Rh2CG093200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018773
Physical Location & Seq
Forward (+)
7643786 .. 7644626
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG093200.1

Sequence Viewer

Length: 636 bp
ATGGAAAGTTGGAGAAGACAAGAAAATCAAGGTGATGAAGCCACTTACGAATCACAGAAGAACAGAAAGCCATTGAGTGTGCCTTTCTGGGAACAGAAATTCTGTTGGACGGTTGGCAATGTTCCGTGGGAATATTTCTTAGAGACGAAGAAGAATATGCATCGTTACAAAGTCGTTATGCAATGGAACGACTCTGCAGCTGAAGAGGCATTCAATTGTGCAAAGAAGCGGTTTCTGGATAAGATTGACGGCCTTCCCTGCAACATACCACTGCCTGATCCTGATGCTTACATTCATAAAATAGATTGGAGCAGCTCCAGAACTAGTACTGGTCCGGAACTGGTTACGGATAACCAAGAAACTCGAGGCAAAGATGAAGGAGAGGTTGTTATTGATGATCTTGAGTCCCTTTCGGATCAGTCATCTTGGGGCACTGGATGGTTGCCGGGGGCATGGGACGAGTCGGAGGAGGAATCCGAAGAAGATGCTAACAGCAGAGTAGATAATGAAGAGAATCTTGATCACAAGGAAGCAGCAGATGTAGTAGGATTTGACAACAGTATTGGGAATGACCGGGATAAAAACAAAATGGTACAAGAACTGATGATGGGGTTACTTTTGGAGAGTCCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.31

Weight (kDa)

4.42

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08251
rosa_laevigata RLG00000016477
rosa_multiflora Rmu_sc0003819.1_g000020
rosa_roxburghii Rroxscaffold_2G00147260
rosa_rugosa Rorug02G0043200
rosa_samantha Rh2AG090800 Rh2BG090700 Rh2CG093200 Rh2DG089700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 272, 423
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 2 cut(s) 328, 594
AgsI TTSAA 1 cut(s) 214
AhlI ACTAGT 1 cut(s) 323
AluBI AGCT 2 cut(s) 200, 315
AluI AGCT 2 cut(s) 200, 315
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 272, 423
Ama87I CYCGRG 1 cut(s) 363
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 197, 312, 533
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 2 cut(s) 447, 575
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 209, 324, 545
BccI CCATC 2 cut(s) 432, 601
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 447, 575
BcoDI GTCTC 1 cut(s) 137
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 198, 313, 534
BlsI GCNGC 3 cut(s) 199, 314, 535
BmcAI AGTACT 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 447, 575
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 447, 575
BmsI GCATC 3 cut(s) 169, 274, 475
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 447, 575
BsaJI CCNNGG 2 cut(s) 125, 446
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bse1I ACTGG 3 cut(s) 334, 345, 439
Bse3DI GCAATG 2 cut(s) 124, 188
BseAI TCCGGA 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 125, 446
BseGI GGATG 1 cut(s) 443
BseMI GCAATG 2 cut(s) 124, 188
BseNI ACTGG 3 cut(s) 334, 345, 439
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 3 cut(s) 209, 324, 545
BshFI GGCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 335, 446, 574
BslFI GGGAC 2 cut(s) 391, 470
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 391, 470
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 434
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 4 cut(s) 277, 397, 415, 520
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 252
BspEI TCCGGA 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 272, 423
BsrDI GCAATG 2 cut(s) 124, 188
BsrI ACTGG 3 cut(s) 334, 345, 439
BssECI CCNNGG 2 cut(s) 125, 446
BssMI GATC 4 cut(s) 277, 397, 415, 520
Bst4CI ACNGT 2 cut(s) 112, 560
Bst6I CTCTTC 2 cut(s) 198, 504
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 4 cut(s) 280, 400, 418, 523
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 277, 397, 415, 520
BstMWI GCNNNNNNNGC 2 cut(s) 206, 258
BstSCI CCNGG 2 cut(s) 445, 573
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 209, 324, 545
BstV2I GAAGAC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 432
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 327, 593
CviAII CATG 1 cut(s) 453
CviJI RGCY 5 cut(s) 41, 70, 200, 252, 315
CviKI_1 RGCY 5 cut(s) 41, 70, 200, 252, 315
CviQI GTAC 2 cut(s) 327, 593
DdeI CTNAG 1 cut(s) 139
DpnI GATC 4 cut(s) 279, 399, 417, 522
DpnII GATC 4 cut(s) 277, 397, 415, 520
Eam1104I CTCTTC 2 cut(s) 198, 504
EarI CTCTTC 2 cut(s) 198, 504
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 1 cut(s) 456
FaiI YATR 5 cut(s) 158, 179, 266, 297, 454
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 2 cut(s) 391, 470
FatI CATG 1 cut(s) 452
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 3 cut(s) 198, 313, 534
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 3 cut(s) 198, 313, 534
FspBI CTAG 1 cut(s) 324
GluI GCNGC 3 cut(s) 198, 313, 534
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 1 cut(s) 252
HapII CCGG 3 cut(s) 335, 446, 574
Hin1II CATG 1 cut(s) 456
HinfI GANTC 7 cut(s) 50, 191, 404, 461, 473, 514, 625
HpaII CCGG 3 cut(s) 335, 446, 574
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 415, 466, 478
Hpy188III TCNNGA 6 cut(s) 236, 281, 318, 335, 401, 518
HpyAV CCTTC 2 cut(s) 263, 371
HpyCH4III ACNGT 2 cut(s) 112, 560
HpyCH4V TGCA 5 cut(s) 160, 181, 197, 221, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 258
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 4 cut(s) 277, 397, 415, 520
LmnI GCTCC 2 cut(s) 309, 320
Lsp1109I GCAGC 3 cut(s) 209, 324, 545
LweI GCATC 3 cut(s) 169, 274, 475
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 3 cut(s) 164, 343, 612
MalI GATC 4 cut(s) 279, 399, 417, 522
MboI GATC 4 cut(s) 277, 397, 415, 520
MboII GAAGA 8 cut(s) 27, 70, 160, 163, 215, 491, 494, 521
MfeI CAATTG 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 2 cut(s) 98, 214
MlyI GAGTC 4 cut(s) 185, 413, 470, 634
MmeI TCCRAC 2 cut(s) 86, 444
MnlI CCTC 5 cut(s) 199, 359, 376, 460, 463
Mph1103I ATGCAT 1 cut(s) 162
MroI TCCGGA 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 3 cut(s) 335, 446, 574
MspR9I CCNGG 2 cut(s) 447, 575
MunI CAATTG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 206, 258
NciI CCSGG 2 cut(s) 447, 575
NdeII GATC 4 cut(s) 277, 397, 415, 520
NlaIII CATG 1 cut(s) 456
NsiI ATGCAT 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 363
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 50, 473, 514
PkrI GCNGC 3 cut(s) 199, 314, 535
PleI GAGTC 4 cut(s) 185, 412, 469, 633
PpsI GAGTC 4 cut(s) 185, 412, 469, 633
PspPI GGNCC 1 cut(s) 332
PspXI VCTCGAGB 1 cut(s) 363
PstI CTGCAG 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 328, 594
RsaNI GTAC 2 cut(s) 327, 593
SatI GCNGC 3 cut(s) 198, 313, 534
Sau3AI GATC 4 cut(s) 277, 397, 415, 520
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 4 cut(s) 185, 413, 470, 634
ScrFI CCNGG 2 cut(s) 447, 575
SduI GDGCHC 1 cut(s) 434
SetI ASST 4 cut(s) 34, 202, 317, 387
SfaNI GCATC 3 cut(s) 169, 274, 475
SfcI CTRYAG 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 363, 401
SmoI CTYRAG 2 cut(s) 363, 401
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 2 cut(s) 98, 214
SsiI CCGC 1 cut(s) 229
SspI AATATT 1 cut(s) 134
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 445, 573
TaaI ACNGT 2 cut(s) 112, 560
TaqI TCGA 1 cut(s) 364
TasI AATT 2 cut(s) 98, 214
TatI WGTACW 1 cut(s) 326
TfiI GAWTC 3 cut(s) 50, 473, 514
TscAI CASTG 2 cut(s) 276, 439
TseI GCWGC 3 cut(s) 197, 312, 533
TspDTI ATGAA 4 cut(s) 51, 284, 390, 522
TspGWI ACGGA 2 cut(s) 114, 362
TspRI CASTG 2 cut(s) 276, 439
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 363
XspI CTAG 1 cut(s) 324
ZrmI AGTACT 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.