FvH4_1g14490

Nuclear autoantigenic sperm protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
8089611 .. 8093241
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14490.t1

Sequence Viewer

Length: 1449 bp
ATGGCGGAGGAAGCGACGGCGTCAGTGTCCGAAACCCTAGCCCAGCCAATTGCGGCGGCGAACACCAACGAGGCCACCATTGAGATCGCTACCGAGGAGGGAGGCACCGAGTCCACCTGCAACAACACCACCACCATCAATGACAAGCCCGAAGGTTCCGCCGTCACTTCTTCCTCCGACGGCGACCGCGAGAAGACGCTCGAGTTCGCCAACGAGCTCATGGAGAAGGGAAACAAGGCCATGAAGGAGGACGATTTCGGCGAGGCATCCGAGTGCTTCAGCCGCTCTCTCGAAATCAGGGTTGCACATTTTGGTGAACTTGCTCCTCAGTGTGTGAAGACATACTACAAGTATGGATGTGCATTGCTTTATAAAGCTCAGGAGGAGGCTGATCCATTGGGTAATGTACCCAAGAAAGAGGGTGAATCTCAACAGGAATCTGCTAATGCTGGAGCTGCTAAGAATGTTTTAAATGGTGAATCTTCCACAGCTTCTGTTTCAAGTAATGCTGAACAGGTTGCAAGTCCAATCCTTCAGGAAGGAGCACTGGATGATGGTGTTTCTAGTGGAAAAGACCAGGAAGAGGATAATGAAGACAGTGATGTTGAGGAACTTGCTGAAGGTGATGAAGATGAGACTGACCTTGATTTGGCATGGAAAATGCTTGATGTTGCAAGAGCAATCATTGAAAAGCAGAACTCTGGTGACACAATGGAGAAGGTGGAGGTGCTATCAGCTTTGGCAGAAGTGGCATTGGAAAGAGAGGACTTTGAAACTTCTCTCAGTGACTACCAGAATGCACTGTCCATTTTGGAGCGATTGGTTGAGCCTGACAGTCGACATATCGCTGAACTAAACTTTCGAATATGTTTGTGTCTAGAGATTGGGTCTAAGCCTGATGAAGCAATTTCATACTGCCAGAAGGCAATTTCAGTTTGTAAATCTCGTGTGCGGAGGCTCATGATTGAATCAAAGAGTTTCTCAGGATCAACAGCATCATCTTCCGCTTCTGAAGATCAGGGTGTCCAGCAGTCCTCAGATGCAACTAAGTCAGATAATGCATTGACAGATAAGCAGGCAGAGATTCAAAATCTAACTGAGCTTTGTGGCGATCTGGAAAAGAAGCTTGAAGATCTGCAACAACTGGTCACCATTCCAAGATCCATTGCTGATCTTATGGGAATGGTGTCTGCCAAGGCAAAAGCTGTTGAGAAGAGTGCATCTTCAGCAGTGGTAGGCTCTTCACAGATGGGCACTGCTGACAACAATGGAGGTTTTGATTCCCCAACCATTTCCACTGCTCATACAAATGGATCTTCTGGAGTCACACATCTTGGCGTGGTAGGTAGAGGAGTGAAGCGAACGTTGACAAACTCAGGCACGGCAGAAACAAACCCAGGGAAGAAACCTGCTATTGATCCATCAGAAAGTAACGGTGAGGGCAAATGA

Protein Analysis

483

Amino Acids

51.12

Weight (kDa)

4.39

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHNi-TPR PF10516 242 - 278 6.9e-07 SHNi-TPR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013253)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 2 cut(s) 125, 1417
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 838
AccII CGCG 1 cut(s) 189
AciI CCGC 8 cut(s) 5, 53, 56, 159, 187, 283, 952, 1005
AclI AACGTT 1 cut(s) 1364
AclWI GGATC 5 cut(s) 386, 994, 1155, 1321, 1412
AcuI CTGAAG 5 cut(s) 262, 518, 639, 1032, 1209
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 583, 649
AgsI TTSAA 6 cut(s) 501, 689, 773, 968, 1088, 1130
AjnI CCWGG 2 cut(s) 576, 1396
AluBI AGCT 8 cut(s) 217, 377, 455, 491, 737, 1102, 1126, 1205
AluI AGCT 8 cut(s) 217, 377, 455, 491, 737, 1102, 1126, 1205
Alw21I GWGCWC 2 cut(s) 219, 547
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 5 cut(s) 386, 994, 1155, 1321, 1412
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 2 cut(s) 72, 237
ApeKI GCWGC 1 cut(s) 455
AsuHPI GGTGA 7 cut(s) 326, 434, 488, 635, 716, 1141, 1448
AsuII TTCGAA 1 cut(s) 862
AvaI CYCGRG 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 1256
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 219
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BauI CACGAG 1 cut(s) 945
BbsI GAAGAC 3 cut(s) 200, 344, 600
Bbv12I GWGCWC 2 cut(s) 219, 547
BbvI GCAGC 1 cut(s) 442
BccI CCATC 4 cut(s) 143, 548, 1243, 1429
BceAI ACGGC 4 cut(s) 33, 146, 196, 1398
BciT130I CCWGG 2 cut(s) 578, 1398
BcoDI GTCTC 1 cut(s) 629
BfaI CTAG 3 cut(s) 38, 564, 878
BfuAI ACCTGC 2 cut(s) 125, 1417
BglII AGATCT 1 cut(s) 1132
BisI GCNGC 4 cut(s) 54, 57, 283, 456
BlsI GCNGC 4 cut(s) 55, 58, 284, 457
Bme1390I CCNGG 2 cut(s) 578, 1398
BmeT110I CYCGRG 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 106, 157
BmrFI CCNGG 2 cut(s) 578, 1398
BmsI GCATC 4 cut(s) 275, 1004, 1030, 1229
BpiI GAAGAC 3 cut(s) 200, 344, 600
BpmI CTGGAG 2 cut(s) 471, 1341
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 862
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 93, 1194, 1396, 1397
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 649
Bse1I ACTGG 2 cut(s) 552, 1149
Bse3DI GCAATG 2 cut(s) 362, 1164
BseBI CCWGG 2 cut(s) 578, 1398
BseDI CCNNGG 4 cut(s) 93, 1194, 1396, 1397
BseGI GGATG 3 cut(s) 266, 362, 556
BseLI CCNNNNNNNGG 2 cut(s) 583, 649
BseMI GCAATG 2 cut(s) 362, 1164
BseMII CTCAG 7 cut(s) 341, 392, 796, 996, 1050, 1089, 1389
BseNI ACTGG 2 cut(s) 552, 1149
BseRI GAGGAG 4 cut(s) 110, 315, 398, 1365
BseSI GKGCMC 1 cut(s) 1256
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 74, 239
BshNI GGYRCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 219, 547
BsiHKCI CYCGRG 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 583, 649
BsmAI GTCTC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 2 cut(s) 74, 239
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 862
Bsp1286I GDGCHC 3 cut(s) 219, 547, 1256
BspACI CCGC 8 cut(s) 5, 53, 56, 159, 187, 283, 952, 1005
BspANI GGCC 2 cut(s) 74, 239
BspCNI CTCAG 7 cut(s) 340, 391, 795, 995, 1049, 1090, 1388
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 2 cut(s) 106, 157
BspMI ACCTGC 2 cut(s) 125, 1417
BspPI GGATC 5 cut(s) 386, 994, 1155, 1321, 1412
BspQI GCTCTTC 1 cut(s) 1246
BspT104I TTCGAA 1 cut(s) 862
BspT107I GGYRCC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 2 cut(s) 362, 1164
BsrI ACTGG 2 cut(s) 552, 1149
BssECI CCNNGG 4 cut(s) 93, 1194, 1396, 1397
BssNI GRCGYC 1 cut(s) 20
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 1194
Bst2BI CACGAG 1 cut(s) 945
Bst2UI CCWGG 2 cut(s) 578, 1398
Bst4CI ACNGT 4 cut(s) 599, 804, 836, 1436
Bst6I CTCTTC 3 cut(s) 576, 1208, 1246
BstACI GRCGYC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 862
BstC8I GCNNGC 1 cut(s) 1077
BstEII GGTNACC 1 cut(s) 1147
BstF5I GGATG 3 cut(s) 266, 362, 556
BstFNI CGCG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 629
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 5 cut(s) 11, 282, 455, 749, 1226
BstNI CCWGG 2 cut(s) 578, 1398
BstPI GGTNACC 1 cut(s) 1147
BstSCI CCNGG 2 cut(s) 576, 1396
BstSLI GKGCMC 1 cut(s) 1256
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 3 cut(s) 200, 344, 600
BstX2I RGATCY 3 cut(s) 1132, 1160, 1313
BstYI RGATCY 3 cut(s) 1132, 1160, 1313
BsuRI GGCC 2 cut(s) 74, 239
BtsCI GGATG 3 cut(s) 266, 362, 556
BtsI GCAGTG 3 cut(s) 1236, 1254, 1296
BtsIMutI CAGTG 9 cut(s) 30, 335, 545, 604, 790, 800, 1236, 1254, 1296
BveI ACCTGC 2 cut(s) 125, 1417
Cac8I GCNNGC 1 cut(s) 1077
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 960
CseI GACGC 2 cut(s) 9, 205
Csp6I GTAC 1 cut(s) 407
CviAII CATG 4 cut(s) 220, 241, 654, 961
CviQI GTAC 1 cut(s) 407
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 3 cut(s) 576, 1208, 1246
EarI CTCTTC 3 cut(s) 576, 1208, 1246
EciI GGCGGA 2 cut(s) 20, 148
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 1194
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 5 cut(s) 262, 518, 639, 1032, 1209
Eco88I CYCGRG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 1147
EcoICRI GAGCTC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 1147
EcoRII CCWGG 2 cut(s) 576, 1396
EcoT14I CCWWGG 1 cut(s) 1194
EcoT22I ATGCAT 1 cut(s) 1063
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 1194
FaeI CATG 4 cut(s) 223, 244, 657, 964
FatI CATG 4 cut(s) 219, 240, 653, 960
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 54, 57, 283, 456
FokI GGATG 3 cut(s) 253, 369, 563
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 4 cut(s) 54, 57, 283, 456
FspBI CTAG 3 cut(s) 38, 564, 878
GluI GCNGC 4 cut(s) 54, 57, 283, 456
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 2 cut(s) 471, 1341
HaeIII GGCC 2 cut(s) 74, 239
HgaI GACGC 2 cut(s) 9, 205
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 4 cut(s) 223, 244, 657, 964
HincII GTYRAC 2 cut(s) 839, 1368
HindII GTYRAC 2 cut(s) 839, 1368
HindIII AAGCTT 1 cut(s) 1124
HinfI GANTC 8 cut(s) 110, 425, 437, 479, 968, 1084, 1280, 1323
HphI GGTGA 7 cut(s) 326, 434, 488, 635, 716, 1141, 1448
Hpy166II GTNNAC 4 cut(s) 114, 317, 839, 1368
Hpy188I TCNGA 7 cut(s) 31, 178, 271, 1012, 1039, 1054, 1426
Hpy188III TCNNGA 8 cut(s) 290, 380, 536, 878, 961, 984, 1115, 1320
Hpy8I GTNNAC 4 cut(s) 114, 317, 839, 1368
Hpy99I CGWCG 2 cut(s) 19, 182
HpyAV CCTTC 8 cut(s) 146, 220, 238, 533, 542, 614, 712, 916
HpyCH4III ACNGT 4 cut(s) 599, 804, 836, 1436
HpyCH4IV ACGT 1 cut(s) 1364
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 282, 455, 749, 1226
HpySE526I ACGT 1 cut(s) 1364
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 4 cut(s) 223, 244, 657, 964
LguI GCTCTTC 1 cut(s) 1246
LmnI GCTCC 4 cut(s) 328, 452, 542, 814
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 4 cut(s) 275, 1004, 1030, 1229
MaeI CTAG 3 cut(s) 38, 564, 878
MaeII ACGT 1 cut(s) 1364
MaeIII GTNAC 6 cut(s) 163, 704, 785, 1147, 1324, 1430
MbiI CCGCTC 1 cut(s) 285
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 3 cut(s) 1132, 1160, 1313
MhlI GDGCHC 3 cut(s) 219, 547, 1256
MluCI AATT 3 cut(s) 48, 906, 927
MlyI GAGTC 2 cut(s) 119, 1332
MmeI TCCRAC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 1063
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 3 cut(s) 271, 312, 1308
MspR9I CCNGG 2 cut(s) 578, 1398
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 2 cut(s) 578, 1398
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 11, 282, 455, 749, 1226
NlaIII CATG 4 cut(s) 223, 244, 657, 964
NlaIV GGNNCC 2 cut(s) 106, 157
NmuCI GTSAC 5 cut(s) 163, 704, 785, 1147, 1324
NsiI ATGCAT 1 cut(s) 1063
NspV TTCGAA 1 cut(s) 862
PaeR7I CTCGAG 1 cut(s) 200
PagI TCATGA 1 cut(s) 960
PaqCI CACCTGC 1 cut(s) 125
PasI CCCWGGG 1 cut(s) 1397
PciSI GCTCTTC 1 cut(s) 1246
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 258
PctI GAATGC 1 cut(s) 802
PfeI GAWTC 6 cut(s) 425, 437, 479, 968, 1084, 1280
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 4 cut(s) 55, 58, 284, 457
PleI GAGTC 2 cut(s) 118, 1331
PpsI GAGTC 2 cut(s) 118, 1331
PsiI TTATAA 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 1364
Psp6I CCWGG 2 cut(s) 576, 1396
PspEI GGTNACC 1 cut(s) 1147
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 576, 1396
PspN4I GGNNCC 2 cut(s) 106, 157
PspXI VCTCGAGB 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 3 cut(s) 1132, 1160, 1313
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 3 cut(s) 271, 312, 1308
SacI GAGCTC 1 cut(s) 219
SalI GTCGAC 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 1246
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 4 cut(s) 54, 57, 283, 456
SchI GAGTC 2 cut(s) 119, 1332
ScrFI CCNGG 2 cut(s) 578, 1398
SduI GDGCHC 3 cut(s) 219, 547, 1256
SfaNI GCATC 4 cut(s) 275, 1004, 1030, 1229
Sfr274I CTCGAG 1 cut(s) 200
SfuI TTCGAA 1 cut(s) 862
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 271, 312, 1308
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 48, 906, 927
SsiI CCGC 8 cut(s) 5, 53, 56, 159, 187, 283, 952, 1005
SspMI CTAG 3 cut(s) 38, 564, 878
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 576, 1396
StyI CCWWGG 1 cut(s) 1194
TaaI ACNGT 4 cut(s) 599, 804, 836, 1436
TaiI ACGT 1 cut(s) 1367
TaqI TCGA 4 cut(s) 201, 291, 838, 862
TasI AATT 3 cut(s) 48, 906, 927
TauI GCSGC 3 cut(s) 56, 59, 285
TfiI GAWTC 6 cut(s) 425, 437, 479, 968, 1084, 1280
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 9 cut(s) 30, 335, 552, 604, 790, 807, 1236, 1261, 1303
TseFI GTSAC 5 cut(s) 163, 704, 785, 1147, 1324
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 5 cut(s) 163, 704, 785, 1147, 1324
TspDTI ATGAA 5 cut(s) 257, 606, 642, 900, 915
TspRI CASTG 9 cut(s) 30, 335, 552, 604, 790, 807, 1236, 1261, 1303
Tth111I GACNNNGTC 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 3 cut(s) 38, 564, 878
Zsp2I ATGCAT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.