RchiOBHm_Chr2g0096871
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017216
Physical Location & Seq
Reverse (-)
9597379 .. 9598047
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47176

Sequence Viewer

Length: 570 bp
ATGGAACCGTTTTCATTCTTCCCTACTGCTCCTTCTCCACCTTTCCCTTCTTCTTCTTCCTCAGCTTTATTGGAATCTACAGCCCAGCTTGCAGAAGACGGTGATCAGTGGACTTTCGAAGAGAACAAGAGGTTTGAGACTGCACTCGCGGAGTTTGATCTTGGTGCCCCGGACCTGTTTGATAACATACAGACTAGGGTTCCTGGGAAAACTCTATGGGAAATCAAGAAACACCTTGATGATTTGTTTGAAGACATTGAGAAGATTGAGACGGGTATTATACCGATACCCAACTACAAGACTACTCCAACTCAGGTGAAATCGAATCCTAGGTCTCAGCCTAGAAAGAAAGGTGTTATATGGACTGAGGAAGAACATAAGTTGTTCCTTCAGGGCTTGAAGATATATGGCAAGGGGGATTGGAAGAGCATATCTAGACACTGTGTAATGTCAAGGAACCCAACACAAGTTGCAAGTCATGCCCAGAAGTACTTCCTTCGTCTGCAGAACTCTGCAGAATCTGAGCAAAATGCTAATGGTGAATGCTCCACCTCTAATAATAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.42

Weight (kDa)

5.63

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 121 - 165 1.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017216)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10080
prunus_persica Prupe.7G186200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0096871
rosa_laevigata RLG00000016675
rosa_multiflora Rmu_co8382481.1_g000001 Rmu_ssc0000215.1_g000024
rosa_roxburghii Rroxscaffold_2G00145250
rosa_rugosa Rorug02G0061500
rosa_samantha Rh2AG109000 Rh2BG111100 Rh2CG113200 Rh2DG112300
rosa_wichuraiana Rw2G008440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 1 cut(s) 491
AgsI TTSAA 2 cut(s) 251, 400
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 65, 88, 565
AluI AGCT 3 cut(s) 65, 88, 565
Alw26I GTCTC 3 cut(s) 131, 263, 339
AlwNI CAGNNNCTG 1 cut(s) 521
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
Asp700I GAANNNNTTC 1 cut(s) 491
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 3 cut(s) 113, 328, 551
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 172
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 2 cut(s) 102, 258
BbvCI CCTCAGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 131, 263, 339
BfaI CTAG 4 cut(s) 195, 330, 342, 435
BfmI CTRYAG 3 cut(s) 78, 503, 513
BlnI CCTAGG 1 cut(s) 329
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 2 cut(s) 170, 204
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 4 cut(s) 6, 166, 201, 458
BmrFI CCNGG 2 cut(s) 170, 204
BpiI GAAGAC 2 cut(s) 102, 258
Bpu10I CCTNAGC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 168, 203, 329
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 168, 203, 329
BseMII CTCAG 5 cut(s) 75, 326, 350, 357, 513
BseSI GKGCMC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 131, 263, 339
BsmBI CGTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 339
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 103, 157
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 5 cut(s) 74, 325, 349, 358, 514
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 6, 166, 201, 458
BspMAI CTGCAG 2 cut(s) 507, 517
BspQI GCTCTTC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 168, 203, 329
BssMI GATC 2 cut(s) 103, 157
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 9, 101, 443
Bst6I CTCTTC 2 cut(s) 114, 419
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 5 cut(s) 61, 312, 336, 366, 522
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 106, 160
BstMAI GTCTC 3 cut(s) 131, 263, 339
BstMBI GATC 2 cut(s) 103, 157
BstMWI GCNNNNNNNGC 2 cut(s) 89, 479
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 168, 202
BstSFI CTRYAG 3 cut(s) 78, 503, 513
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 2 cut(s) 102, 258
BtsIMutI CAGTG 2 cut(s) 113, 439
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 490
CviAII CATG 1 cut(s) 479
CviJI RGCY 6 cut(s) 65, 83, 88, 340, 396, 565
CviKI_1 RGCY 6 cut(s) 65, 83, 88, 340, 396, 565
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 5 cut(s) 61, 312, 336, 366, 522
DpnI GATC 2 cut(s) 105, 159
DpnII GATC 2 cut(s) 103, 157
Eam1104I CTCTTC 2 cut(s) 114, 419
EarI CTCTTC 2 cut(s) 114, 419
Eco130I CCWWGG 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 1 cut(s) 482
FatI CATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 103
FspBI CTAG 4 cut(s) 195, 330, 342, 435
GsaI CCCAGC 1 cut(s) 88
HapII CCGG 1 cut(s) 170
Hin1II CATG 1 cut(s) 482
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 3 cut(s) 74, 325, 518
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 113, 328, 551
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 523
Hpy188III TCNNGA 2 cut(s) 226, 435
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 4 cut(s) 42, 57, 398, 506
HpyCH4III ACNGT 3 cut(s) 9, 101, 443
HpyCH4V TGCA 5 cut(s) 92, 143, 473, 505, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 479
HpyF3I CTNAG 5 cut(s) 61, 312, 336, 366, 522
Hsp92II CATG 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 157
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 2 cut(s) 34, 551
LpnPI CCDG 8 cut(s) 98, 183, 188, 189, 216, 299, 377, 497
MaeI CTAG 4 cut(s) 195, 330, 342, 435
MalI GATC 2 cut(s) 105, 159
MboI GATC 2 cut(s) 103, 157
MhlI GDGCHC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 70, 123, 361, 562
MroXI GAANNNNTTC 1 cut(s) 491
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 170, 204
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 89, 479
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 103, 157
NlaIII CATG 1 cut(s) 482
NlaIV GGNNCC 4 cut(s) 6, 166, 201, 458
NspV TTCGAA 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 419
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 74, 325, 518
Psp6I CCWGG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 6, 166, 201, 458
PspPI GGNCC 1 cut(s) 172
PstI CTGCAG 2 cut(s) 507, 517
PstNI CAGNNNCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 419
Sau3AI GATC 2 cut(s) 103, 157
Sau96I GGNCC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 491
ScrFI CCNGG 2 cut(s) 170, 204
SduI GDGCHC 1 cut(s) 169
SfcI CTRYAG 3 cut(s) 78, 503, 513
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 237
SsiI CCGC 1 cut(s) 149
SspMI CTAG 4 cut(s) 195, 330, 342, 435
StyD4I CCNGG 2 cut(s) 168, 202
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 3 cut(s) 9, 101, 443
TaqI TCGA 2 cut(s) 117, 323
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 3 cut(s) 74, 325, 518
TscAI CASTG 2 cut(s) 113, 446
TspRI CASTG 2 cut(s) 113, 446
VpaK11BI GGWCC 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 434
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 4 cut(s) 195, 330, 342, 435
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.