Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g16010 |
| rosa_laevigata | RLG00000017434 |
| rosa_multiflora | Rmu_sc0001942.1_g000028 |
| rosa_samantha | Rh2CG184000 Rh2CG184100 Rh4AG014600 Rh4DG010200 |
| rosa_wichuraiana | Rw2G014060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| Acc16I | TGCGCA | 3 cut(s) | 96, 159, 222 |
| AclWI | GGATC | 1 cut(s) | 462 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 442 |
| AgsI | TTSAA | 3 cut(s) | 41, 107, 242 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 274 |
| AluBI | AGCT | 4 cut(s) | 20, 88, 151, 214 |
| AluI | AGCT | 4 cut(s) | 20, 88, 151, 214 |
| AlwI | GGATC | 1 cut(s) | 462 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 2 cut(s) | 44, 121 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| AspA2I | CCTAGG | 1 cut(s) | 434 |
| AspLEI | GCGC | 3 cut(s) | 97, 160, 223 |
| AsuHPI | GGTGA | 1 cut(s) | 376 |
| AsuNHI | GCTAGC | 2 cut(s) | 143, 206 |
| AvrII | CCTAGG | 1 cut(s) | 434 |
| AxyI | CCTNAGG | 1 cut(s) | 398 |
| BalI | TGGCCA | 1 cut(s) | 290 |
| BbvI | GCAGC | 2 cut(s) | 56, 108 |
| BccI | CCATC | 1 cut(s) | 280 |
| BfaI | CTAG | 4 cut(s) | 144, 207, 356, 435 |
| BisI | GCNGC | 2 cut(s) | 45, 122 |
| BlnI | CCTAGG | 1 cut(s) | 434 |
| BlsI | GCNGC | 2 cut(s) | 46, 123 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 274 |
| BmtI | GCTAGC | 2 cut(s) | 147, 210 |
| BsaJI | CCNNGG | 1 cut(s) | 434 |
| Bse21I | CCTNAGG | 1 cut(s) | 398 |
| Bse3DI | GCAATG | 1 cut(s) | 465 |
| BseDI | CCNNGG | 1 cut(s) | 434 |
| BseGI | GGATG | 2 cut(s) | 183, 338 |
| BseMI | GCAATG | 1 cut(s) | 465 |
| BseXI | GCAGC | 2 cut(s) | 56, 108 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp143I | GATC | 1 cut(s) | 454 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspOI | GCTAGC | 2 cut(s) | 147, 210 |
| BspPI | GGATC | 1 cut(s) | 462 |
| BsrDI | GCAATG | 1 cut(s) | 465 |
| BssECI | CCNNGG | 1 cut(s) | 434 |
| BssMI | GATC | 1 cut(s) | 454 |
| BssT1I | CCWWGG | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 6 cut(s) | 82, 86, 145, 149, 208, 212 |
| BstDEI | CTNAG | 1 cut(s) | 398 |
| BstF5I | GGATG | 2 cut(s) | 183, 338 |
| BstHHI | GCGC | 3 cut(s) | 97, 160, 223 |
| BstKTI | GATC | 1 cut(s) | 457 |
| BstMBI | GATC | 1 cut(s) | 454 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 94, 157, 220 |
| BstV1I | GCAGC | 2 cut(s) | 56, 108 |
| Bsu36I | CCTNAGG | 1 cut(s) | 398 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtsCI | GGATG | 2 cut(s) | 183, 338 |
| BtsI | GCAGTG | 2 cut(s) | 138, 201 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 138, 201 |
| Cac8I | GCNNGC | 6 cut(s) | 82, 86, 145, 149, 208, 212 |
| CfoI | GCGC | 3 cut(s) | 97, 160, 223 |
| Csp6I | GTAC | 1 cut(s) | 441 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 356, 391 |
| CviAII | CATG | 1 cut(s) | 411 |
| CviQI | GTAC | 1 cut(s) | 441 |
| DdeI | CTNAG | 1 cut(s) | 398 |
| DpnI | GATC | 1 cut(s) | 456 |
| DpnII | GATC | 1 cut(s) | 454 |
| DriI | GACNNNNNGTC | 1 cut(s) | 274 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 274 |
| Eco130I | CCWWGG | 1 cut(s) | 434 |
| Eco81I | CCTNAGG | 1 cut(s) | 398 |
| EcoT14I | CCWWGG | 1 cut(s) | 434 |
| ErhI | CCWWGG | 1 cut(s) | 434 |
| FaeI | CATG | 1 cut(s) | 414 |
| FaiI | YATR | 8 cut(s) | 128, 191, 275, 293, 321, 393, 412, 493 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 286, 318 |
| FatI | CATG | 1 cut(s) | 410 |
| Fnu4HI | GCNGC | 2 cut(s) | 45, 122 |
| FokI | GGATG | 2 cut(s) | 170, 345 |
| Fsp4HI | GCNGC | 2 cut(s) | 45, 122 |
| FspBI | CTAG | 4 cut(s) | 144, 207, 356, 435 |
| FspI | TGCGCA | 3 cut(s) | 96, 159, 222 |
| GlaI | GCGC | 3 cut(s) | 96, 159, 222 |
| GluI | GCNGC | 2 cut(s) | 45, 122 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HhaI | GCGC | 3 cut(s) | 97, 160, 223 |
| Hin1II | CATG | 1 cut(s) | 414 |
| Hin6I | GCGC | 3 cut(s) | 95, 158, 221 |
| HinP1I | GCGC | 3 cut(s) | 95, 158, 221 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 5 cut(s) | 9, 69, 165, 254, 403 |
| HphI | GGTGA | 1 cut(s) | 376 |
| Hpy166II | GTNNAC | 1 cut(s) | 28 |
| Hpy188I | TCNGA | 1 cut(s) | 253 |
| Hpy8I | GTNNAC | 1 cut(s) | 28 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 2 cut(s) | 361, 480 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 94, 157, 220 |
| HpyF3I | CTNAG | 1 cut(s) | 398 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 1 cut(s) | 414 |
| HspAI | GCGC | 3 cut(s) | 95, 158, 221 |
| Kzo9I | GATC | 1 cut(s) | 454 |
| LpnPI | CCDG | 5 cut(s) | 94, 98, 161, 224, 456 |
| Lsp1109I | GCAGC | 2 cut(s) | 56, 108 |
| MaeI | CTAG | 4 cut(s) | 144, 207, 356, 435 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 2 cut(s) | 136, 199 |
| MalI | GATC | 1 cut(s) | 456 |
| MboI | GATC | 1 cut(s) | 454 |
| MboII | GAAGA | 1 cut(s) | 295 |
| MlsI | TGGCCA | 1 cut(s) | 290 |
| MluCI | AATT | 2 cut(s) | 102, 428 |
| MluNI | TGGCCA | 1 cut(s) | 290 |
| MlyI | GAGTC | 1 cut(s) | 397 |
| MnlI | CCTC | 6 cut(s) | 58, 121, 184, 219, 323, 476 |
| Mox20I | TGGCCA | 1 cut(s) | 290 |
| MscI | TGGCCA | 1 cut(s) | 290 |
| MslI | CAYNNNNRTG | 1 cut(s) | 188 |
| Msp20I | TGGCCA | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 94, 157, 220 |
| NdeII | GATC | 1 cut(s) | 454 |
| NheI | GCTAGC | 2 cut(s) | 143, 206 |
| NlaIII | CATG | 1 cut(s) | 414 |
| NmuCI | GTSAC | 2 cut(s) | 136, 199 |
| NsbI | TGCGCA | 3 cut(s) | 96, 159, 222 |
| PfeI | GAWTC | 4 cut(s) | 9, 69, 165, 254 |
| PflFI | GACNNNGTC | 1 cut(s) | 350 |
| PkrI | GCNGC | 2 cut(s) | 46, 123 |
| PleI | GAGTC | 1 cut(s) | 397 |
| PpsI | GAGTC | 1 cut(s) | 397 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| PsyI | GACNNNGTC | 1 cut(s) | 350 |
| RsaI | GTAC | 1 cut(s) | 442 |
| RsaNI | GTAC | 1 cut(s) | 441 |
| RseI | CAYNNNNRTG | 1 cut(s) | 188 |
| SatI | GCNGC | 2 cut(s) | 45, 122 |
| Sau3AI | GATC | 1 cut(s) | 454 |
| SchI | GAGTC | 1 cut(s) | 397 |
| SetI | ASST | 9 cut(s) | 22, 27, 90, 113, 153, 176, 216, 377, 399 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 188 |
| Sse9I | AATT | 2 cut(s) | 102, 428 |
| SspI | AATATT | 1 cut(s) | 238 |
| SspMI | CTAG | 4 cut(s) | 144, 207, 356, 435 |
| StyI | CCWWGG | 1 cut(s) | 434 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TaqI | TCGA | 1 cut(s) | 168 |
| TasI | AATT | 2 cut(s) | 102, 428 |
| TfiI | GAWTC | 4 cut(s) | 9, 69, 165, 254 |
| TscAI | CASTG | 3 cut(s) | 19, 145, 208 |
| TseFI | GTSAC | 2 cut(s) | 136, 199 |
| TseI | GCWGC | 2 cut(s) | 44, 121 |
| Tsp45I | GTSAC | 2 cut(s) | 136, 199 |
| TspDTI | ATGAA | 2 cut(s) | 17, 61 |
| TspRI | CASTG | 3 cut(s) | 19, 145, 208 |
| Tth111I | GACNNNGTC | 1 cut(s) | 350 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XmaJI | CCTAGG | 1 cut(s) | 434 |
| XspI | CTAG | 4 cut(s) | 144, 207, 356, 435 |