Rmu_ssc0000215.1_g000024
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000215.1
OG0017216
Physical Location & Seq
Forward (+)
89943 .. 90610
668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000215.1_g000024.1.cds

Sequence Viewer

Length: 570 bp
atggaaccgttttcattcttccctactgctccttctccacctttcccttcttcttcttcctcagctttattggaatctacagcccagcttgcagaagacggtgatcagtggactttcgaagagaacaagaggtttgagactgcactcgcggagtttgatcttggtgccccggacctgtttgataacatacagactagggttcctgggaaaactctatgggaaatcaagaaacaccttgatgatttgtttgaagacattgagaagattgagacgggtattataccgatacccgactacaagactactccaactcaggtgaaatcaaatcctaggtctcagcctagaaagaaaggtgttatatggactgaggaagaacataagttgttccttcagggcttgaagatatatggcaagggggattggaagagcatatctagacactgtgtaatgtcaaggaacccaacacaagttgcaagtcatgcccagaagtacttccttcgtcttcagaactctgcagaatctgagcaaaatgctaatggtgaatgctccacctctaataataagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

5.45

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017216)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10080
prunus_persica Prupe.7G186200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0096871
rosa_laevigata RLG00000016675
rosa_multiflora Rmu_co8382481.1_g000001 Rmu_ssc0000215.1_g000024
rosa_roxburghii Rroxscaffold_2G00145250
rosa_rugosa Rorug02G0061500
rosa_samantha Rh2AG109000 Rh2BG111100 Rh2CG113200 Rh2DG112300
rosa_wichuraiana Rw2G008440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 374, 488
AfaI GTAC 1 cut(s) 491
AgsI TTSAA 2 cut(s) 251, 400
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 65, 88, 565
AluI AGCT 3 cut(s) 65, 88, 565
Alw26I GTCTC 3 cut(s) 131, 263, 339
AlwNI CAGNNNCTG 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
Asp700I GAANNNNTTC 1 cut(s) 491
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 3 cut(s) 113, 328, 551
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 172
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 3 cut(s) 102, 258, 494
BbvCI CCTCAGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 131, 263, 339
BfaI CTAG 4 cut(s) 195, 330, 342, 435
BfmI CTRYAG 2 cut(s) 78, 513
BlnI CCTAGG 1 cut(s) 329
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 2 cut(s) 170, 204
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 4 cut(s) 6, 166, 201, 458
BmrFI CCNGG 2 cut(s) 170, 204
BpiI GAAGAC 3 cut(s) 102, 258, 494
Bpu10I CCTNAGC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 168, 203, 329
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 168, 203, 329
BseMII CTCAG 5 cut(s) 75, 326, 350, 357, 513
BseSI GKGCMC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 131, 263, 339
BsmBI CGTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 339
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 103, 157
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 5 cut(s) 74, 325, 349, 358, 514
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 6, 166, 201, 458
BspMAI CTGCAG 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 168, 203, 329
BssMI GATC 2 cut(s) 103, 157
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 9, 101, 443
Bst6I CTCTTC 2 cut(s) 114, 419
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 5 cut(s) 61, 312, 336, 366, 522
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 106, 160
BstMAI GTCTC 3 cut(s) 131, 263, 339
BstMBI GATC 2 cut(s) 103, 157
BstMWI GCNNNNNNNGC 2 cut(s) 89, 479
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 168, 202
BstSFI CTRYAG 2 cut(s) 78, 513
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 3 cut(s) 102, 258, 494
BtsIMutI CAGTG 2 cut(s) 113, 439
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 490
CviAII CATG 1 cut(s) 479
CviJI RGCY 6 cut(s) 65, 83, 88, 340, 396, 565
CviKI_1 RGCY 6 cut(s) 65, 83, 88, 340, 396, 565
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 5 cut(s) 61, 312, 336, 366, 522
DpnI GATC 2 cut(s) 105, 159
DpnII GATC 2 cut(s) 103, 157
Eam1104I CTCTTC 2 cut(s) 114, 419
EarI CTCTTC 2 cut(s) 114, 419
Eco130I CCWWGG 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 374, 488
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 1 cut(s) 482
FatI CATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 103
FspBI CTAG 4 cut(s) 195, 330, 342, 435
GsaI CCCAGC 1 cut(s) 88
HapII CCGG 1 cut(s) 170
Hin1II CATG 1 cut(s) 482
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 2 cut(s) 74, 518
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 113, 328, 551
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 507, 523
Hpy188III TCNNGA 2 cut(s) 226, 435
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 4 cut(s) 42, 57, 398, 506
HpyCH4III ACNGT 3 cut(s) 9, 101, 443
HpyCH4V TGCA 4 cut(s) 92, 143, 473, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 479
HpyF3I CTNAG 5 cut(s) 61, 312, 336, 366, 522
Hsp92II CATG 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 157
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 2 cut(s) 34, 551
LpnPI CCDG 8 cut(s) 98, 183, 188, 189, 216, 299, 377, 497
MaeI CTAG 4 cut(s) 195, 330, 342, 435
MalI GATC 2 cut(s) 105, 159
MboI GATC 2 cut(s) 103, 157
MhlI GDGCHC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 70, 123, 361, 562
MroXI GAANNNNTTC 1 cut(s) 491
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 170, 204
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 89, 479
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 103, 157
NlaIII CATG 1 cut(s) 482
NlaIV GGNNCC 4 cut(s) 6, 166, 201, 458
NspV TTCGAA 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 419
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 74, 518
Psp6I CCWGG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 6, 166, 201, 458
PspPI GGNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 419
Sau3AI GATC 2 cut(s) 103, 157
Sau96I GGNCC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 491
ScrFI CCNGG 2 cut(s) 170, 204
SduI GDGCHC 1 cut(s) 169
SfcI CTRYAG 2 cut(s) 78, 513
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 237
SsiI CCGC 1 cut(s) 149
SspMI CTAG 4 cut(s) 195, 330, 342, 435
StyD4I CCNGG 2 cut(s) 168, 202
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 3 cut(s) 9, 101, 443
TaqI TCGA 1 cut(s) 117
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 2 cut(s) 74, 518
TscAI CASTG 2 cut(s) 113, 446
TspRI CASTG 2 cut(s) 113, 446
VpaK11BI GGWCC 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 434
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 4 cut(s) 195, 330, 342, 435
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.