FvH4_1g08251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018773
Physical Location & Seq
Forward (+)
4371935 .. 4372601
667 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08251.t1

Sequence Viewer

Length: 537 bp
ATGGATAGCTGCAGAAGACAACAAAGTCAAGGTGATCATGAAGCAACTTATGAATCGCAAAGGAACACAAAGCCATTGAGTTTGCCTTTCTGGGACCAGAAATTCTGTTGGACGGTTGGCAATGCTCCATGGGGAAAGCTCTTAGAGACGAAGAAGAATATGCACCTTTACAAAAACATTGTGCAATGGAACGACTCTGTAGCTCAAGACGCATTCACTGATGCAAAGAATCGGTTCCTGGATAAGGTTGACGGCCTTCCTTGCTACATAGCGTTGCCTGATTCTGATGCTTACATTGATGAAATAGATTGGAGCAACTCCAGAACTAGCATCAATCCCGAACCAGTTTCGGATCCATCGGACGAGTCTGGGGAGCATTCTGGAGATGACAATAGCAGCGTAGATAATGAAGATGATGTTGATCACAAGGAAGCAGCAGACATAGCAGGATTTGAGAACGATGCTTGGAATAAGCTGGATCACAAAATGTTGCAAGAACTGATGATGGGTTTAATGTTGGAGAGTCCATTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.34

Weight (kDa)

4.37

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08251
rosa_laevigata RLG00000016477
rosa_multiflora Rmu_sc0003819.1_g000020
rosa_roxburghii Rroxscaffold_2G00147260
rosa_rugosa Rorug02G0043200
rosa_samantha Rh2AG090800 Rh2BG090700 Rh2CG093200 Rh2DG089700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 24
AclWI GGATC 3 cut(s) 347, 360, 486
AcsI RAATTY 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 244
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 4 cut(s) 9, 139, 203, 475
AluI AGCT 4 cut(s) 9, 139, 203, 475
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 3 cut(s) 347, 360, 486
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 9, 396, 434
ApoI RAATTY 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 408, 446
BccI CCATC 2 cut(s) 364, 499
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 2 cut(s) 34, 421
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 10, 198
BisI GCNGC 3 cut(s) 10, 397, 435
BlsI GCNGC 3 cut(s) 11, 398, 436
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 3 cut(s) 95, 236, 354
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 4 cut(s) 211, 277, 339, 451
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 2 cut(s) 304, 402
BpuEI CTTGAG 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 2 cut(s) 127, 191
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 2 cut(s) 127, 191
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 408, 446
BshFI GGCC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 2 cut(s) 212, 376
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 4 cut(s) 34, 352, 421, 478
Bsp19I CCATGG 1 cut(s) 128
BspANI GGCC 1 cut(s) 255
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 95, 236, 354
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 3 cut(s) 347, 360, 486
BsrDI GCAATG 2 cut(s) 127, 191
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 4 cut(s) 34, 352, 421, 478
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 242
BstKTI GATC 4 cut(s) 37, 355, 424, 481
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 4 cut(s) 34, 352, 421, 478
BstMWI GCNNNNNNNGC 3 cut(s) 209, 261, 443
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 2 cut(s) 10, 198
BstV1I GCAGC 2 cut(s) 408, 446
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 216
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 1 cut(s) 218
CviAII CATG 2 cut(s) 38, 129
CviJI RGCY 6 cut(s) 9, 73, 139, 203, 255, 475
CviKI_1 RGCY 6 cut(s) 9, 73, 139, 203, 255, 475
DdeI CTNAG 1 cut(s) 142
DpnI GATC 4 cut(s) 36, 354, 423, 480
DpnII GATC 4 cut(s) 34, 352, 421, 478
DrdI GACNNNNNNGTC 1 cut(s) 24
DseDI GACNNNNNNGTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 41, 132
FaiI YATR 6 cut(s) 39, 51, 130, 161, 269, 443
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 37, 128
FbaI TGATCA 2 cut(s) 34, 421
Fnu4HI GCNGC 3 cut(s) 10, 397, 435
Fsp4HI GCNGC 3 cut(s) 10, 397, 435
FspBI CTAG 1 cut(s) 327
GluI GCNGC 3 cut(s) 10, 397, 435
GsuI CTGGAG 2 cut(s) 304, 402
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 41, 132
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 6 cut(s) 53, 194, 229, 281, 365, 523
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 286, 352, 361
Hpy188III TCNNGA 5 cut(s) 38, 206, 321, 338, 381
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 5 cut(s) 12, 163, 184, 224, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 261, 443
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 2 cut(s) 41, 132
Ksp22I TGATCA 2 cut(s) 34, 421
Kzo9I GATC 4 cut(s) 34, 352, 421, 478
LmnI GCTCC 3 cut(s) 130, 312, 373
Lsp1109I GCAGC 2 cut(s) 408, 446
LweI GCATC 4 cut(s) 211, 277, 339, 451
MaeI CTAG 1 cut(s) 327
MalI GATC 4 cut(s) 36, 354, 423, 480
MboI GATC 4 cut(s) 34, 352, 421, 478
MboII GAAGA 4 cut(s) 27, 163, 166, 422
MflI RGATCY 1 cut(s) 352
MluCI AATT 1 cut(s) 101
MlyI GAGTC 3 cut(s) 188, 374, 532
MmeI TCCRAC 2 cut(s) 89, 498
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 1 cut(s) 512
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 2 cut(s) 212, 376
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 209, 261, 443
NcoI CCATGG 1 cut(s) 128
NdeII GATC 4 cut(s) 34, 352, 421, 478
NlaIII CATG 2 cut(s) 41, 132
NlaIV GGNNCC 3 cut(s) 95, 236, 354
PagI TCATGA 1 cut(s) 37
PctI GAATGC 2 cut(s) 212, 376
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 3 cut(s) 53, 229, 281
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 3 cut(s) 11, 398, 436
PleI GAGTC 3 cut(s) 188, 373, 531
PpsI GAGTC 3 cut(s) 188, 373, 531
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 95, 236, 354
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 352
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 3 cut(s) 10, 397, 435
Sau3AI GATC 4 cut(s) 34, 352, 421, 478
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 3 cut(s) 188, 374, 532
ScrFI CCNGG 1 cut(s) 239
SetI ASST 7 cut(s) 11, 34, 141, 168, 205, 249, 477
SfaNI GCATC 4 cut(s) 211, 277, 339, 451
SfcI CTRYAG 2 cut(s) 10, 198
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 115
TasI AATT 1 cut(s) 101
TfiI GAWTC 3 cut(s) 53, 229, 281
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 1 cut(s) 223
TseI GCWGC 3 cut(s) 9, 396, 434
TspDTI ATGAA 4 cut(s) 54, 66, 315, 423
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 94
XagI CCTNNNNNAGG 1 cut(s) 242
XapI RAATTY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.