pycom02g12490

Nuclear autoantigenic sperm protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
9084167 .. 9087575
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12490.2

Sequence Viewer

Length: 1584 bp
ATGCTCCGTTTCGAGGTTCATAAAAGACAAAAACGAGGTTTTCATTTTCATTTTCCCTCTACAAAAATTTCGGGGTTTTTTTTCTCATCGAGTTCTCTACGTTTTTGCGCCAAGAAAGAGAGGGTTTTTGAAACGATGGTAGAAGAAGCATCAGCGTCGGCGTCGGCGACGGCGACGGCGAGCGAAACCCTAACCCAAACCGCCGCGCTGGAGGCACAGAGGTCGAACGAGGCCACCATCACGGAGGTAGCTCAGGGAGGCGCCGAGTCCACTTGCAACAACGACAGCGCGGAAGCTTCAGCTGTCAGCTCCGATGGAGATCGTGAAAAGTCGCTCGAGTTCGCCGACGAGCTGATTGAGAAGGGCTCCAAGGCGGTCAAGGACTCTGATTACGGCGAAGCCACCGAGTGCTTCAGCCGTGCCTTGGAAATCAGGGTTGCACATTTCGGTGAACTTGCTCCTCAGTGTGTCAATGCGTACTATAAATATGGATGTGCATTGCTTTACAAAGCTCAAGAGGAGACTGATCCATTGGGTGCTGTACCCAAGAAGGAGGACGAGTCGCAGCAAGAATCTGCTAAGAATGGTGTAAATGGTGAATCTTCCACAGCTTCTGTTTCATGTAATGCCGAACAGGATGCAAGTTTGAGTAATCAGGAGGGAGCAGCTGATGATGGTGTTTCTGGTGGAAAAGACCAGGATGAAGATGGTGAGAATAGCGATGATGCGGACCTGGCTGAAGCAGATGCAGATGAAGATGAAACTGACCTTGATTTGGCATGGAAAACGCTAGATGTAGCAAGAGCTATTGTTGAAAAACACCCGGCTGACACAATGGAGAAGGTGGACATATTATCAGCTTTGGCAGAAGTTGCATTGGAAAGAGAGGACATTCAAACTTCTCTCAGTGACTATGAAAAAGCACTTTCCATTTTGGAGCGGTTGGTTGAGCCTGATAGCCGACGTATAGCTGAACTAAATTTTCGAATATGTTTGTGTCTAGAGATTGGCTCCAAGCCTGAGGAAGCCATTCCGTATTGCCAGAAGGCTATATCAACCTGTAGGTCTTGTGTGCGGCGGCTCATGCTTGAATCAAGGAGTTTCTCGGAGTCCACAACATCGTCTTCTGCTTCTGTATTGGAGCCTGGTGTCACGCTTACCTCAAATGTTACCGAGTCTGATAATAATGTGACGGATAAACAGGCAGAGATTGAAACACTAACTGAACTCTCTGGAGATCTGGAAAAGAAGCTTGAAGATCTGCAACAGTTGGCGTCAAACTCAAAATCCATTCTCGCTGAGATTCTGGGATTAGCATCTGCCAAGGCAAAAGGGACTGAGAAAAGTGAATCTTCAGCAGTGGTGAGCTCTTCAAGGATGGGAACTGCTGACAACAATGGAGGTTTCGACTCCCCAACTGTTTCTACTGCTCATACAAATGGAGCTTCTGGAGTCACACATCTTGGTGTGGTGGGAAGAGGAGTCAAGCGAGTGTTGATGAACGCAGGCTCGGGAGAATCAAGCGCATCGAAGAAGCCTGCTTTGGATTCATCGGAAGATAAGGGTGAGGGCAACGTGTCGTGA

Protein Analysis

528

Amino Acids

56.18

Weight (kDa)

4.56

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013253)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 940
AccII CGCG 2 cut(s) 206, 290
AciI CCGC 8 cut(s) 201, 204, 290, 374, 728, 940, 1075, 1078
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 2 cut(s) 66, 979
AcuI CTGAAG 4 cut(s) 282, 397, 759, 1338
AcyI GRCGYC 3 cut(s) 161, 261, 1274
AdeI CACNNNGTG 1 cut(s) 408
AfaI GTAC 2 cut(s) 479, 543
AfiI CCNNNNNNNGG 3 cut(s) 13, 424, 775
AflIII ACRYGT 1 cut(s) 1575
AgsI TTSAA 7 cut(s) 131, 815, 896, 1091, 1214, 1256, 1374
AjnI CCWGG 3 cut(s) 696, 732, 1144
AjuI GAANNNNNNNTTGG 2 cut(s) 1526, 1558
Alw21I GWGCWC 1 cut(s) 1370
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 521
AlwNI CAGNNNCTG 1 cut(s) 614
Ama87I CYCGRG 2 cut(s) 335, 1510
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 565, 665
ApoI RAATTY 2 cut(s) 66, 979
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 5 cut(s) 110, 208, 263, 290, 1526
AspS9I GGNCC 1 cut(s) 730
AsuC2I CCSGG 1 cut(s) 824
AsuHPI GGTGA 5 cut(s) 461, 608, 722, 1375, 1577
AsuII TTCGAA 1 cut(s) 985
AvaI CYCGRG 2 cut(s) 335, 1510
AvaII GGWCC 1 cut(s) 730
AxyI CCTNAGG 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 368, 1370
BbsI GAAGAC 1 cut(s) 1116
Bbv12I GWGCWC 1 cut(s) 1370
BbvI GCAGC 2 cut(s) 577, 677
BccI CCATC 6 cut(s) 130, 245, 308, 668, 701, 1372
BceAI ACGGC 4 cut(s) 186, 192, 402, 409
BcgI CGANNNNNNTGC 6 cut(s) 138, 172, 204, 238, 620, 654
BciT130I CCWGG 3 cut(s) 698, 734, 1146
BcnI CCSGG 1 cut(s) 824
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 2 cut(s) 791, 1001
BfmI CTRYAG 1 cut(s) 1060
BfoI RGCGCY 1 cut(s) 264
BglII AGATCT 2 cut(s) 1237, 1258
BisI GCNGC 5 cut(s) 204, 566, 666, 1076, 1079
BlsI GCNGC 5 cut(s) 205, 567, 667, 1077, 1080
Bme1390I CCNGG 4 cut(s) 698, 734, 824, 1146
Bme18I GGWCC 1 cut(s) 730
BmeT110I CYCGRG 2 cut(s) 335, 1510
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 4 cut(s) 262, 367, 1012, 1143
BmrFI CCNGG 4 cut(s) 698, 734, 824, 1146
BmsI GCATC 6 cut(s) 158, 628, 715, 736, 1325, 1535
BpiI GAAGAC 1 cut(s) 1116
BplI GAGNNNNNCTC 4 cut(s) 350, 382, 995, 1027
BpmI CTGGAG 3 cut(s) 230, 1254, 1470
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 985
BpuEI CTTGAG 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 824
BsaBI GATNNNNATC 2 cut(s) 318, 1315
BsaHI GRCGYC 3 cut(s) 161, 261, 1274
BsaJI CCNNGG 3 cut(s) 369, 423, 1323
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 424, 775
Bse21I CCTNAGG 1 cut(s) 1020
Bse3DI GCAATG 1 cut(s) 497
Bse8I GATNNNNATC 2 cut(s) 318, 1315
BseBI CCWGG 3 cut(s) 698, 734, 1146
BseDI CCNNGG 3 cut(s) 369, 423, 1323
BseGI GGATG 4 cut(s) 497, 643, 706, 1383
BseJI GATNNNNATC 2 cut(s) 318, 1315
BseLI CCNNNNNNNGG 3 cut(s) 13, 424, 775
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 6 cut(s) 266, 476, 919, 1011, 1290, 1329
BseRI GAGGAG 3 cut(s) 450, 533, 1494
BseXI GCAGC 2 cut(s) 577, 677
Bsh1236I CGCG 2 cut(s) 206, 290
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 1370
BsiHKCI CYCGRG 2 cut(s) 335, 1510
BsiSI CCGG 1 cut(s) 824
BslFI GGGAC 1 cut(s) 1348
BslI CCNNNNNNNGG 3 cut(s) 13, 424, 775
BsmAI GTCTC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 1348
BsnI GGCC 1 cut(s) 233
BsoBI CYCGRG 2 cut(s) 335, 1510
Bsp119I TTCGAA 1 cut(s) 985
Bsp1286I GDGCHC 2 cut(s) 368, 1370
Bsp143I GATC 4 cut(s) 319, 526, 1237, 1258
BspACI CCGC 8 cut(s) 201, 204, 290, 374, 728, 940, 1075, 1078
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 6 cut(s) 265, 475, 918, 1012, 1291, 1330
BspFNI CGCG 2 cut(s) 206, 290
BspLI GGNNCC 4 cut(s) 262, 367, 1012, 1143
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 1375
BspT104I TTCGAA 1 cut(s) 985
BspT107I GGYRCC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 940
BsrDI GCAATG 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 369, 423, 1323
BssMI GATC 4 cut(s) 319, 526, 1237, 1258
BssNI GRCGYC 3 cut(s) 161, 261, 1274
BssT1I CCWWGG 3 cut(s) 369, 423, 1323
Bst2UI CCWGG 3 cut(s) 698, 734, 1146
Bst4CI ACNGT 2 cut(s) 1269, 1420
Bst6I CTCTTC 2 cut(s) 1375, 1471
BstACI GRCGYC 3 cut(s) 161, 261, 1274
BstAPI GCANNNNNTGC 1 cut(s) 872
BstBI TTCGAA 1 cut(s) 985
BstC8I GCNNGC 3 cut(s) 181, 1507, 1539
BstDEI CTNAG 7 cut(s) 252, 462, 579, 905, 1020, 1299, 1338
BstF5I GGATG 4 cut(s) 497, 643, 706, 1383
BstFNI CGCG 2 cut(s) 206, 290
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 5 cut(s) 110, 208, 263, 290, 1526
BstKTI GATC 4 cut(s) 322, 529, 1240, 1261
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 4 cut(s) 319, 526, 1237, 1258
BstMWI GCNNNNNNNGC 4 cut(s) 212, 734, 872, 1084
BstNI CCWGG 3 cut(s) 698, 734, 1146
BstSCI CCNGG 4 cut(s) 696, 732, 822, 1144
BstSFI CTRYAG 1 cut(s) 1060
BstUI CGCG 2 cut(s) 206, 290
BstV1I GCAGC 2 cut(s) 577, 677
BstV2I GAAGAC 1 cut(s) 1116
BstX2I RGATCY 2 cut(s) 1237, 1258
BstYI RGATCY 2 cut(s) 1237, 1258
Bsu36I CCTNAGG 1 cut(s) 1020
BsuRI GGCC 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 4 cut(s) 497, 643, 706, 1383
BtsI GCAGTG 1 cut(s) 1365
BtsIMutI CAGTG 3 cut(s) 470, 913, 1365
Cac8I GCNNGC 3 cut(s) 181, 1507, 1539
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 5 cut(s) 110, 208, 263, 290, 1526
Cfr13I GGNCC 1 cut(s) 730
CseI GACGC 3 cut(s) 144, 150, 1263
Csp6I GTAC 2 cut(s) 478, 542
CviAII CATG 3 cut(s) 621, 780, 1084
CviQI GTAC 2 cut(s) 478, 542
DdeI CTNAG 7 cut(s) 252, 462, 579, 905, 1020, 1299, 1338
DinI GGCGCC 1 cut(s) 262
DpnI GATC 4 cut(s) 321, 528, 1239, 1260
DpnII GATC 4 cut(s) 319, 526, 1237, 1258
DraIII CACNNNGTG 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 1375, 1471
EarI CTCTTC 2 cut(s) 1375, 1471
Ecl136II GAGCTC 1 cut(s) 1368
Eco130I CCWWGG 3 cut(s) 369, 423, 1323
Eco24I GRGCYC 2 cut(s) 368, 1370
Eco47I GGWCC 1 cut(s) 730
Eco53kI GAGCTC 1 cut(s) 1368
Eco57I CTGAAG 4 cut(s) 282, 397, 759, 1338
Eco81I CCTNAGG 1 cut(s) 1020
Eco88I CYCGRG 2 cut(s) 335, 1510
EcoICRI GAGCTC 1 cut(s) 1368
EcoRII CCWGG 3 cut(s) 696, 732, 1144
EcoT14I CCWWGG 3 cut(s) 369, 423, 1323
EcoT38I GRGCYC 2 cut(s) 368, 1370
EgeI GGCGCC 1 cut(s) 262
EheI GGCGCC 1 cut(s) 262
ErhI CCWWGG 3 cut(s) 369, 423, 1323
FaeI CATG 3 cut(s) 624, 783, 1087
FalI AAGNNNNNCTT 2 cut(s) 1336, 1368
FaqI GGGAC 1 cut(s) 1348
FatI CATG 3 cut(s) 620, 779, 1083
Fnu4HI GCNGC 5 cut(s) 204, 566, 666, 1076, 1079
FokI GGATG 4 cut(s) 504, 650, 713, 1390
FriOI GRGCYC 2 cut(s) 368, 1370
Fsp4HI GCNGC 5 cut(s) 204, 566, 666, 1076, 1079
FspBI CTAG 2 cut(s) 791, 1001
GlaI GCGC 5 cut(s) 109, 207, 262, 289, 1525
GluI GCNGC 5 cut(s) 204, 566, 666, 1076, 1079
GsuI CTGGAG 3 cut(s) 230, 1254, 1470
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 824
HgaI GACGC 3 cut(s) 144, 150, 1263
HhaI GCGC 5 cut(s) 110, 208, 263, 290, 1526
Hin1I GRCGYC 3 cut(s) 161, 261, 1274
Hin1II CATG 3 cut(s) 624, 783, 1087
Hin6I GCGC 5 cut(s) 108, 206, 261, 288, 1524
HinP1I GCGC 5 cut(s) 108, 206, 261, 288, 1524
HindIII AAGCTT 2 cut(s) 294, 1250
HpaII CCGG 1 cut(s) 824
HphI GGTGA 5 cut(s) 461, 608, 722, 1375, 1577
Hpy166II GTNNAC 4 cut(s) 270, 452, 847, 1113
Hpy188I TCNGA 5 cut(s) 313, 388, 1108, 1180, 1555
Hpy188III TCNNGA 9 cut(s) 323, 515, 656, 1001, 1233, 1241, 1449, 1512, 1581
Hpy8I GTNNAC 4 cut(s) 270, 452, 847, 1113
Hpy99I CGWCG 6 cut(s) 160, 166, 172, 178, 350, 966
HpyAV CCTTC 4 cut(s) 355, 544, 835, 1039
HpyCH4III ACNGT 2 cut(s) 1269, 1420
HpyCH4IV ACGT 3 cut(s) 100, 964, 1575
HpyCH4V TGCA 7 cut(s) 276, 440, 497, 641, 749, 875, 1264
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 734, 872, 1084
HpyF3I CTNAG 7 cut(s) 252, 462, 579, 905, 1020, 1299, 1338
HpySE526I ACGT 3 cut(s) 100, 964, 1575
Hsp92I GRCGYC 3 cut(s) 161, 261, 1274
Hsp92II CATG 3 cut(s) 624, 783, 1087
HspAI GCGC 5 cut(s) 108, 206, 261, 288, 1524
KasI GGCGCC 1 cut(s) 260
Kzo9I GATC 4 cut(s) 319, 526, 1237, 1258
LguI GCTCTTC 1 cut(s) 1375
LmnI GCTCC 9 cut(s) 9, 314, 371, 463, 662, 937, 1016, 1141, 1442
Lsp1109I GCAGC 2 cut(s) 577, 677
LweI GCATC 6 cut(s) 158, 628, 715, 736, 1325, 1535
MaeI CTAG 2 cut(s) 791, 1001
MaeII ACGT 3 cut(s) 100, 964, 1575
MaeIII GTNAC 5 cut(s) 908, 1150, 1168, 1189, 1453
MalI GATC 4 cut(s) 321, 528, 1239, 1260
MbiI CCGCTC 1 cut(s) 940
MboI GATC 4 cut(s) 319, 526, 1237, 1258
MflI RGATCY 2 cut(s) 1237, 1258
MhlI GDGCHC 2 cut(s) 368, 1370
MluCI AATT 2 cut(s) 66, 979
Mly113I GGCGCC 1 cut(s) 261
MlyI GAGTC 8 cut(s) 275, 377, 569, 1118, 1184, 1403, 1461, 1491
MroXI GAANNNNTTC 1 cut(s) 1029
MslI CAYNNNNRTG 3 cut(s) 447, 1437, 1464
MspA1I CMGCKG 2 cut(s) 302, 668
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 4 cut(s) 698, 734, 824, 1146
MvaI CCWGG 3 cut(s) 698, 734, 1146
MvnI CGCG 2 cut(s) 206, 290
MwoI GCNNNNNNNGC 4 cut(s) 212, 734, 872, 1084
NarI GGCGCC 1 cut(s) 261
NciI CCSGG 1 cut(s) 824
NdeII GATC 4 cut(s) 319, 526, 1237, 1258
NlaIII CATG 3 cut(s) 624, 783, 1087
NlaIV GGNNCC 4 cut(s) 262, 367, 1012, 1143
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 4 cut(s) 908, 1150, 1189, 1453
NspV TTCGAA 1 cut(s) 985
PaeR7I CTCGAG 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 1375
PcsI WCGNNNNNNNCGW 4 cut(s) 164, 170, 176, 342
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 7 cut(s) 572, 599, 1091, 1303, 1349, 1517, 1547
PkrI GCNGC 5 cut(s) 205, 567, 667, 1077, 1080
PleI GAGTC 8 cut(s) 274, 377, 568, 1117, 1183, 1403, 1460, 1490
PluTI GGCGCC 1 cut(s) 264
PpsI GAGTC 8 cut(s) 274, 377, 568, 1117, 1183, 1403, 1460, 1490
Psp124BI GAGCTC 1 cut(s) 1370
Psp6I CCWGG 3 cut(s) 696, 732, 1144
PspGI CCWGG 3 cut(s) 696, 732, 1144
PspN4I GGNNCC 4 cut(s) 262, 367, 1012, 1143
PspPI GGNCC 1 cut(s) 730
PspXI VCTCGAGB 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 2 cut(s) 1237, 1258
PvuII CAGCTG 2 cut(s) 302, 668
RsaI GTAC 2 cut(s) 479, 543
RsaNI GTAC 2 cut(s) 478, 542
RseI CAYNNNNRTG 3 cut(s) 447, 1437, 1464
SacI GAGCTC 1 cut(s) 1370
SapI GCTCTTC 1 cut(s) 1375
SatI GCNGC 5 cut(s) 204, 566, 666, 1076, 1079
Sau3AI GATC 4 cut(s) 319, 526, 1237, 1258
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 8 cut(s) 275, 377, 569, 1118, 1184, 1403, 1461, 1491
ScrFI CCNGG 4 cut(s) 698, 734, 824, 1146
SduI GDGCHC 2 cut(s) 368, 1370
SfaNI GCATC 6 cut(s) 158, 628, 715, 736, 1325, 1535
SfcI CTRYAG 1 cut(s) 1060
SfoI GGCGCC 1 cut(s) 262
Sfr274I CTCGAG 1 cut(s) 335
SfuI TTCGAA 1 cut(s) 985
SinI GGWCC 1 cut(s) 730
SlaI CTCGAG 1 cut(s) 335
SmiMI CAYNNNNRTG 3 cut(s) 447, 1437, 1464
SmlI CTYRAG 2 cut(s) 335, 513
SmoI CTYRAG 2 cut(s) 335, 513
Sse9I AATT 2 cut(s) 66, 979
SsiI CCGC 8 cut(s) 201, 204, 290, 374, 728, 940, 1075, 1078
SspDI GGCGCC 1 cut(s) 260
SspMI CTAG 2 cut(s) 791, 1001
SstI GAGCTC 1 cut(s) 1370
StyD4I CCNGG 4 cut(s) 696, 732, 822, 1144
StyI CCWWGG 3 cut(s) 369, 423, 1323
TaaI ACNGT 2 cut(s) 1269, 1420
TaiI ACGT 3 cut(s) 103, 967, 1578
TaqI TCGA 7 cut(s) 12, 89, 224, 336, 985, 1407, 1529
TasI AATT 2 cut(s) 66, 979
TauI GCSGC 3 cut(s) 206, 1078, 1081
TfiI GAWTC 7 cut(s) 572, 599, 1091, 1303, 1349, 1517, 1547
TscAI CASTG 3 cut(s) 470, 913, 1365
TseFI GTSAC 4 cut(s) 908, 1150, 1189, 1453
TseI GCWGC 2 cut(s) 565, 665
Tsp45I GTSAC 4 cut(s) 908, 1150, 1189, 1453
TspGWI ACGGA 3 cut(s) 257, 1023, 1208
TspRI CASTG 3 cut(s) 470, 913, 1365
VpaK11BI GGWCC 1 cut(s) 730
XapI RAATTY 2 cut(s) 66, 979
XbaI TCTAGA 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XhoI CTCGAG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 2 cut(s) 791, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.