FvH4_1g15930

Calmodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017222
Physical Location & Seq
Reverse (-)
9055485 .. 9056018
534 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15930.t1

Sequence Viewer

Length: 534 bp
ATGAGAAAGTCTCGTAACAAACCAGCTCCCCAATTGAGTAATGTCTCCAAAGAGAGACAGAGGTCTAGCGTATCAAGCAGGTCTTCATCCCAGCCAAAAATGGAGGAGATAAGATGGGTGTTTGATAAATTTGACACCAACAAAGATGGGAAGATCAGCCGGGAGGAGTACAAGTCGGTGCTGAAGACCCTCGACAAAGAAATGACAGAAGCTGAGATTGCCAAGACATTCAAGGCCCTTGATTCTGACGGAGACGATTCCATCGGCTGGACGGAGTTTGTGGAAATGTTCAACATGGGAGCTGATGAGGTTAAAAAGGCTGACATTGAAGGCGCTTTTCGGGTGTTTGATTTGGATGGAAATGGGAAGATAAGCGCAGAGGAGTTGTCTCTTATTCTCAAGAAGCTGGGAGAGAATTGCAGCCTTGGAGCTTGTAAGAAAATGGTGAAAGGGGTGGATATTGATGGTGATGGTTTGATAGATTTAAATGAGTTTACCAAAATGATGGGAAGCTTCAAGAAACAGAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

178

Amino Acids

19.85

Weight (kDa)

5.76

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARC_Ca_bdg PF10591 16 - 94 4.8e-07 Secreted protein acidic and rich in cysteine Ca binding region
EF-hand_7 PF13499 35 - 97 1e-16 EF-hand domain pair
EF-hand_1 PF00036 36 - 64 1.5e-08 EF hand domain
EF-hand_6 PF13405 40 - 64 3.8e-06 EF-hand domain
EF-hand_5 PF13202 40 - 60 7.5e-08 EF hand
EF-hand_7 PF13499 107 - 169 6.9e-12 EF-hand domain pair
EF-hand_1 PF00036 109 - 136 2.8e-07 EF hand domain
EF-hand_6 PF13405 109 - 137 6.4e-07 EF-hand domain
EF-hand_5 PF13202 112 - 130 1.1e-06 EF hand
EF-hand_8 PF13833 121 - 169 2e-08 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15930
malus_domestica MD02G1171100.v1.1 MD15G1282600.v1.1
prunus_persica Prupe.7G134500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105321
rosa_multiflora Rmu_sc0001407.1_g000015
rosa_roxburghii Rroxscaffold_2G00138290
rosa_rugosa Rorug02G0127600
rosa_samantha Rh2AG178200 Rh2BG186600 Rh2CG182800 Rh2DG184200
rosa_wichuraiana Rw2G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 267
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 170, 529
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 4 cut(s) 232, 292, 329, 517
AluBI AGCT 6 cut(s) 26, 212, 302, 406, 431, 513
AluI AGCT 6 cut(s) 26, 212, 302, 406, 431, 513
Alw26I GTCTC 5 cut(s) 15, 49, 49, 246, 393
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 2 cut(s) 335, 377
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 457, 479
BbsI GAAGAC 2 cut(s) 75, 191
BbvI GCAGC 1 cut(s) 432
BccI CCATC 7 cut(s) 108, 140, 269, 350, 458, 464, 499
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 5 cut(s) 15, 49, 49, 246, 393
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 1 cut(s) 421
BlsI GCNGC 1 cut(s) 422
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 75, 191
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 2 cut(s) 86, 361
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 3 cut(s) 119, 179, 395
BseXI GCAGC 1 cut(s) 432
BseYI CCCAGC 2 cut(s) 90, 406
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 5 cut(s) 15, 49, 49, 246, 393
BsmBI CGTCTC 1 cut(s) 246
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 86, 361
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 335, 377
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 5 cut(s) 15, 49, 49, 246, 393
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 75, 218
BstPAI GACNNNNGTC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 432
BstV2I GAAGAC 2 cut(s) 75, 191
BstXI CCANNNNNNTGG 1 cut(s) 505
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 86, 361
BveI ACCTGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 2 cut(s) 335, 377
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 169, 528
CviAII CATG 1 cut(s) 295
CviQI GTAC 2 cut(s) 169, 528
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
DraI TTTAAA 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 1 cut(s) 298
FaiI YATR 1 cut(s) 296
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 421
FokI GGATG 2 cut(s) 73, 368
Fsp4HI GCNGC 1 cut(s) 421
FspBI CTAG 1 cut(s) 66
GlaI GCGC 2 cut(s) 334, 376
GluI GCNGC 1 cut(s) 421
GsaI CCCAGC 2 cut(s) 94, 410
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 160
HhaI GCGC 2 cut(s) 335, 377
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 2 cut(s) 333, 375
HinP1I GCGC 2 cut(s) 333, 375
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 2 cut(s) 242, 257
HpaII CCGG 1 cut(s) 160
HphI GGTGA 2 cut(s) 457, 479
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 400, 517
Hpy8I GTNNAC 1 cut(s) 495
HpyAV CCTTC 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 218
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 2 cut(s) 333, 375
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 31, 299, 428
LpnPI CCDG 6 cut(s) 36, 64, 104, 173, 253, 392
Lsp1109I GCAGC 1 cut(s) 432
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 4 cut(s) 75, 163, 196, 379
MfeI CAATTG 1 cut(s) 32
MluCI AATT 3 cut(s) 32, 128, 415
MnlI CCTC 6 cut(s) 54, 97, 157, 200, 301, 373
MseI TTAA 2 cut(s) 312, 485
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 75, 218
NciI CCSGG 1 cut(s) 161
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 298
PfeI GAWTC 2 cut(s) 242, 257
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 1 cut(s) 422
PshAI GACNNNNGTC 1 cut(s) 61
PspFI CCCAGC 2 cut(s) 90, 406
PspPI GGNCC 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 170, 529
RsaNI GTAC 2 cut(s) 169, 528
SaqAI TTAA 2 cut(s) 312, 485
SatI GCNGC 1 cut(s) 421
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 161
SetI ASST 9 cut(s) 28, 65, 83, 214, 304, 312, 408, 433, 515
SmiI ATTTAAAT 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 3 cut(s) 32, 128, 415
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 424
SwaI ATTTAAAT 1 cut(s) 486
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 32, 128, 415
TatI WGTACW 2 cut(s) 168, 527
TfiI GAWTC 2 cut(s) 242, 257
Tru1I TTAA 2 cut(s) 312, 485
Tru9I TTAA 2 cut(s) 312, 485
TseI GCWGC 1 cut(s) 420
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 2 cut(s) 264, 287
Van91I CCANNNNNTGG 1 cut(s) 267
XapI RAATTY 1 cut(s) 128
XspI CTAG 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.