MD15G1260000.v1.1
MYB Family

atrl6,rl6,rsm3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014919
Physical Location & Seq
Forward (+)
22159703 .. 22161509
1807 bp
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UTR
Exon/CDS
Intron
MD15G1260000.v1.1.491

Sequence Viewer

Length: 249 bp
ATGATGGCATCCAACTCACTCACTTCCTCGAGAAGCTCTAGCTCCTCCTGGACTCCTAAGCAAAACAAACAGTTTGAAAAGGCCCTGGCTTTGTACGACAAGGACACCCCTGACCGCTGGCAGAAGGTTGCGAGAGCAGTCGGTGGGAAGTCTGCTGAGGAGGTGAAGAGGCACTATGAGATCCTCATTGAAGATGTCAAGCACATTGAGTCTGGCAGAGTTCCGTTTCCTGATTATAGAGGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

9.0

Isoelectric Point (pI)

81.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 59 2.5e-08 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 16 - 60 8.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18328
fragaria_vesca FvH4_1g13110
malus_domestica MD02G1145800.v1.1 MD15G1260000.v1.1
prunus_persica Prupe.7G156100_v2.0.a1
pyrus_communis pycom02g11530
rosa_chinensis RchiOBHm_Chr2g0101281
rosa_multiflora Rmu_sc0006314.1_g000020
rosa_roxburghii Rroxscaffold_2G00141440
rosa_rugosa Rorug02G0099400 Rorug02G0099500
rosa_samantha Rh2AG145700 Rh2BG151100 Rh2CG151500 Rh2DG151200
rosa_wichuraiana Rw2G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 175
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 2 cut(s) 77, 191
AjnI CCWGG 2 cut(s) 47, 84
AluBI AGCT 2 cut(s) 36, 42
AluI AGCT 2 cut(s) 36, 42
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 49, 86
BfaI CTAG 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 49, 86
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 49, 86
BmsI GCATC 1 cut(s) 17
Bpu10I CCTNAGC 2 cut(s) 57, 156
BsaJI CCNNGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 49, 86
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 34, 173
BshFI GGCC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 28
BsnI GGCC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 28
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 49, 86
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 57, 156
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstNI CCWGG 2 cut(s) 49, 86
BstSCI CCNGG 2 cut(s) 47, 84
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 4 cut(s) 36, 42, 83, 89
CviKI_1 RGCY 4 cut(s) 36, 42, 83, 89
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 57, 156
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 47, 84
FaiI YATR 2 cut(s) 177, 237
FspBI CTAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 83
HinfI GANTC 2 cut(s) 52, 209
HphI GGTGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 30, 230
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 72
HpyF3I CTNAG 2 cut(s) 57, 156
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 8 cut(s) 34, 61, 71, 98, 103, 123, 198, 243
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 39
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 178, 203
MflI RGATCY 1 cut(s) 180
MlyI GAGTC 2 cut(s) 46, 218
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 37, 55, 151, 154, 162, 194, 233
MspA1I CMGCKG 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 49, 86
MvaI CCWGG 2 cut(s) 49, 86
NdeII GATC 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 47
PleI GAGTC 2 cut(s) 46, 217
PpsI GAGTC 2 cut(s) 46, 217
Psp6I CCWGG 2 cut(s) 47, 84
PspGI CCWGG 2 cut(s) 47, 84
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 46, 218
ScrFI CCNGG 2 cut(s) 49, 86
SetI ASST 4 cut(s) 38, 44, 129, 165
SfaNI GCATC 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 47, 84
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 28
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.