Rorug02G0099500
MYB Family

atrl6,rl6,rsm3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014919
Physical Location & Seq
Reverse (-)
8390210 .. 8391005
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0099500.1

Sequence Viewer

Length: 303 bp
ATGGTGTCTGCTCACACATCTGCCGGAAAAACTGTTGTTGCGTCATACGCGATTGCGTTGTGTTTGCGTAATAAGCAACGTGTGATATACACTGCACCCATCAAAGCTCTCAGCAACCAAAAGTACAGAGGCAAAGGACTCGGTGAGTCAACTCACCGACAACTCGGCACTGATCACAATAGACGTTTCGAGATCTGGCGACGTCCTCCTCGACGATATCGAGACACACGACGGGCGGAGGGAACGAATCCGGACCGTCCGTCGCTGCAGTGGTCGGGAGCTGATCCGCATCGTCGGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

100

Amino Acids

11.49

Weight (kDa)

11.42

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 1 - 43 1.3e-06 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18328
fragaria_vesca FvH4_1g13110
malus_domestica MD02G1145800.v1.1 MD15G1260000.v1.1
prunus_persica Prupe.7G156100_v2.0.a1
pyrus_communis pycom02g11530
rosa_chinensis RchiOBHm_Chr2g0101281
rosa_multiflora Rmu_sc0006314.1_g000020
rosa_roxburghii Rroxscaffold_2G00141440
rosa_rugosa Rorug02G0099400 Rorug02G0099500
rosa_samantha Rh2AG145700 Rh2BG151100 Rh2CG151500 Rh2DG151200
rosa_wichuraiana Rw2G011370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 205
AccII CGCG 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 2 cut(s) 236, 287
AclWI GGATC 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 79
AhdI GACNNNNNGTC 1 cut(s) 259
AluBI AGCT 2 cut(s) 107, 281
AluI AGCT 2 cut(s) 107, 281
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 253, 297
AsuHPI GGTGA 2 cut(s) 146, 155
AvaII GGWCC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 266
BglII AGATCT 1 cut(s) 192
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 253
BmeRI GACNNNNNGTC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 253, 297
BmsI GCATC 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 24, 251
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 3 cut(s) 172, 192, 283
BspACI CCGC 2 cut(s) 236, 287
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 50
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 1 cut(s) 278
BssMI GATC 3 cut(s) 172, 192, 283
BssNI GRCGYC 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 34, 257
BstACI GRCGYC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 3 cut(s) 175, 195, 286
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 3 cut(s) 172, 192, 283
BstMWI GCNNNNNNNGC 3 cut(s) 47, 73, 295
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 298
BtsI GCAGTG 2 cut(s) 90, 275
BtsIMutI CAGTG 3 cut(s) 90, 168, 275
Cfr13I GGNCC 2 cut(s) 253, 297
CpoI CGGWCCG 1 cut(s) 253
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 124
CspI CGGWCCG 1 cut(s) 253
CviJI RGCY 3 cut(s) 107, 281, 298
CviKI_1 RGCY 3 cut(s) 107, 281, 298
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 174, 194, 285
DpnII GATC 3 cut(s) 172, 192, 283
DriI GACNNNNNGTC 1 cut(s) 259
Eam1105I GACNNNNNGTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 251
Eco32I GATATC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 253
EcoRV GATATC 1 cut(s) 218
FaiI YATR 2 cut(s) 46, 88
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 298
HapII CCGG 2 cut(s) 24, 251
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 3 cut(s) 138, 146, 247
HpaII CCGG 2 cut(s) 24, 251
HphI GGTGA 2 cut(s) 146, 155
Hpy166II GTNNAC 1 cut(s) 150
Hpy188III TCNNGA 4 cut(s) 190, 221, 251, 276
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 5 cut(s) 204, 216, 234, 265, 297
HpyCH4III ACNGT 2 cut(s) 34, 257
HpyCH4IV ACGT 3 cut(s) 79, 184, 202
HpyCH4V TGCA 2 cut(s) 95, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 73, 295
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 3 cut(s) 79, 184, 202
Hsp92I GRCGYC 1 cut(s) 202
Kpn2I TCCGGA 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 172, 192, 283
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 3 cut(s) 37, 181, 264
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 298
MaeII ACGT 3 cut(s) 79, 184, 202
MalI GATC 3 cut(s) 174, 194, 285
MboI GATC 3 cut(s) 172, 192, 283
MflI RGATCY 1 cut(s) 192
MlyI GAGTC 2 cut(s) 132, 155
MnlI CCTC 4 cut(s) 122, 216, 219, 232
MroI TCCGGA 1 cut(s) 250
MspI CCGG 2 cut(s) 24, 251
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 47, 73, 295
NdeII GATC 3 cut(s) 172, 192, 283
NmeAIII GCCGAG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 3 cut(s) 208, 217, 226
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 2 cut(s) 132, 154
PpsI GAGTC 2 cut(s) 132, 154
PspPI GGNCC 2 cut(s) 253, 297
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
Rsr2I CGGWCCG 1 cut(s) 253
RsrII CGGWCCG 1 cut(s) 253
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 3 cut(s) 172, 192, 283
Sau96I GGNCC 2 cut(s) 253, 297
SchI GAGTC 2 cut(s) 132, 155
SetI ASST 5 cut(s) 82, 109, 187, 205, 283
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 1 cut(s) 253
SsiI CCGC 2 cut(s) 236, 287
TaaI ACNGT 2 cut(s) 34, 257
TaiI ACGT 3 cut(s) 82, 187, 205
TaqI TCGA 3 cut(s) 189, 211, 220
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 3 cut(s) 97, 175, 275
TseI GCWGC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 3 cut(s) 97, 175, 275
VpaK11BI GGWCC 1 cut(s) 253
ZraI GACGTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.