Rroxscaffold_2G00147260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018773
Physical Location & Seq
Reverse (-)
85164994 .. 85166754
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147260.1

Sequence Viewer

Length: 573 bp
ATGGATAGTTGGAGAAGACAACAAAATCAAGGTGATGAAGCCACTTACGAATCACAGAAGAACAGAAAGCCATTGAGTGTGCCTTTCTGGGAACAGAAATTCTGTTGGACGGTTGGCAATGTTCCGTGGGAAAATTTCTTAGAGACGAAGAAGAATATGCATCGTTACAAAGACGTTATGCAATGGAACGACTCTGCAGCTGAAGAGGCATTCAATTGTGCAAAGAAGCGGTTTCTGGATAAGATTGACGGCCTTCCCTGCAACATAGCACTGCCTGATCCTGATGCTTACATTCATAAAATAGATTGGAGCAACTCCAGAACTAGTACTGGTCCGAAACTGGTTACGGATGATAGCCAAGAAACTCGAGGCAAAGATGAAGGAGAGGTTGTTATTGATGATCTTGAGTCCCTTTCGGGTCAGTCATCTTGGGGCACTGGATGGGTGCTGGGGGCATGGGACGAGTCGGAGGAGGAATCCGAAGAAGATGCTAACAGCAGCGTAGATAATGAAGAGAATCTTGATCACAAGGAAGCAGCAGATAGCGGAGTTCGCTTTGAAATTATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.83

Weight (kDa)

4.45

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08251
rosa_laevigata RLG00000016477
rosa_multiflora Rmu_sc0003819.1_g000020
rosa_roxburghii Rroxscaffold_2G00147260
rosa_rugosa Rorug02G0043200
rosa_samantha Rh2AG090800 Rh2BG090700 Rh2CG093200 Rh2DG089700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 229, 546
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 2 cut(s) 98, 133
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 328
AgsI TTSAA 2 cut(s) 214, 560
AhlI ACTAGT 1 cut(s) 323
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 197, 498, 536
ApoI RAATTY 2 cut(s) 98, 133
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 209, 510, 548
BccI CCATC 1 cut(s) 435
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 137
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 198, 499, 537
BlsI GCNGC 3 cut(s) 199, 500, 538
BmcAI AGTACT 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 332
BmsI GCATC 3 cut(s) 169, 274, 478
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bse1I ACTGG 3 cut(s) 334, 345, 442
Bse3DI GCAATG 2 cut(s) 124, 188
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 355, 446
BseMI GCAATG 2 cut(s) 124, 188
BseNI ACTGG 3 cut(s) 334, 345, 442
BseRI GAGGAG 1 cut(s) 485
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 3 cut(s) 209, 510, 548
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 366
BslFI GGGAC 2 cut(s) 394, 473
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 394, 473
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 3 cut(s) 277, 400, 523
BspACI CCGC 2 cut(s) 229, 546
BspANI GGCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 124, 188
BsrI ACTGG 3 cut(s) 334, 345, 442
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 3 cut(s) 277, 400, 523
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 198, 507
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 355, 446
BstKTI GATC 3 cut(s) 280, 403, 526
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 277, 400, 523
BstMWI GCNNNNNNNGC 3 cut(s) 206, 258, 552
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 437
BstV1I GCAGC 3 cut(s) 209, 510, 548
BstV2I GAAGAC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 2 cut(s) 355, 446
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 435
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 456
CviJI RGCY 5 cut(s) 41, 70, 200, 252, 357
CviKI_1 RGCY 5 cut(s) 41, 70, 200, 252, 357
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 139
DpnI GATC 3 cut(s) 279, 402, 525
DpnII GATC 3 cut(s) 277, 400, 523
Eam1104I CTCTTC 2 cut(s) 198, 507
EarI CTCTTC 2 cut(s) 198, 507
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 1 cut(s) 459
FaiI YATR 6 cut(s) 158, 179, 266, 297, 457, 566
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 2 cut(s) 394, 473
FatI CATG 1 cut(s) 455
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 198, 499, 537
FokI GGATG 2 cut(s) 362, 453
Fsp4HI GCNGC 3 cut(s) 198, 499, 537
FspBI CTAG 1 cut(s) 324
GluI GCNGC 3 cut(s) 198, 499, 537
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 1 cut(s) 252
Hin1II CATG 1 cut(s) 459
HinfI GANTC 6 cut(s) 50, 191, 407, 464, 476, 517
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 336, 469, 481
Hpy188III TCNNGA 5 cut(s) 236, 281, 318, 404, 521
HpyAV CCTTC 2 cut(s) 263, 374
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 5 cut(s) 160, 181, 197, 221, 261
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 258, 552
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 277, 400, 523
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 3 cut(s) 209, 510, 548
LweI GCATC 3 cut(s) 169, 274, 478
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 164, 343
MalI GATC 3 cut(s) 279, 402, 525
MboI GATC 3 cut(s) 277, 400, 523
MboII GAAGA 8 cut(s) 27, 70, 160, 163, 215, 494, 497, 524
MfeI CAATTG 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 4 cut(s) 98, 133, 214, 561
MlyI GAGTC 3 cut(s) 185, 416, 473
MmeI TCCRAC 2 cut(s) 86, 447
MnlI CCTC 5 cut(s) 199, 362, 379, 463, 466
Mph1103I ATGCAT 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 200
MunI CAATTG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 206, 258, 552
NdeII GATC 3 cut(s) 277, 400, 523
NlaIII CATG 1 cut(s) 459
NsiI ATGCAT 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 366
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 50, 476, 517
PkrI GCNGC 3 cut(s) 199, 500, 538
PleI GAGTC 3 cut(s) 185, 415, 472
PpsI GAGTC 3 cut(s) 185, 415, 472
PspFI CCCAGC 1 cut(s) 448
PspPI GGNCC 1 cut(s) 332
PspXI VCTCGAGB 1 cut(s) 366
PstI CTGCAG 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SatI GCNGC 3 cut(s) 198, 499, 537
Sau3AI GATC 3 cut(s) 277, 400, 523
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 3 cut(s) 185, 416, 473
SduI GDGCHC 1 cut(s) 437
SetI ASST 4 cut(s) 34, 177, 202, 390
SfaNI GCATC 3 cut(s) 169, 274, 478
SfcI CTRYAG 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 366, 404
SmoI CTYRAG 2 cut(s) 366, 404
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 4 cut(s) 98, 133, 214, 561
SsiI CCGC 2 cut(s) 229, 546
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 367
TasI AATT 4 cut(s) 98, 133, 214, 561
TatI WGTACW 1 cut(s) 326
TfiI GAWTC 3 cut(s) 50, 476, 517
TscAI CASTG 2 cut(s) 276, 442
TseI GCWGC 3 cut(s) 197, 498, 536
TspDTI ATGAA 4 cut(s) 51, 284, 393, 525
TspGWI ACGGA 2 cut(s) 114, 362
TspRI CASTG 2 cut(s) 276, 442
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 2 cut(s) 98, 133
XhoI CTCGAG 1 cut(s) 366
XspI CTAG 1 cut(s) 324
ZrmI AGTACT 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.