MD15G1273200.v1.1

Nuclear autoantigenic sperm protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
23843278 .. 23846978
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1273200.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGGTCGAAGAAGCATCAGCGTCGGCGTCGGCGACGGCGAGCGAAACACTAACCCAAAACACAGCCTTGGAGTCTCAGAGGTCCAACGAGGCCACCATCACGGAGGTAGCTCAGGGAGGCACCGAGTCTACTTGCAACAACGAAAGCGCGGAAACTTCAGCTGTCAGCTCCAATGGCGATCCCGAAAAGTCGCTCGAGTTTTCCGACGAGCTGATGGAGAAGGGCTCCAAGGCGGTCAAGGACTCTGATTTCGGCGAGGCCACCGAGTGCTTCAGCCGTGCTTTGGAAATCAGGGTTGCACATTTCGGAGAACTTGCTCCTCAGTGTGTCAATGCTTACTATAAATATGGATGTGCATTGCTTTACAAAGCTCAAGAGGAGACCGATCCATTGGGTGCTGTACCCAAGAAGGAGGGTGAATCGCAGCAAGAATCTGCTAAGAATGTTGTAAATGGTAAATCTTCCACAGCTGCTGTTTCAAGTAATGCTGAACAGGATGCAAGTTTGAGTAATCAGGAGGGAGCAGATGCTGATGGTGTTTCTAGTGGAAAAGACAAAGATGAAGATGATGATAGCGATGATGAAGACCTGGCTGAAGCAGATGCAGATGAAGATGAAACTGACCTTGATTTGGCATGGAAAATGCTAGATGTGGCAAGAGCCATTGTTGAAAAAAACCCGGCTGACACATTGGAGAAGGTCGACATATTATCGGCTTTGGCAGAAGTTGCACTGGAAAGAGAGGACATTGAAACTTCTCTCAGTGACTACCAGAAAGCACTTTCCATTTTGGAGCAGTTGGTTGAGCCTGATAGTCGACGTATAGCTGAACTAAATTTTCGGATATGTTTGTGTCTAGAGATTGGCTCTAAGCCTGAGGAAGCCATTCTGTATTGCCAGAAGGCTATATCAACCTGCAAGTCTCGTGTGCGGCGGCTCATGCTTGAATCAAGGAGTTTGACGGAATCCACAACGTCGTTGCCTGCTTCTGTATTGGAGCCAGGTGTCACGCTCTCCTCAAATATGACCAAGTCTGATAATATTGTGACAGATATACAGGCAGAGATTGAAACACTAACTGGACTCGCTGGAGATCTGGAAAAGAAGCTTGAAGATCTGCAACAACTGGCGTCAAACCCAAAATCCATTCTCGCTGAGATTATGGGATTTGTGTCTGCCAAGGCAAAAGGCACTGAGAAAAGTGAATCTCCGTCAGTGATTAGCTCTTCAAGGATGGGAACTGCTGACAACAATGGAGGTTTTGACTCCCCAACTGTATCTACTGCTCATACGAATGGAGCTTCTGGAGTCACACATCTTGGTGTGGTAGGAAGAGGAGTCAAGCGAGTGTTGATGAACACAGGCTCGGGAGAATCAAGCGCATCGAAGAAACCTGCTTTGGATTCATCGCAAGACAAGGGTGAGGGAAATGCGTCATGA

Protein Analysis

480

Amino Acids

50.67

Weight (kDa)

4.38

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013253)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 923, 1402
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 3 cut(s) 128, 702, 817
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 149, 233, 931, 934
AclWI GGATC 2 cut(s) 173, 380
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 3 cut(s) 141, 256, 615
AcyI GRCGYC 2 cut(s) 26, 1130
AdeI CACNNNGTG 1 cut(s) 267
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 283, 631
AgsI TTSAA 7 cut(s) 480, 671, 752, 947, 1070, 1112, 1230
AjnI CCWGG 2 cut(s) 588, 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 1382, 1414
Alw26I GTCTC 3 cut(s) 78, 374, 927
AlwI GGATC 2 cut(s) 173, 380
AlwNI CAGNNNCTG 2 cut(s) 473, 530
Ama87I CYCGRG 2 cut(s) 194, 1366
AoxI GGCC 2 cut(s) 90, 258
ApeKI GCWGC 2 cut(s) 424, 470
ApoI RAATTY 1 cut(s) 835
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 1 cut(s) 885
AspLEI GCGC 2 cut(s) 149, 1382
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 428, 1433
AvaI CYCGRG 2 cut(s) 194, 1366
AvaII GGWCC 1 cut(s) 81
AxyI CCTNAGG 1 cut(s) 876
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 227
BauI CACGAG 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 436, 457
BccI CCATC 4 cut(s) 104, 208, 527, 1228
BceAI ACGGC 2 cut(s) 51, 261
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 590, 1002
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 3 cut(s) 78, 374, 927
BfaI CTAG 3 cut(s) 543, 647, 857
BfuAI ACCTGC 2 cut(s) 923, 1402
BglII AGATCT 2 cut(s) 1093, 1114
BisI GCNGC 4 cut(s) 425, 471, 932, 935
BlsI GCNGC 4 cut(s) 426, 472, 933, 936
Bme1390I CCNGG 3 cut(s) 590, 680, 1002
Bme18I GGWCC 1 cut(s) 81
BmeT110I CYCGRG 2 cut(s) 194, 1366
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 121, 226, 999
BmrFI CCNGG 3 cut(s) 590, 680, 1002
BmsI GCATC 5 cut(s) 23, 487, 517, 592, 1391
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 851, 883
BpmI CTGGAG 2 cut(s) 1110, 1326
Bpu10I CCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 680
BsaHI GRCGYC 2 cut(s) 26, 1130
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 66, 228, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 631
Bse1I ACTGG 3 cut(s) 738, 1084, 1131
Bse21I CCTNAGG 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 590, 1002
BseDI CCNNGG 3 cut(s) 66, 228, 1179
BseGI GGATG 3 cut(s) 356, 502, 1239
BseLI CCNNNNNNNGG 2 cut(s) 283, 631
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 7 cut(s) 89, 125, 335, 775, 867, 1146, 1185
BseNI ACTGG 3 cut(s) 738, 1084, 1131
BseRI GAGGAG 4 cut(s) 309, 392, 1006, 1350
BseXI GCAGC 2 cut(s) 436, 457
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 92, 260
BshNI GGYRCC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 194, 1366
BsiSI CCGG 1 cut(s) 680
BslI CCNNNNNNNGG 2 cut(s) 283, 631
BsmAI GTCTC 3 cut(s) 78, 374, 927
BsnI GGCC 2 cut(s) 92, 260
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 2 cut(s) 194, 1366
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 178, 385, 1093, 1114
BspACI CCGC 4 cut(s) 149, 233, 931, 934
BspANI GGCC 2 cut(s) 92, 260
BspCNI CTCAG 7 cut(s) 88, 124, 334, 774, 868, 1147, 1186
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 1436
BspLI GGNNCC 3 cut(s) 121, 226, 999
BspMI ACCTGC 2 cut(s) 923, 1402
BspPI GGATC 2 cut(s) 173, 380
BspQI GCTCTTC 1 cut(s) 1231
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 3 cut(s) 738, 1084, 1131
BssECI CCNNGG 3 cut(s) 66, 228, 1179
BssMI GATC 4 cut(s) 178, 385, 1093, 1114
BssNI GRCGYC 2 cut(s) 26, 1130
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 3 cut(s) 66, 228, 1179
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 2 cut(s) 590, 1002
Bst4CI ACNGT 1 cut(s) 1276
Bst6I CTCTTC 2 cut(s) 1231, 1327
BstACI GRCGYC 2 cut(s) 26, 1130
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 2 cut(s) 40, 984
BstDEI CTNAG 9 cut(s) 75, 111, 321, 438, 761, 870, 876, 1155, 1194
BstF5I GGATG 3 cut(s) 356, 502, 1239
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 2 cut(s) 149, 1382
BstKTI GATC 4 cut(s) 181, 388, 1096, 1117
BstMAI GTCTC 3 cut(s) 78, 374, 927
BstMBI GATC 4 cut(s) 178, 385, 1093, 1114
BstMWI GCNNNNNNNGC 3 cut(s) 174, 728, 940
BstNI CCWGG 2 cut(s) 590, 1002
BstSCI CCNGG 3 cut(s) 588, 678, 1000
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 436, 457
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 1093, 1114
BstYI RGATCY 2 cut(s) 1093, 1114
Bsu36I CCTNAGG 1 cut(s) 876
BsuRI GGCC 2 cut(s) 92, 260
BtgZI GCGATG 2 cut(s) 591, 1392
BtsCI GGATG 3 cut(s) 356, 502, 1239
BtsIMutI CAGTG 5 cut(s) 329, 731, 769, 1191, 1221
BveI ACCTGC 2 cut(s) 923, 1402
Cac8I GCNNGC 2 cut(s) 40, 984
CaiI CAGNNNCTG 2 cut(s) 473, 530
CciI TCATGA 1 cut(s) 1436
CfoI GCGC 2 cut(s) 149, 1382
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 4 cut(s) 9, 15, 1119, 1422
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 636, 940, 1437
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 9 cut(s) 75, 111, 321, 438, 761, 870, 876, 1155, 1194
DpnI GATC 4 cut(s) 180, 387, 1095, 1116
DpnII GATC 4 cut(s) 178, 385, 1093, 1114
DraIII CACNNNGTG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 1231, 1327
EarI CTCTTC 2 cut(s) 1231, 1327
Eco130I CCWWGG 3 cut(s) 66, 228, 1179
Eco24I GRGCYC 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 3 cut(s) 141, 256, 615
Eco81I CCTNAGG 1 cut(s) 876
Eco88I CYCGRG 2 cut(s) 194, 1366
EcoRII CCWGG 2 cut(s) 588, 1000
EcoT14I CCWWGG 3 cut(s) 66, 228, 1179
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 3 cut(s) 66, 228, 1179
FaeI CATG 3 cut(s) 639, 943, 1440
FatI CATG 3 cut(s) 635, 939, 1436
FblI GTMKAC 3 cut(s) 128, 702, 817
Fnu4HI GCNGC 4 cut(s) 425, 471, 932, 935
FokI GGATG 3 cut(s) 363, 509, 1246
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 4 cut(s) 425, 471, 932, 935
FspBI CTAG 3 cut(s) 543, 647, 857
GlaI GCGC 2 cut(s) 148, 1381
GluI GCNGC 4 cut(s) 425, 471, 932, 935
GsuI CTGGAG 2 cut(s) 1110, 1326
HaeIII GGCC 2 cut(s) 92, 260
HapII CCGG 1 cut(s) 680
HgaI GACGC 4 cut(s) 9, 15, 1119, 1422
HhaI GCGC 2 cut(s) 149, 1382
Hin1I GRCGYC 2 cut(s) 26, 1130
Hin1II CATG 3 cut(s) 639, 943, 1440
Hin6I GCGC 2 cut(s) 147, 1380
HinP1I GCGC 2 cut(s) 147, 1380
HincII GTYRAC 2 cut(s) 703, 818
HindII GTYRAC 2 cut(s) 703, 818
HindIII AAGCTT 1 cut(s) 1106
HpaII CCGG 1 cut(s) 680
HphI GGTGA 2 cut(s) 428, 1433
Hpy166II GTNNAC 3 cut(s) 129, 703, 818
Hpy188I TCNGA 6 cut(s) 78, 205, 247, 308, 843, 1036
Hpy188III TCNNGA 8 cut(s) 182, 374, 515, 857, 1097, 1305, 1368, 1437
Hpy8I GTNNAC 3 cut(s) 129, 703, 818
Hpy99I CGWCG 6 cut(s) 25, 31, 37, 209, 822, 979
HpyAV CCTTC 4 cut(s) 214, 403, 691, 895
HpyCH4III ACNGT 1 cut(s) 1276
HpyCH4IV ACGT 2 cut(s) 820, 974
HpyCH4V TGCA 8 cut(s) 135, 299, 356, 500, 605, 731, 918, 1120
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 728, 940
HpyF3I CTNAG 9 cut(s) 75, 111, 321, 438, 761, 870, 876, 1155, 1194
HpySE526I ACGT 2 cut(s) 820, 974
Hsp92I GRCGYC 2 cut(s) 26, 1130
Hsp92II CATG 3 cut(s) 639, 943, 1440
HspAI GCGC 2 cut(s) 147, 1380
Kzo9I GATC 4 cut(s) 178, 385, 1093, 1114
LguI GCTCTTC 1 cut(s) 1231
LmnI GCTCC 7 cut(s) 173, 230, 322, 521, 793, 997, 1298
Lsp1109I GCAGC 2 cut(s) 436, 457
LweI GCATC 5 cut(s) 23, 487, 517, 592, 1391
MaeI CTAG 3 cut(s) 543, 647, 857
MaeII ACGT 2 cut(s) 820, 974
MaeIII GTNAC 4 cut(s) 764, 1006, 1045, 1309
MalI GATC 4 cut(s) 180, 387, 1095, 1116
MboI GATC 4 cut(s) 178, 385, 1093, 1114
MboII GAAGA 9 cut(s) 20, 453, 575, 596, 623, 1124, 1218, 1344, 1399
MflI RGATCY 2 cut(s) 1093, 1114
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 1 cut(s) 835
MlyI GAGTC 7 cut(s) 80, 134, 236, 1077, 1259, 1317, 1347
MmeI TCCRAC 2 cut(s) 108, 228
MroXI GAANNNNTTC 1 cut(s) 885
MslI CAYNNNNRTG 2 cut(s) 1293, 1320
MspA1I CMGCKG 2 cut(s) 161, 470
MspI CCGG 1 cut(s) 680
MspR9I CCNGG 3 cut(s) 590, 680, 1002
MvaI CCWGG 2 cut(s) 590, 1002
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 174, 728, 940
NciI CCSGG 1 cut(s) 680
NdeII GATC 4 cut(s) 178, 385, 1093, 1114
NlaIII CATG 3 cut(s) 639, 943, 1440
NlaIV GGNNCC 3 cut(s) 121, 226, 999
NmuCI GTSAC 4 cut(s) 764, 1006, 1045, 1309
PaeR7I CTCGAG 1 cut(s) 194
PagI TCATGA 1 cut(s) 1436
PciSI GCTCTTC 1 cut(s) 1231
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 35, 201
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 7 cut(s) 419, 431, 947, 965, 1205, 1373, 1403
PflFI GACNNNGTC 1 cut(s) 1030
PkrI GCNGC 4 cut(s) 426, 472, 933, 936
PleI GAGTC 7 cut(s) 79, 133, 236, 1077, 1259, 1316, 1346
PpsI GAGTC 7 cut(s) 79, 133, 236, 1077, 1259, 1316, 1346
Psp6I CCWGG 2 cut(s) 588, 1000
PspGI CCWGG 2 cut(s) 588, 1000
PspN4I GGNNCC 3 cut(s) 121, 226, 999
PspPI GGNCC 1 cut(s) 81
PspXI VCTCGAGB 1 cut(s) 194
PstNI CAGNNNCTG 2 cut(s) 473, 530
PsuI RGATCY 2 cut(s) 1093, 1114
PsyI GACNNNGTC 1 cut(s) 1030
PvuII CAGCTG 2 cut(s) 161, 470
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 2 cut(s) 1293, 1320
SalI GTCGAC 2 cut(s) 701, 816
SapI GCTCTTC 1 cut(s) 1231
SatI GCNGC 4 cut(s) 425, 471, 932, 935
Sau3AI GATC 4 cut(s) 178, 385, 1093, 1114
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 7 cut(s) 80, 134, 236, 1077, 1259, 1317, 1347
ScrFI CCNGG 3 cut(s) 590, 680, 1002
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 5 cut(s) 23, 487, 517, 592, 1391
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 1293, 1320
SmlI CTYRAG 2 cut(s) 194, 372
SmoI CTYRAG 2 cut(s) 194, 372
Sse9I AATT 1 cut(s) 835
SsiI CCGC 4 cut(s) 149, 233, 931, 934
SspI AATATT 1 cut(s) 1042
SspMI CTAG 3 cut(s) 543, 647, 857
StyD4I CCNGG 3 cut(s) 588, 678, 1000
StyI CCWWGG 3 cut(s) 66, 228, 1179
TaaI ACNGT 1 cut(s) 1276
TaiI ACGT 2 cut(s) 823, 977
TaqI TCGA 5 cut(s) 6, 195, 702, 817, 1385
TaqII GACCGA 1 cut(s) 398
TasI AATT 1 cut(s) 835
TauI GCSGC 2 cut(s) 934, 937
TfiI GAWTC 7 cut(s) 419, 431, 947, 965, 1205, 1373, 1403
TscAI CASTG 5 cut(s) 329, 738, 769, 1198, 1221
TseFI GTSAC 4 cut(s) 764, 1006, 1045, 1309
TseI GCWGC 2 cut(s) 424, 470
Tsp45I GTSAC 4 cut(s) 764, 1006, 1045, 1309
TspDTI ATGAA 6 cut(s) 576, 597, 624, 630, 1370, 1395
TspGWI ACGGA 3 cut(s) 116, 977, 1200
TspRI CASTG 5 cut(s) 329, 738, 769, 1198, 1221
Tth111I GACNNNGTC 1 cut(s) 1030
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 835
XbaI TCTAGA 1 cut(s) 856
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 3 cut(s) 128, 702, 817
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 3 cut(s) 543, 647, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.