Rmu_co8382481.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8382481.1
OG0017216
Physical Location & Seq
Reverse (-)
120 .. 503
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8382481.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
atggaaccgttttcattcttccctactgctccttctccacctttcccttcttcttcttcctcagctttattggaatctacagcccagcttgcagaagacggtgatcagtggactttcgaagagaacaagaggtttgagactgcactcgcggagtttgatcttggtgccccggacctgtttgataacatacagactagggttcctgggaaaactctatgggaaatcaagaaacaccttgatgatttgtttgaagacattgagaagattgagacgggtattataccgatacccgactacaagactactccaactcaggtgaaatcaaatcctaggtctcagcctagaaagaaaggtgttatatggactgaggaagaacataagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

127

Amino Acids

14.45

Weight (kDa)

4.67

Isoelectric Point (pI)

67.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017216)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10080
prunus_persica Prupe.7G186200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0096871
rosa_laevigata RLG00000016675
rosa_multiflora Rmu_co8382481.1_g000001 Rmu_ssc0000215.1_g000024
rosa_roxburghii Rroxscaffold_2G00145250
rosa_rugosa Rorug02G0061500
rosa_samantha Rh2AG109000 Rh2BG111100 Rh2CG113200 Rh2DG112300
rosa_wichuraiana Rw2G008440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 65, 88
AluI AGCT 2 cut(s) 65, 88
Alw26I GTCTC 3 cut(s) 131, 263, 339
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 113, 328
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 172
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 2 cut(s) 102, 258
BbvCI CCTCAGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 131, 263, 339
BfaI CTAG 3 cut(s) 195, 330, 342
BfmI CTRYAG 1 cut(s) 78
BlnI CCTAGG 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 170, 204
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 3 cut(s) 6, 166, 201
BmrFI CCNGG 2 cut(s) 170, 204
BpiI GAAGAC 2 cut(s) 102, 258
Bpu10I CCTNAGC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 168, 203, 329
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 168, 203, 329
BseMII CTCAG 4 cut(s) 75, 326, 350, 357
BseSI GKGCMC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 131, 263, 339
BsmBI CGTCTC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 339
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 103, 157
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 4 cut(s) 74, 325, 349, 358
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 6, 166, 201
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 168, 203, 329
BssMI GATC 2 cut(s) 103, 157
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 9, 101
Bst6I CTCTTC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 61, 312, 336, 366
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 106, 160
BstMAI GTCTC 3 cut(s) 131, 263, 339
BstMBI GATC 2 cut(s) 103, 157
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 168, 202
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 2 cut(s) 102, 258
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 172
CviJI RGCY 4 cut(s) 65, 83, 88, 340
CviKI_1 RGCY 4 cut(s) 65, 83, 88, 340
DdeI CTNAG 4 cut(s) 61, 312, 336, 366
DpnI GATC 2 cut(s) 105, 159
DpnII GATC 2 cut(s) 103, 157
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 263
FaiI YATR 6 cut(s) 188, 217, 281, 359, 361, 378
FbaI TGATCA 1 cut(s) 103
FspBI CTAG 3 cut(s) 195, 330, 342
GsaI CCCAGC 1 cut(s) 88
HapII CCGG 1 cut(s) 170
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 113, 328
Hpy166II GTNNAC 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 42, 57
HpyCH4III ACNGT 2 cut(s) 9, 101
HpyCH4V TGCA 2 cut(s) 92, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 4 cut(s) 61, 312, 336, 366
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 157
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 98, 183, 188, 189, 216, 299
MaeI CTAG 3 cut(s) 195, 330, 342
MalI GATC 2 cut(s) 105, 159
MboI GATC 2 cut(s) 103, 157
MboII GAAGA 9 cut(s) 10, 42, 45, 48, 107, 131, 263, 274, 383
MhlI GDGCHC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 3 cut(s) 70, 123, 361
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 170, 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 103, 157
NlaIV GGNNCC 3 cut(s) 6, 166, 201
NspV TTCGAA 1 cut(s) 117
PfeI GAWTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 3 cut(s) 6, 166, 201
PspPI GGNCC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 237
Sau3AI GATC 2 cut(s) 103, 157
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 170, 204
SduI GDGCHC 1 cut(s) 169
SetI ASST 9 cut(s) 43, 67, 90, 134, 177, 237, 318, 335, 355
SfcI CTRYAG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 237
SsiI CCGC 1 cut(s) 149
SspMI CTAG 3 cut(s) 195, 330, 342
StyD4I CCNGG 2 cut(s) 168, 202
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 2 cut(s) 9, 101
TaqI TCGA 1 cut(s) 117
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 113
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 172
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 3 cut(s) 195, 330, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.