Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013253

Physical Location & Seq

Genomic Coordinates Reverse (-)

15057218 .. 15060925

Gene Structure 3708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATTTTTTCTTTTTTCTTATTACAAAACTCAGTTAAGACATGGAGAACGATTTCATTCAAAAGACCAAATGTTTTAAGTAACAACAGTTATAATTGTTTTATTTGTTTGCATAACTGTTTGTCACTTCCTTTTGAGGCAGTTTCTAGCGAAAAAGACCAGGAAGAAGATAATGAAGGTAGTGATGTTGAGGACCTTGCTGAAGGTGATGAGGATGAGACTGACCTTGATTTGGCGTGGAAAATGCTTGATGTTGCAAGAGCAATCATTGAAAAGCATAACTCTGGTGATACAATGGAGACGGTGGAGGTGCTATCAGCTTTGGCAGAAGTGGCATTGGAAAGAGAGGACTTTGAAACTTCTCTCAGTGATTACCAGAATGCACTGTCCTGTTTGGAGCGGTTGGTTGAGCCTGACAGTCGACATATAGCTGAACTAAATTTTCGAATATGTTTGTGTCTGGAGATTGGGTCTAAGCCTGATGAAGCGATTCCATACTGCCAGAAGGCTATTTCAGTTTGTAAGTCTCGTGTGCAGAGGCTCATGATTGAATCCAAGAGTTTCTCAGGATCAACAGCATCATCGGCTGCTTCTGAAGATCAAGGTGTCCAGCAGTCCTCAGATGTAATTAAGTCTAATAATGCCGTGACAGATAAGCAGACAGAGATTGAAACTCTAACTGAGCTTTGTGGCGATCTGGAAAAGAAGCTTGAAGATTTGCAACAACTGGTCTCGAACCCAAGATCCATTCTAGGTGAACTTCTGGGAATGATGTCTGCCAAGGCAAAAGCTGGTGAGAAGAGTGCATCTTCAGCAGCGGTGGGTTCTTCACAGATGGGCACTGGTAACAACAATGGAGGTTTTGATTCCCCAACCATTTCCACTGCTCATACAAATGGATCTTCTGGAGTCACACATCTTGGCGTGGTAGGAAGAGGAGTGAAGCGAACGTTGACAAACTCAGGCACGGCAGAATCAAACCCAGGGAAGAAACCTGCTTTGAATTCATCAGAGGGTAACGGTGAGGGCAAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0001701 GO:0001824 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006335 GO:0006336 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034723 GO:0034724 GO:0034728 GO:0042393 GO:0043009 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0044877 GO:0046483 GO:0048856 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHNi-TPR

Protein Analysis

346

Amino Acids

37.28

Weight (kDa)

4.65

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37210 AT4G37210
fragaria_vesca	FvH4_1g14490
malus_domestica	MD02G1158400.v1.1 MD15G1273200.v1.1
prunus_persica	Prupe.7G145400_v2.0.a1
pyrus_communis	pycom02g12490 pycom15g23640
rosa_chinensis	RchiOBHm_Chr2g0103241
rosa_laevigata	RLG00000017217
rosa_multiflora	Rmu_ssc0000232.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139830
rosa_rugosa	Rorug02G0112700
rosa_samantha	Rh2AG161400 Rh2BG168200 Rh2CG168300 Rh2DG167100
rosa_wichuraiana	Rw2G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	1003
AccBSI	CCGCTC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	2 cut(s)	400, 818
AclI	AACGTT	1 cut(s)	950
AclWI	GGATC	3 cut(s)	577, 738, 907
AcsI	RAATTY	2 cut(s)	439, 1003
AcuI	CTGAAG	3 cut(s)	222, 615, 795
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	7 cut(s)	61, 272, 356, 551, 671, 713, 1003
AjnI	CCWGG	2 cut(s)	159, 982
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	5 cut(s)	320, 431, 685, 709, 791
AluI	AGCT	5 cut(s)	320, 431, 685, 709, 791
Alw26I	GTCTC	4 cut(s)	212, 293, 531, 736
AlwI	GGATC	3 cut(s)	577, 738, 907
ApeKI	GCWGC	2 cut(s)	587, 815
ApoI	RAATTY	2 cut(s)	439, 1003
Asp700I	GAANNNNTTC	2 cut(s)	52, 489
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	5 cut(s)	218, 299, 767, 806, 1034
AsuII	TTCGAA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	842
BauI	CACGAG	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	574, 827
BccI	CCATC	1 cut(s)	829
BceAI	ACGGC	2 cut(s)	629, 984
BciT130I	CCWGG	2 cut(s)	161, 984
BcoDI	GTCTC	4 cut(s)	212, 293, 531, 736
BfaI	CTAG	2 cut(s)	147, 752
BfuAI	ACCTGC	1 cut(s)	1003
BisI	GCNGC	2 cut(s)	588, 816
BlsI	GCNGC	2 cut(s)	589, 817
Bme1390I	CCNGG	2 cut(s)	161, 984
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	161, 984
BmsI	GCATC	2 cut(s)	587, 815
BpmI	CTGGAG	2 cut(s)	482, 927
Bpu14I	TTCGAA	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	736
BsaJI	CCNNGG	3 cut(s)	780, 982, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	732, 847
BseBI	CCWGG	2 cut(s)	161, 984
BseDI	CCNNGG	3 cut(s)	780, 982, 983
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	6 cut(s)	45, 379, 579, 633, 672, 975
BseNI	ACTGG	2 cut(s)	732, 847
BseRI	GAGGAG	1 cut(s)	951
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	2 cut(s)	574, 827
BsgI	GTGCAG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	4 cut(s)	212, 293, 531, 736
BsmBI	CGTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	736
Bsp119I	TTCGAA	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp143I	GATC	5 cut(s)	569, 598, 694, 743, 899
BspACI	CCGC	2 cut(s)	400, 818
BspCNI	CTCAG	6 cut(s)	44, 378, 578, 632, 673, 974
BspHI	TCATGA	2 cut(s)	543, 1037
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	3 cut(s)	577, 738, 907
BspT104I	TTCGAA	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	732, 847
BssECI	CCNNGG	3 cut(s)	780, 982, 983
BssMI	GATC	5 cut(s)	569, 598, 694, 743, 899
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	161, 984
Bst4CI	ACNGT	6 cut(s)	89, 119, 304, 387, 419, 1022
Bst6I	CTCTTC	2 cut(s)	794, 928
BstBI	TTCGAA	1 cut(s)	445
BstDEI	CTNAG	7 cut(s)	31, 365, 474, 565, 619, 681, 961
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	5 cut(s)	572, 601, 697, 746, 902
BstMAI	GTCTC	4 cut(s)	212, 293, 531, 736
BstMBI	GATC	5 cut(s)	569, 598, 694, 743, 899
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 584, 812
BstNI	CCWGG	2 cut(s)	161, 984
BstSCI	CCNGG	2 cut(s)	159, 982
BstSLI	GKGCMC	1 cut(s)	842
BstV1I	GCAGC	2 cut(s)	574, 827
BstX2I	RGATCY	2 cut(s)	743, 899
BstYI	RGATCY	2 cut(s)	743, 899
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	4 cut(s)	373, 383, 840, 882
BveI	ACCTGC	1 cut(s)	1003
CciI	TCATGA	2 cut(s)	543, 1037
Cfr13I	GGNCC	1 cut(s)	193
CviAII	CATG	3 cut(s)	42, 544, 1038
DdeI	CTNAG	7 cut(s)	31, 365, 474, 565, 619, 681, 961
DpnI	GATC	5 cut(s)	571, 600, 696, 745, 901
DpnII	GATC	5 cut(s)	569, 598, 694, 743, 899
Eam1104I	CTCTTC	2 cut(s)	794, 928
EarI	CTCTTC	2 cut(s)	794, 928
Eco130I	CCWWGG	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	222, 615, 795
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	159, 982
EcoT14I	CCWWGG	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	780
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	3 cut(s)	45, 547, 1041
FatI	CATG	3 cut(s)	41, 543, 1037
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	588, 816
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	588, 816
FspBI	CTAG	2 cut(s)	147, 752
GluI	GCNGC	2 cut(s)	588, 816
GsuI	CTGGAG	2 cut(s)	482, 927
Hin1II	CATG	3 cut(s)	45, 547, 1041
HincII	GTYRAC	2 cut(s)	422, 954
HindII	GTYRAC	2 cut(s)	422, 954
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	6 cut(s)	490, 551, 866, 909, 974, 1034
HphI	GGTGA	5 cut(s)	218, 299, 767, 806, 1034
Hpy166II	GTNNAC	3 cut(s)	422, 758, 954
Hpy188I	TCNGA	3 cut(s)	595, 622, 1012
Hpy188III	TCNNGA	7 cut(s)	461, 544, 567, 698, 733, 906, 1038
Hpy8I	GTNNAC	3 cut(s)	422, 758, 954
HpyAV	CCTTC	3 cut(s)	170, 197, 499
HpyCH4III	ACNGT	6 cut(s)	89, 119, 304, 387, 419, 1022
HpyCH4IV	ACGT	1 cut(s)	950
HpyCH4V	TGCA	6 cut(s)	112, 257, 383, 535, 721, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 584, 812
HpyF3I	CTNAG	7 cut(s)	31, 365, 474, 565, 619, 681, 961
HpySE526I	ACGT	1 cut(s)	950
Hsp92II	CATG	3 cut(s)	45, 547, 1041
Kzo9I	GATC	5 cut(s)	569, 598, 694, 743, 899
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	2 cut(s)	574, 827
LweI	GCATC	2 cut(s)	587, 815
MaeI	CTAG	2 cut(s)	147, 752
MaeII	ACGT	1 cut(s)	950
MaeIII	GTNAC	6 cut(s)	80, 123, 646, 845, 910, 1016
MalI	GATC	5 cut(s)	571, 600, 696, 745, 901
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	5 cut(s)	569, 598, 694, 743, 899
MflI	RGATCY	2 cut(s)	743, 899
MhlI	GDGCHC	1 cut(s)	842
MluCI	AATT	4 cut(s)	94, 439, 627, 1003
MlyI	GAGTC	1 cut(s)	918
MroXI	GAANNNNTTC	2 cut(s)	52, 489
MseI	TTAA	3 cut(s)	36, 77, 630
MslI	CAYNNNNRTG	1 cut(s)	894
MspA1I	CMGCKG	1 cut(s)	818
MspR9I	CCNGG	2 cut(s)	161, 984
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	161, 984
MwoI	GCNNNNNNNGC	3 cut(s)	332, 584, 812
NdeII	GATC	5 cut(s)	569, 598, 694, 743, 899
NlaIII	CATG	3 cut(s)	45, 547, 1041
NmuCI	GTSAC	3 cut(s)	123, 646, 910
NspV	TTCGAA	1 cut(s)	445
PagI	TCATGA	2 cut(s)	543, 1037
PasI	CCCWGGG	1 cut(s)	983
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	2 cut(s)	52, 489
PfeI	GAWTC	5 cut(s)	490, 551, 866, 974, 1034
PkrI	GCNGC	2 cut(s)	589, 817
PleI	GAGTC	1 cut(s)	917
PpsI	GAGTC	1 cut(s)	917
PpuMI	RGGWCCY	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	950
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	159, 982
PspGI	CCWGG	2 cut(s)	159, 982
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	743, 899
RseI	CAYNNNNRTG	1 cut(s)	894
SalI	GTCGAC	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	36, 77, 630
SatI	GCNGC	2 cut(s)	588, 816
Sau3AI	GATC	5 cut(s)	569, 598, 694, 743, 899
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	918
ScrFI	CCNGG	2 cut(s)	161, 984
SduI	GDGCHC	1 cut(s)	842
SfaNI	GCATC	2 cut(s)	587, 815
SfuI	TTCGAA	1 cut(s)	445
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	894
Sse9I	AATT	4 cut(s)	94, 439, 627, 1003
SsiI	CCGC	2 cut(s)	400, 818
SspMI	CTAG	2 cut(s)	147, 752
StyD4I	CCNGG	2 cut(s)	159, 982
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	6 cut(s)	89, 119, 304, 387, 419, 1022
TaiI	ACGT	1 cut(s)	953
TaqI	TCGA	3 cut(s)	421, 445, 734
TasI	AATT	4 cut(s)	94, 439, 627, 1003
TfiI	GAWTC	5 cut(s)	490, 551, 866, 974, 1034
Tru1I	TTAA	3 cut(s)	36, 77, 630
Tru9I	TTAA	3 cut(s)	36, 77, 630
TscAI	CASTG	4 cut(s)	373, 390, 847, 889
TseFI	GTSAC	3 cut(s)	123, 646, 910
TseI	GCWGC	2 cut(s)	587, 815
Tsp45I	GTSAC	3 cut(s)	123, 646, 910
TspDTI	ATGAA	4 cut(s)	45, 189, 498, 996
TspRI	CASTG	4 cut(s)	373, 390, 847, 889
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	439, 1003
XmiI	GTMKAC	1 cut(s)	421
XmnI	GAANNNNTTC	2 cut(s)	52, 489
XspI	CTAG	2 cut(s)	147, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.