Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013253

Physical Location & Seq

Genomic Coordinates Forward (+)

9638541 .. 9639814

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0112700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAGACACTTGCCTTTATCATCGTTTCCCTAACTCTGGTGTTAGAGACCTATGCAGATGTTGCCAGCCTCATTACCCCATCTCTTTTCGATCAAATGCTGAAATATCGAAACGATGGGCGCTGCCCTAGCAATGGGTTCTACAAGTATGACGCTTTCATTTCTGCTGCTCGATCTTTCAATGGGTTTGGCACAACAGGCGATGTGGCTACCCAGAAAAAAGAGCTTGCTGCTTTCTTGGGTCAAACCTCTCACGAAACCACTGGAGGATGGCCAAGTGCACCAGATGGTCCTTATGCTTGGGGATATTGCTTTATCAGGGAAAACAGCCAAGACGTGTACTGCACTCCATCAGCCCAATATCCATGTGCTGCCGGCAAAAAATATTACGGCCGAGGACCAATCCAACTTACTCACAACTACAACTATGCTCAAGCGGGTAGAGCAATCGGAGTGGATCTGATAAACAATCCAGATCTAGTAGCCACAGACCCGGTTGTATCATTCAAGACAGCTATATGGTTTTGGATGACCCCTCAAGGAAACAAACCATCAAGTCACGACGTCATTACCGGTCGTTGGAATCCATCTGCTGCAGATAGATCGGCGGGTCGGGTCCCTGGATATGGAGTGATTACAAACATAATTAATGGCGGACTTGAATGTGGGCATGGTCAAGATGATAGGGTAGTTGATCGGATCGGGTTCTACAAGAGGTACTGTGGCATATTGGGAGTGAGCACGGGGGACAACTTGGACTGTAACAATCAAAGACCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000785 GO:0000790 GO:0001701 GO:0001824 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006335 GO:0006336 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009790 GO:0009792 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034723 GO:0034724 GO:0034728 GO:0042393 GO:0043009 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0044877 GO:0046483 GO:0048856 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHNi-TPR

Protein Analysis

260

Amino Acids

28.45

Weight (kDa)

7.55

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	24 - 254	2.2e-131	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37210 AT4G37210
fragaria_vesca	FvH4_1g14490
malus_domestica	MD02G1158400.v1.1 MD15G1273200.v1.1
prunus_persica	Prupe.7G145400_v2.0.a1
pyrus_communis	pycom02g12490 pycom15g23640
rosa_chinensis	RchiOBHm_Chr2g0103241
rosa_laevigata	RLG00000017217
rosa_multiflora	Rmu_ssc0000232.1_g000001
rosa_roxburghii	Rroxscaffold_2G00139830
rosa_rugosa	Rorug02G0112700
rosa_samantha	Rh2AG161400 Rh2BG168200 Rh2CG168300 Rh2DG167100
rosa_wichuraiana	Rw2G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
AciI	CCGC	3 cut(s)	437, 608, 654
AclWI	GGATC	2 cut(s)	465, 707
AcoI	YGGCCR	2 cut(s)	272, 391
AcyI	GRCGYC	1 cut(s)	564
AfaI	GTAC	2 cut(s)	341, 719
AfiI	CCNNNNNNNGG	4 cut(s)	37, 134, 579, 626
AflIII	ACRYGT	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	181, 508, 662
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	2 cut(s)	226, 515
AluI	AGCT	2 cut(s)	226, 515
Alw21I	GWGCWC	2 cut(s)	283, 743
Alw26I	GTCTC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	465, 707
AoxI	GGCC	2 cut(s)	272, 391
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	5 cut(s)	123, 167, 230, 371, 593
AseI	ATTAAT	1 cut(s)	648
AsiGI	ACCGGT	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	290, 398, 616
AsuC2I	CCSGG	1 cut(s)	494
AvaII	GGWCC	3 cut(s)	290, 398, 616
BaeGI	GKGCMC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	283, 743
BbvI	GCAGC	5 cut(s)	110, 154, 217, 358, 580
BccI	CCATC	7 cut(s)	88, 110, 264, 281, 358, 559, 595
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	129, 479
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	124
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	5 cut(s)	124, 168, 231, 372, 594
BlsI	GCNGC	5 cut(s)	125, 169, 232, 373, 595
Bme1390I	CCNGG	2 cut(s)	494, 621
Bme18I	GGWCC	3 cut(s)	290, 398, 616
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	290, 398, 616
BmiI	GGNNCC	2 cut(s)	617, 618
BmrFI	CCNGG	2 cut(s)	494, 621
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	417, 522
BpuMI	CCSGG	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	394, 619
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 134, 579, 626
Bse118I	RCCGGY	2 cut(s)	374, 572
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	394, 619
BseGI	GGATG	2 cut(s)	275, 534
BseLI	CCNNNNNNNGG	4 cut(s)	37, 134, 579, 626
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	283
BseX3I	CGGCCG	1 cut(s)	391
BseXI	GCAGC	5 cut(s)	110, 154, 217, 358, 580
BsgI	GTGCAG	1 cut(s)	328
Bsh1285I	CGRYCG	2 cut(s)	394, 577
BshFI	GGCC	2 cut(s)	274, 393
BshTI	ACCGGT	1 cut(s)	572
BsiEI	CGRYCG	2 cut(s)	394, 577
BsiHKAI	GWGCWC	2 cut(s)	283, 743
BsiSI	CCGG	3 cut(s)	375, 494, 573
BslFI	GGGAC	2 cut(s)	602, 761
BslI	CCNNNNNNNGG	4 cut(s)	37, 134, 579, 626
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	602, 761
BsnI	GGCC	2 cut(s)	274, 393
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	283, 743
Bsp143I	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
BspACI	CCGC	3 cut(s)	437, 608, 654
BspANI	GGCC	2 cut(s)	274, 393
BspLI	GGNNCC	2 cut(s)	617, 618
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	465, 707
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	139
BsrFI	RCCGGY	2 cut(s)	374, 572
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	2 cut(s)	374, 572
BssECI	CCNNGG	2 cut(s)	394, 619
BssMI	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
BssNI	GRCGYC	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	722, 761
BstACI	GRCGYC	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	67, 228, 376
BstF5I	GGATG	2 cut(s)	275, 534
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	7 cut(s)	94, 176, 460, 478, 605, 697, 702
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
BstMCI	CGRYCG	2 cut(s)	394, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 129, 198, 443
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	492, 619
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	5 cut(s)	110, 154, 217, 358, 580
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	457, 475
BstYI	RGATCY	2 cut(s)	457, 475
BstZI	CGGCCG	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	274, 393
BtgZI	GCGATG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	275, 534
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	67, 228, 376
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	2 cut(s)	374, 572
Cfr13I	GGNCC	3 cut(s)	290, 398, 616
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	340, 718
CspAI	ACCGGT	1 cut(s)	572
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	2 cut(s)	366, 671
CviJI	RGCY	9 cut(s)	69, 209, 226, 274, 330, 356, 393, 485, 515
CviKI_1	RGCY	9 cut(s)	69, 209, 226, 274, 330, 356, 393, 485, 515
CviQI	GTAC	2 cut(s)	340, 718
DpnI	GATC	7 cut(s)	93, 175, 459, 477, 604, 696, 701
DpnII	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
EaeI	YGGCCR	2 cut(s)	272, 391
EagI	CGGCCG	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	669
EclXI	CGGCCG	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	3 cut(s)	290, 398, 616
Eco52I	CGGCCG	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	619
FaeI	CATG	2 cut(s)	369, 674
FaqI	GGGAC	2 cut(s)	602, 761
FatI	CATG	2 cut(s)	365, 670
FauI	CCCGC	2 cut(s)	430, 601
Fnu4HI	GCNGC	5 cut(s)	124, 168, 231, 372, 594
FokI	GGATG	2 cut(s)	282, 541
Fsp4HI	GCNGC	5 cut(s)	124, 168, 231, 372, 594
FspBI	CTAG	2 cut(s)	129, 479
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	5 cut(s)	124, 168, 231, 372, 594
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	274, 393
HapII	CCGG	3 cut(s)	375, 494, 573
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	2 cut(s)	369, 674
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	3 cut(s)	375, 494, 573
Hpy166II	GTNNAC	2 cut(s)	281, 340
Hpy188I	TCNGA	3 cut(s)	452, 462, 699
Hpy188III	TCNNGA	5 cut(s)	254, 473, 508, 560, 677
Hpy8I	GTNNAC	2 cut(s)	281, 340
Hpy99I	CGWCG	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	722, 761
HpyCH4IV	ACGT	2 cut(s)	336, 564
HpyCH4V	TGCA	4 cut(s)	56, 281, 345, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 129, 198, 443
HpySE526I	ACGT	2 cut(s)	336, 564
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	369, 674
HspAI	GCGC	1 cut(s)	121
KflI	GGGWCCC	1 cut(s)	616
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Kzo9I	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
Lsp1109I	GCAGC	5 cut(s)	110, 154, 217, 358, 580
MaeI	CTAG	2 cut(s)	129, 479
MaeII	ACGT	2 cut(s)	336, 564
MaeIII	GTNAC	2 cut(s)	557, 761
MalI	GATC	7 cut(s)	93, 175, 459, 477, 604, 696, 701
MboI	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	2 cut(s)	457, 475
MhlI	GDGCHC	2 cut(s)	283, 743
MlsI	TGGCCA	1 cut(s)	274
MluCI	AATT	1 cut(s)	645
MluNI	TGGCCA	1 cut(s)	274
MmeI	TCCRAC	2 cut(s)	430, 560
MnlI	CCTC	6 cut(s)	80, 259, 260, 389, 546, 708
Mox20I	TGGCCA	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	274
MspI	CCGG	3 cut(s)	375, 494, 573
MspR9I	CCNGG	2 cut(s)	494, 621
MvaI	CCWGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	4 cut(s)	62, 129, 198, 443
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	2 cut(s)	369, 674
NlaIV	GGNNCC	2 cut(s)	617, 618
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	557
PdiI	GCCGGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	583
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	5 cut(s)	125, 169, 232, 373, 595
PpuMI	RGGWCCY	1 cut(s)	616
PshBI	ATTAAT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	617, 618
PspPI	GGNCC	3 cut(s)	290, 398, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	457, 475
RsaI	GTAC	2 cut(s)	341, 719
RsaNI	GTAC	2 cut(s)	340, 718
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	5 cut(s)	124, 168, 231, 372, 594
Sau3AI	GATC	7 cut(s)	91, 173, 457, 475, 602, 694, 699
Sau96I	GGNCC	3 cut(s)	290, 398, 616
ScrFI	CCNGG	2 cut(s)	494, 621
SduI	GDGCHC	2 cut(s)	283, 743
SetI	ASST	7 cut(s)	53, 228, 251, 339, 517, 567, 719
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	3 cut(s)	290, 398, 616
SmlI	CTYRAG	2 cut(s)	432, 537
SmoI	CTYRAG	2 cut(s)	432, 537
Sse9I	AATT	1 cut(s)	645
SsiI	CCGC	3 cut(s)	437, 608, 654
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	2 cut(s)	129, 479
StyD4I	CCNGG	2 cut(s)	492, 619
TaaI	ACNGT	2 cut(s)	722, 761
TaiI	ACGT	2 cut(s)	339, 567
TaqI	TCGA	3 cut(s)	90, 109, 172
TasI	AATT	1 cut(s)	645
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	5 cut(s)	123, 167, 230, 371, 593
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	17, 148
TspRI	CASTG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	3 cut(s)	290, 398, 616
VspI	ATTAAT	1 cut(s)	648
XspI	CTAG	2 cut(s)	129, 479
ZraI	GACGTC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.