Rh2AG060700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018769
Physical Location & Seq
Reverse (-)
4900796 .. 4901308
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG060700.1

Sequence Viewer

Length: 405 bp
ATGCTTGGTGATCCGGACATGATCTTGCTACTACAAGACAGGCGAGCAATACAAGTGTACAATGTGGTTCAGCAGTCCAGAACAGAAATATACAATGATGGGACTGAGGAAGAAGAACGTGGTGGAATTGCTGCAATTGGATTTTATGATACCACAGTGTCTGCACCTCTTCAAGAAGAAATTGTCACTATACATACATCGGGAACCGAAAAGAGGATGAACAAGCTAGTATCACCCTGTGGGATCTCCAAAGAAGCTGGTAAGGACCAGTACTTGTCATTAAGATCTTCTTTGTGGGTAATGCCTTTCTCTTATATTTGTTCACATTGGAAAGTTTACTTTTTGCTTTCAGCACAAGAAGGATGCAGTGGAGAAGTTAAAGAAGGATTGAATGTGCCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.94

Weight (kDa)

4.87

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05570 FvH4_3g15970 FvH4_3g15970
rosa_roxburghii Rroxscaffold_2G00150330
rosa_samantha Rh2AG060700 Rh2BG059600 Rh2CG061500 Rh2DG060000
rosa_wichuraiana Rw2G004920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 13
AclWI GGATC 2 cut(s) 5, 251
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 2 cut(s) 59, 272
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 173, 391
AluBI AGCT 2 cut(s) 226, 257
AluI AGCT 2 cut(s) 226, 257
AlwI GGATC 2 cut(s) 5, 251
AlwNI CAGNNNCTG 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 2 cut(s) 399, 400
AsuHPI GGTGA 2 cut(s) 20, 225
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 399
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 92
BcnI CCSGG 2 cut(s) 399, 400
BfaI CTAG 1 cut(s) 227
BglII AGATCT 1 cut(s) 284
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 2 cut(s) 399, 400
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 399, 400
BmsI GCATC 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 399, 400
BsaJI CCNNGG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 268
BseAI TCCGGA 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 2 cut(s) 222, 368
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 14, 399
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 4 cut(s) 10, 21, 243, 284
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 2 cut(s) 5, 251
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 4 cut(s) 10, 21, 243, 284
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 222, 368
BstKTI GATC 4 cut(s) 13, 24, 246, 287
BstMBI GATC 4 cut(s) 10, 21, 243, 284
BstSCI CCNGG 2 cut(s) 397, 398
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 243, 284
BstYI RGATCY 2 cut(s) 243, 284
BtsCI GGATG 2 cut(s) 222, 368
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 162, 373
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 265
Cfr9I CCCGGG 1 cut(s) 398
Csp6I GTAC 2 cut(s) 58, 271
CviAII CATG 1 cut(s) 19
CviJI RGCY 2 cut(s) 226, 257
CviKI_1 RGCY 2 cut(s) 226, 257
CviQI GTAC 2 cut(s) 58, 271
DdeI CTNAG 1 cut(s) 105
DpnI GATC 4 cut(s) 12, 23, 245, 286
DpnII GATC 4 cut(s) 10, 21, 243, 284
DraIII CACNNNGTG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 398
FaeI CATG 1 cut(s) 22
FaiI YATR 6 cut(s) 20, 91, 147, 191, 195, 315
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 229, 375
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 132
HapII CCGG 2 cut(s) 14, 399
Hin1II CATG 1 cut(s) 22
HpaII CCGG 2 cut(s) 14, 399
HphI GGTGA 2 cut(s) 20, 225
Hpy166II GTNNAC 3 cut(s) 58, 323, 337
Hpy188III TCNNGA 4 cut(s) 14, 78, 173, 201
Hpy8I GTNNAC 3 cut(s) 58, 323, 337
HpyAV CCTTC 2 cut(s) 353, 377
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 134, 164, 366
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 10, 21, 243, 284
LpnPI CCDG 6 cut(s) 25, 27, 91, 243, 250, 281
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 12, 23, 245, 286
MboI GATC 4 cut(s) 10, 21, 243, 284
MboII GAAGA 5 cut(s) 122, 125, 161, 188, 279
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 243, 284
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 3 cut(s) 126, 135, 180
MnlI CCTC 3 cut(s) 100, 177, 207
MroI TCCGGA 1 cut(s) 13
MseI TTAA 2 cut(s) 281, 378
MspI CCGG 2 cut(s) 14, 399
MspR9I CCNGG 2 cut(s) 399, 400
MunI CAATTG 1 cut(s) 135
NciI CCSGG 2 cut(s) 399, 400
NdeII GATC 4 cut(s) 10, 21, 243, 284
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 243, 284
RsaI GTAC 2 cut(s) 59, 272
RsaNI GTAC 2 cut(s) 58, 271
SaqAI TTAA 2 cut(s) 281, 378
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 4 cut(s) 10, 21, 243, 284
Sau96I GGNCC 1 cut(s) 265
ScaI AGTACT 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 399, 400
SduI GDGCHC 1 cut(s) 399
SetI ASST 4 cut(s) 121, 169, 228, 259
SfaNI GCATC 1 cut(s) 353
SinI GGWCC 1 cut(s) 265
SmaI CCCGGG 1 cut(s) 400
Sse9I AATT 3 cut(s) 126, 135, 180
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 397, 398
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 121
TasI AATT 3 cut(s) 126, 135, 180
TatI WGTACW 2 cut(s) 57, 270
Tru1I TTAA 2 cut(s) 281, 378
Tru9I TTAA 2 cut(s) 281, 378
TscAI CASTG 2 cut(s) 162, 373
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 233
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 2 cut(s) 162, 373
VpaK11BI GGWCC 1 cut(s) 265
XmaI CCCGGG 1 cut(s) 398
XspI CTAG 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.