MD02G1145800.v1.1
MYB Family

atrl6,rl6,rsm3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014919
Physical Location & Seq
Forward (+)
12044950 .. 12046311
1362 bp
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UTR
Exon/CDS
Intron
MD02G1145800.v1.1.491

Sequence Viewer

Length: 249 bp
ATGATGGCTTCCAACTCACTCACTTCCTCAAGAAGCTCTAGCTCCTCGTGGACTCCTAAGCAAAACAAACAGTTTGAAAAGGCCCTGGCTTTGTACGACAAGGACACCCCTGACCGCTGGCAGAAGGTTGCCAGAGCGGTCGGTGGGAAGTCTGCTGAGGAGGTGAAGCGGCACTATGAGCTCCTCATTGAGGATGTCAAGCACATTGAGTCTGGCAGAGTTCCGTTTCCTGATTATAGAGGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

9.0

Isoelectric Point (pI)

76.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 59 1.7e-08 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 16 - 62 6.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18328
fragaria_vesca FvH4_1g13110
malus_domestica MD02G1145800.v1.1 MD15G1260000.v1.1
prunus_persica Prupe.7G156100_v2.0.a1
pyrus_communis pycom02g11530
rosa_chinensis RchiOBHm_Chr2g0101281
rosa_multiflora Rmu_sc0006314.1_g000020
rosa_roxburghii Rroxscaffold_2G00141440
rosa_rugosa Rorug02G0099400 Rorug02G0099500
rosa_samantha Rh2AG145700 Rh2BG151100 Rh2CG151500 Rh2DG151200
rosa_wichuraiana Rw2G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AciI CCGC 3 cut(s) 115, 137, 169
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 3 cut(s) 36, 42, 181
AluI AGCT 3 cut(s) 36, 42, 181
Alw21I GWGCWC 1 cut(s) 183
AoxI GGCC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 175
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 86
Bpu10I CCTNAGC 2 cut(s) 57, 156
BpuEI CTTGAG 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 3 cut(s) 34, 173, 173
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 183
BspACI CCGC 3 cut(s) 115, 137, 169
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 84
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 57, 156
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 6 cut(s) 8, 36, 42, 83, 89, 181
CviKI_1 RGCY 6 cut(s) 8, 36, 42, 83, 89, 181
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 57, 156
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 183
FaiI YATR 2 cut(s) 177, 237
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 83
HinfI GANTC 2 cut(s) 52, 209
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 30, 230
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 57, 156
LmnI GCTCC 2 cut(s) 47, 186
LpnPI CCDG 7 cut(s) 71, 98, 103, 123, 145, 198, 243
MaeI CTAG 1 cut(s) 39
MbiI CCGCTC 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 183
MlyI GAGTC 2 cut(s) 46, 218
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 37, 55, 151, 154, 184, 194, 233
MspA1I CMGCKG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 46, 217
PpsI GAGTC 2 cut(s) 46, 217
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 183
SatI GCNGC 1 cut(s) 170
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 46, 218
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 183
SetI ASST 5 cut(s) 38, 44, 129, 165, 183
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SsiI CCGC 3 cut(s) 115, 137, 169
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 72
TauI GCSGC 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 188
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.