GGTCTC 1 cut(s) 798
BsoBI CYCGRG 1 cut(s) 472
Bsp119I TTCGAA 1 cut(s) 917
Bsp1286I GDGCHC 1 cut(s) 1383
Bsp143I GATC 3 cut(s) 578, 910, 1343
BspACI CCGC 3 cut(s) 1139, 1201, 1399
BspANI GGCC 2 cut(s) 413, 844
BspCNI CTCAG 4 cut(s) 67, 496, 1249, 1345
BspHI TCATGA 1 cut(s) 1143
BspLI GGNNCC 1 cut(s) 1345
BspPI GGATC 3 cut(s) 586, 1338, 1351
BspT104I TTCGAA 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 798
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 472, 897
BssMI GATC 3 cut(s) 578, 910, 1343
BssT1I CCWWGG 1 cut(s) 897
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 7 cut(s) 29, 107, 264, 290, 654, 1123, 1367
Bst6I CTCTTC 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 917
BstDEI CTNAG 6 cut(s) 75, 362, 504, 601, 1236, 1353
BstKTI GATC 3 cut(s) 581, 913, 1346
BstMAI GTCTC 4 cut(s) 394, 445, 798, 917
BstMBI GATC 3 cut(s) 578, 910, 1343
BstMWI GCNNNNNNNGC 1 cut(s) 1084
BstNI CCWGG 1 cut(s) 846
BstPAI GACNNNNGTC 2 cut(s) 105, 474
BstSCI CCNGG 3 cut(s) 471, 472, 844
BstSFI CTRYAG 1 cut(s) 1290
BstV1I GCAGC 3 cut(s) 497, 757, 1025
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 578, 1343
BstYI RGATCY 2 cut(s) 578, 1343
BsuI GTATCC 1 cut(s) 1179
BsuRI GGCC 2 cut(s) 413, 844
BtsIMutI CAGTG 3 cut(s) 659, 1128, 1372
CciI TCATGA 1 cut(s) 1143
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 842, 1126
Cfr9I CCCGGG 1 cut(s) 472
Csp6I GTAC 1 cut(s) 795
CviAII CATG 7 cut(s) 406, 479, 767, 973, 1144, 1310, 1336
CviQI GTAC 1 cut(s) 795
DdeI CTNAG 6 cut(s) 75, 362, 504, 601, 1236, 1353
DpnI GATC 3 cut(s) 580, 912, 1345
DpnII GATC 3 cut(s) 578, 910, 1343
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Ecl136II GAGCTC 1 cut(s) 1381
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 1 cut(s) 1383
Eco31I GGTCTC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 1126
Eco53kI GAGCTC 1 cut(s) 1381
Eco57I CTGAAG 2 cut(s) 702, 1026
Eco88I CYCGRG 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 1381
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 1 cut(s) 897
EcoT38I GRGCYC 1 cut(s) 1383
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 7 cut(s) 409, 482, 770, 976, 1147, 1313, 1339
FaqI GGGAC 1 cut(s) 155
FatI CATG 7 cut(s) 405, 478, 766, 972, 1143, 1309, 1335
FblI GTMKAC 1 cut(s) 1264
Fnu4HI GCNGC 3 cut(s) 486, 771, 1014
FriOI GRGCYC 1 cut(s) 1383
Fsp4HI GCNGC 3 cut(s) 486, 771, 1014
FspBI CTAG 3 cut(s) 386, 864, 1408
GluI GCNGC 3 cut(s) 486, 771, 1014
HaeIII GGCC 2 cut(s) 413, 844
HapII CCGG 2 cut(s) 338, 473
Hin1II CATG 7 cut(s) 409, 482, 770, 976, 1147, 1313, 1339
HindIII AAGCTT 2 cut(s) 904, 1085
HpaII CCGG 2 cut(s) 338, 473
HphI GGTGA 3 cut(s) 352, 617, 1308
Hpy166II GTNNAC 2 cut(s) 748, 1265
Hpy188III TCNNGA 4 cut(s) 391, 818, 992, 1144
Hpy8I GTNNAC 2 cut(s) 748, 1265
HpyAV CCTTC 3 cut(s) 157, 562, 1333
HpyCH4III ACNGT 7 cut(s) 29, 107, 264, 290, 654, 1123, 1367
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 485, 958, 1013, 1035, 1216, 1335
HpyF10VI GCNNNNNNNGC 1 cut(s) 1084
HpyF3I CTNAG 6 cut(s) 75, 362, 504, 601, 1236, 1353
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 7 cut(s) 409, 482, 770, 976, 1147, 1313, 1339
Kzo9I GATC 3 cut(s) 578, 910, 1343
LpnPI CCDG 7 cut(s) 351, 486, 576, 643, 831, 831, 858
Lsp1109I GCAGC 3 cut(s) 497, 757, 1025
LweI GCATC 6 cut(s) 324, 437, 456, 1000, 1225, 1276
MaeI CTAG 3 cut(s) 386, 864, 1408
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 52, 605, 1356
MalI GATC 3 cut(s) 580, 912, 1345
MboI GATC 3 cut(s) 578, 910, 1343
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 2 cut(s) 578, 1343
MhlI GDGCHC 1 cut(s) 1383
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 8 cut(s) 242, 312, 350, 489, 556, 717, 995, 1211
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 887, 1226
MmeI TCCRAC 2 cut(s) 566, 804
MnlI CCTC 7 cut(s) 272, 380, 499, 635, 718, 783, 1186
Mox20I TGGCCA 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 413
MseI TTAA 3 cut(s) 348, 998, 1115
MslI CAYNNNNRTG 2 cut(s) 59, 377
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 2 cut(s) 338, 473
MspR9I CCNGG 3 cut(s) 473, 474, 846
MunI CAATTG 1 cut(s) 717
MvaI CCWGG 1 cut(s) 846
MwoI GCNNNNNNNGC 1 cut(s) 1084
NciI CCSGG 2 cut(s) 473, 474
NdeII GATC 3 cut(s) 578, 910, 1343
NlaIII CATG 7 cut(s) 409, 482, 770, 976, 1147, 1313, 1339
NlaIV GGNNCC 1 cut(s) 1345
NmuCI GTSAC 2 cut(s) 52, 605
NspV TTCGAA 1 cut(s) 917
OliI CACNNNNGTG 1 cut(s) 59
PagI TCATGA 1 cut(s) 1143
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 9 cut(s) 14, 20, 71, 119, 321, 422, 495, 763, 1313
PkrI GCNGC 3 cut(s) 487, 772, 1015
PleI GAGTC 2 cut(s) 887, 1226
PpsI GAGTC 2 cut(s) 887, 1226
PshAI GACNNNNGTC 2 cut(s) 105, 474
PsiI TTATAA 1 cut(s) 732
Psp124BI GAGCTC 1 cut(s) 1383
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 1 cut(s) 1345
PspPI GGNCC 2 cut(s) 842, 1126
PsuI RGATCY 2 cut(s) 578, 1343
RsaI GTAC 1 cut(s) 796
RsaNI GTAC 1 cut(s) 795
RseI CAYNNNNRTG 2 cut(s) 59, 377
SacI GAGCTC 1 cut(s) 1383
SaqAI TTAA 3 cut(s) 348, 998, 1115
SatI GCNGC 3 cut(s) 486, 771, 1014
Sau3AI GATC 3 cut(s) 578, 910, 1343
Sau96I GGNCC 2 cut(s) 842, 1126
SchI GAGTC 2 cut(s) 887, 1226
ScrFI CCNGG 3 cut(s) 473, 474, 846
SduI GDGCHC 1 cut(s) 1383
SfaNI GCATC 6 cut(s) 324, 437, 456, 1000, 1225, 1276
SfcI CTRYAG 1 cut(s) 1290
SfuI TTCGAA 1 cut(s) 917
SinI GGWCC 1 cut(s) 1126
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 2 cut(s) 59, 377
SmlI CTYRAG 2 cut(s) 442, 1190
SmoI CTYRAG 2 cut(s) 442, 1190
Sse9I AATT 8 cut(s) 242, 312, 350, 489, 556, 717, 995, 1211
SsiI CCGC 3 cut(s) 1139, 1201, 1399
SspMI CTAG 3 cut(s) 386, 864, 1408
SstI GAGCTC 1 cut(s) 1383
StyD4I CCNGG 3 cut(s) 471, 472, 844
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 7 cut(s) 29, 107, 264, 290, 654, 1123, 1367
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 234, 392, 917
TasI AATT 8 cut(s) 242, 312, 350, 489, 556, 717, 995, 1211
TfiI GAWTC 9 cut(s) 14, 20, 71, 119, 321, 422, 495, 763, 1313
Tru1I TTAA 3 cut(s) 348, 998, 1115
Tru9I TTAA 3 cut(s) 348, 998, 1115
TscAI CASTG 3 cut(s) 659, 1128, 1372
TseFI GTSAC 2 cut(s) 52, 605
TseI GCWGC 3 cut(s) 485, 770, 1013
Tsp45I GTSAC 2 cut(s) 52, 605
TspGWI ACGGA 1 cut(s) 389
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 3 cut(s) 659, 1128, 1372
VpaK11BI GGWCC 1 cut(s) 1126
XapI RAATTY 3 cut(s) 242, 312, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XmaI CCCGGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 1264
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 3 cut(s) 386, 864, 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.