FvH4_1g13110
MYB Family

atrl6,rl6,rsm3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
7218240 .. 7219530
1291 bp
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UTR
Exon/CDS
Intron
FvH4_1g13110.t1

Sequence Viewer

Length: 246 bp
ATGGCATCCAACTCACTCTCTTCACGAAGCTCGAGCTCCTCATGGACTCCTAAGCAGAACAAACAGTTCGAAAAGGCACTAGCCTTGTACGACAAGGATACCCCTGACCGCTGGCAGAAGGTGGCCAGAGCCGTGGGAGGGAAGTCCGCGGAGGAGGTGAAGAGGCACTATGAGATTCTCATTGAGGATGTCAAGCACATTGAGTCTGGTAGAATCCCATATCCTGATTACAGGAACAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.29

Weight (kDa)

8.96

Isoelectric Point (pI)

80.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 57 2.4e-08 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 14 - 58 8.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18328
fragaria_vesca FvH4_1g13110
malus_domestica MD02G1145800.v1.1 MD15G1260000.v1.1
prunus_persica Prupe.7G156100_v2.0.a1
pyrus_communis pycom02g11530
rosa_chinensis RchiOBHm_Chr2g0101281
rosa_multiflora Rmu_sc0006314.1_g000020
rosa_roxburghii Rroxscaffold_2G00141440
rosa_rugosa Rorug02G0099400 Rorug02G0099500
rosa_samantha Rh2AG145700 Rh2BG151100 Rh2CG151500 Rh2DG151200
rosa_wichuraiana Rw2G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 109, 147, 149
AcoI YGGCCR 1 cut(s) 123
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 30, 36
AluI AGCT 2 cut(s) 30, 36
Alw21I GWGCWC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 169
AsuII TTCGAA 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 31
BalI TGGCCA 1 cut(s) 125
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 116
BciVI GTATCC 1 cut(s) 91
BfaI CTAG 1 cut(s) 80
BfuI GTATCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 31
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 132, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 132, 147
BseGI GGATG 2 cut(s) 5, 193
BseLI CCNNNNNNNGG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 28, 167
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 31
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 3 cut(s) 109, 147, 149
BspANI GGCC 1 cut(s) 125
BspFNI CGCG 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 132, 147
Bst4CI ACNGT 2 cut(s) 66, 239
Bst6I CTCTTC 2 cut(s) 25, 155
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 2 cut(s) 132, 147
BstF5I GGATG 2 cut(s) 5, 193
BstFNI CGCG 1 cut(s) 149
BstUI CGCG 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 2 cut(s) 132, 147
BtsCI GGATG 2 cut(s) 5, 193
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 113
Cfr42I CCGCGG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 42
CviJI RGCY 5 cut(s) 30, 36, 83, 125, 131
CviKI_1 RGCY 5 cut(s) 30, 36, 83, 125, 131
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 25, 155
EarI CTCTTC 2 cut(s) 25, 155
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 1 cut(s) 45
FaiI YATR 3 cut(s) 43, 171, 220
FatI CATG 1 cut(s) 41
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 1 cut(s) 80
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 1 cut(s) 45
HinfI GANTC 4 cut(s) 46, 175, 203, 213
HphI GGTGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 24, 224
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 66, 239
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 45
KspI CCGCGG 1 cut(s) 150
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 97, 117, 139, 192, 217, 237
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 2 cut(s) 12, 172
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 125
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 2 cut(s) 40, 212
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 6 cut(s) 49, 131, 145, 148, 156, 178
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 111, 149
MvnI CGCG 1 cut(s) 149
NlaIII CATG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 69
PaeR7I CTCGAG 1 cut(s) 31
PfeI GAWTC 2 cut(s) 175, 213
PleI GAGTC 2 cut(s) 40, 211
PpsI GAGTC 2 cut(s) 40, 211
Psp124BI GAGCTC 1 cut(s) 38
PspXI VCTCGAGB 1 cut(s) 31
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SacI GAGCTC 1 cut(s) 38
SacII CCGCGG 1 cut(s) 150
SchI GAGTC 2 cut(s) 40, 212
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 32, 38, 123, 159
SfaNI GCATC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SsiI CCGC 3 cut(s) 109, 147, 149
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 38
TaaI ACNGT 2 cut(s) 66, 239
TaqI TCGA 2 cut(s) 32, 69
TfiI GAWTC 2 cut(s) 175, 213
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspRI CASTG 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 31
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.