FvH4_1g10080
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017216
Physical Location & Seq
Reverse (-)
5481484 .. 5483409
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10080.t1

Sequence Viewer

Length: 681 bp
ATGGACCAGCTCTCATACTTACCTACTGCGCCTCCTTCTCCACCTTTCCCTTCTTCTTCTTCATCCTCCTCAGCTTTATTCAAATCGCCGCCCCAGCTTGCAGAAGATCATGGTGATGATCAGTGGACTTTCGAAGAGAACAAGAGGTTTGAGGATGCACTCGCAGAGTTTGATGATCTTGGTGCCCCGGACTTGTTAGAGACCATACATGCTAGGGTTCCGGGGAAAACTCTATGGGAGATCAAAAAACACTTTGATGATTTGGTTGAAGACATTGAGAAGATTGAGACGGGTATGATACCGATACCCAACTACAAGACTACTCCAACTGAGGTGAAATCAAATCCTCCTAGGTCTCAGCCTAGAAGGAGAGGTTTGGTATGGTCTGAAGAAGAACATAAGTTGTTCCTTCAAGGCTTGGAGAAATATGGCAAGGGGGATTGGAAGAGCATATCAAGACATTGTGTAGTGTCAAGGAACCCAACCCAAGTAGCAAGTCATGCCCAGAAGTACTTCCGTCGTCTTCAGAACTCTGCAGCATATGAGCAAGATGCTTATGGAGGAGGCCCAGACGAAAGTACTGGTTTGCAGAATCATACTGTAGGGGTCCAAATGGGGAAACGTAGGAAGTACAGAAAACGTGGGAAAGCCCAAGAACAGAGTGTGGCCCAAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

227

Amino Acids

25.58

Weight (kDa)

6.67

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 127 - 172 3e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017216)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10080
prunus_persica Prupe.7G186200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0096871
rosa_laevigata RLG00000016675
rosa_multiflora Rmu_co8382481.1_g000001 Rmu_ssc0000215.1_g000024
rosa_roxburghii Rroxscaffold_2G00145250
rosa_rugosa Rorug02G0061500
rosa_samantha Rh2AG109000 Rh2BG111100 Rh2CG113200 Rh2DG112300
rosa_wichuraiana Rw2G008440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 408, 509
AfaI GTAC 3 cut(s) 512, 580, 632
AgsI TTSAA 3 cut(s) 82, 269, 413
AluBI AGCT 3 cut(s) 10, 74, 97
AluI AGCT 3 cut(s) 10, 74, 97
Alw26I GTCTC 3 cut(s) 194, 281, 360
AoxI GGCC 2 cut(s) 565, 666
ApeKI GCWGC 1 cut(s) 536
Asp700I GAANNNNTTC 1 cut(s) 512
AspA2I CCTAGG 1 cut(s) 350
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 4 cut(s) 4, 566, 607, 667
AsuC2I CCSGG 2 cut(s) 188, 222
AsuHPI GGTGA 2 cut(s) 125, 346
AsuII TTCGAA 1 cut(s) 132
AvaII GGWCC 2 cut(s) 4, 607
AvrII CCTAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 276, 515
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 548
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 2 cut(s) 188, 222
BcoDI GTCTC 3 cut(s) 194, 281, 360
BfaI CTAG 3 cut(s) 213, 351, 363
BfmI CTRYAG 2 cut(s) 534, 600
BisI GCNGC 2 cut(s) 89, 537
BlnI CCTAGG 1 cut(s) 350
BlsI GCNGC 2 cut(s) 90, 538
BmcAI AGTACT 2 cut(s) 512, 580
Bme1390I CCNGG 2 cut(s) 188, 222
Bme18I GGWCC 2 cut(s) 4, 607
BmgT120I GGNCC 4 cut(s) 4, 566, 607, 667
BmiI GGNNCC 4 cut(s) 184, 219, 479, 608
BmrFI CCNGG 2 cut(s) 188, 222
BmsI GCATC 2 cut(s) 145, 541
BpiI GAAGAC 2 cut(s) 276, 515
Bpu10I CCTNAGC 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 132
BpuMI CCSGG 2 cut(s) 188, 222
BsaI GGTCTC 2 cut(s) 194, 360
BsaJI CCNNGG 3 cut(s) 186, 221, 350
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bse1I ACTGG 1 cut(s) 586
BseDI CCNNGG 3 cut(s) 186, 221, 350
BseGI GGATG 2 cut(s) 62, 160
BseMII CTCAG 3 cut(s) 84, 321, 371
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 2 cut(s) 58, 576
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 548
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 567, 668
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 188, 221
BsmAI GTCTC 3 cut(s) 194, 281, 360
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 567, 668
Bso31I GGTCTC 2 cut(s) 194, 360
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 4 cut(s) 106, 118, 175, 240
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 567, 668
BspCNI CTCAG 3 cut(s) 83, 322, 370
BspLI GGNNCC 4 cut(s) 184, 219, 479, 608
BspMAI CTGCAG 1 cut(s) 538
BspQI GCTCTTC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 2 cut(s) 194, 360
BsrI ACTGG 1 cut(s) 586
BssECI CCNNGG 3 cut(s) 186, 221, 350
BssMI GATC 4 cut(s) 106, 118, 175, 240
BssT1I CCWWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 2 cut(s) 129, 440
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 70, 330, 357
BstF5I GGATG 2 cut(s) 62, 160
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 109, 121, 178, 243
BstMAI GTCTC 3 cut(s) 194, 281, 360
BstMBI GATC 4 cut(s) 106, 118, 175, 240
BstMWI GCNNNNNNNGC 2 cut(s) 94, 500
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 186, 220
BstSFI CTRYAG 2 cut(s) 534, 600
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 2 cut(s) 276, 515
BsuRI GGCC 2 cut(s) 567, 668
BtsCI GGATG 2 cut(s) 62, 160
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 4 cut(s) 4, 566, 607, 667
Csp6I GTAC 3 cut(s) 511, 579, 631
CviAII CATG 3 cut(s) 110, 209, 500
CviJI RGCY 8 cut(s) 10, 74, 97, 361, 417, 567, 650, 668
CviKI_1 RGCY 8 cut(s) 10, 74, 97, 361, 417, 567, 650, 668
CviQI GTAC 3 cut(s) 511, 579, 631
DdeI CTNAG 3 cut(s) 70, 330, 357
DpnI GATC 4 cut(s) 108, 120, 177, 242
DpnII GATC 4 cut(s) 106, 118, 175, 240
Eam1104I CTCTTC 2 cut(s) 129, 440
EarI CTCTTC 2 cut(s) 129, 440
Eco130I CCWWGG 1 cut(s) 350
Eco31I GGTCTC 2 cut(s) 194, 360
Eco47I GGWCC 2 cut(s) 4, 607
Eco57I CTGAAG 2 cut(s) 408, 509
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 3 cut(s) 113, 212, 503
FatI CATG 3 cut(s) 109, 208, 499
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 89, 537
FokI GGATG 2 cut(s) 49, 167
Fsp4HI GCNGC 2 cut(s) 89, 537
FspBI CTAG 3 cut(s) 213, 351, 363
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 89, 537
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 2 cut(s) 567, 668
HapII CCGG 2 cut(s) 188, 221
HhaI GCGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 113, 212, 503
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 592
HpaII CCGG 2 cut(s) 188, 221
HphI GGTGA 2 cut(s) 125, 346
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 388, 528
Hpy188III TCNNGA 1 cut(s) 456
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 522
HpyAV CCTTC 4 cut(s) 45, 60, 360, 419
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 2 cut(s) 622, 640
HpyCH4V TGCA 4 cut(s) 101, 158, 536, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 500
HpyF3I CTNAG 3 cut(s) 70, 330, 357
HpySE526I ACGT 2 cut(s) 622, 640
Hsp92II CATG 3 cut(s) 113, 212, 503
HspAI GCGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 106, 118, 175, 240
LguI GCTCTTC 1 cut(s) 440
LpnPI CCDG 7 cut(s) 20, 107, 201, 234, 518, 567, 582
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 2 cut(s) 145, 541
MaeI CTAG 3 cut(s) 213, 351, 363
MaeII ACGT 2 cut(s) 622, 640
MalI GATC 4 cut(s) 108, 120, 177, 242
MboI GATC 4 cut(s) 106, 118, 175, 240
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 1 cut(s) 679
MslI CAYNNNNRTG 2 cut(s) 114, 255
MspI CCGG 2 cut(s) 188, 221
MspR9I CCNGG 2 cut(s) 188, 222
MwoI GCNNNNNNNGC 2 cut(s) 94, 500
NciI CCSGG 2 cut(s) 188, 222
NdeI CATATG 1 cut(s) 541
NdeII GATC 4 cut(s) 106, 118, 175, 240
NlaIII CATG 3 cut(s) 113, 212, 503
NlaIV GGNNCC 4 cut(s) 184, 219, 479, 608
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 592
PkrI GCNGC 2 cut(s) 90, 538
PspFI CCCAGC 1 cut(s) 93
PspN4I GGNNCC 4 cut(s) 184, 219, 479, 608
PspPI GGNCC 4 cut(s) 4, 566, 607, 667
PstI CTGCAG 1 cut(s) 538
RsaI GTAC 3 cut(s) 512, 580, 632
RsaNI GTAC 3 cut(s) 511, 579, 631
RseI CAYNNNNRTG 2 cut(s) 114, 255
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 2 cut(s) 89, 537
Sau3AI GATC 4 cut(s) 106, 118, 175, 240
Sau96I GGNCC 4 cut(s) 4, 566, 607, 667
ScaI AGTACT 2 cut(s) 512, 580
ScrFI CCNGG 2 cut(s) 188, 222
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 2 cut(s) 145, 541
SfcI CTRYAG 2 cut(s) 534, 600
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 2 cut(s) 4, 607
SmiMI CAYNNNNRTG 2 cut(s) 114, 255
Sse9I AATT 1 cut(s) 676
SsiI CCGC 1 cut(s) 89
SspMI CTAG 3 cut(s) 213, 351, 363
StyD4I CCNGG 2 cut(s) 186, 220
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 2 cut(s) 625, 643
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 676
TatI WGTACW 3 cut(s) 510, 578, 630
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TscAI CASTG 1 cut(s) 128
TseI GCWGC 1 cut(s) 536
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 4, 607
XceI RCATGY 1 cut(s) 212
XmaJI CCTAGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 3 cut(s) 213, 351, 363
ZrmI AGTACT 2 cut(s) 512, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.