RLG00000017434

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019194
Physical Location & Seq
Reverse (-)
16706717 .. 16707828
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017434

Sequence Viewer

Length: 585 bp
ATGTTTGTATTGCTCACTGGAAATCTAATTGTCGGAACATCAATATCGTCATGGGTCCTTTTCCTATTGCCACCATTGAATGTCGCAATTGGGGATAACGAGACTATACATTTTCAAAGCGGCGATGGCATTTTCTTGTCAGGCTTTTTGCACTGGATGCTTGCCCGTAACAATGAAGGCATGCTGTGCTATGATCTGGCAAATCAAAGATTTACAGTGCAAGCATATCCAGAGCCTCCACTTTTGCAGAATGATAATCAAATTTCGGCTGGAGTTCATGATCAATCACTTTCTTTTCTCAGTTGGAGGCAGCAAAATGGTCATTTTACTTGTCTAGTCCACATCAAGCAAAGAAACGAGGAAGACCAAGAGCAGTGGACACTCATTTACAGCCTCGACCTTGAAAGTCCTTTTGCAATTTCTCTGCCACCGGCCTGCACACCAAAAGGTGGATATCTCATAGGAATTGAACGTGATGGTACACAAGACAGGAGTCTGCTTATTTTTGATCCAGCTACAAATCAAGGGGTAACCTTTGATATTGACCTGCCACATGACGATGATGAATTCTATGTTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.89

Weight (kDa)

4.32

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019194)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16010
rosa_laevigata RLG00000017434
rosa_multiflora Rmu_sc0001942.1_g000028
rosa_samantha Rh2CG184000 Rh2CG184100 Rh4AG014600 Rh4DG010200
rosa_wichuraiana Rw2G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 555
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 2 cut(s) 261, 566
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 4 cut(s) 79, 116, 404, 470
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 503
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 261, 566
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 322
BccI CCATC 2 cut(s) 119, 470
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 555
BisI GCNGC 2 cut(s) 121, 311
BlsI GCNGC 2 cut(s) 122, 312
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 147
BoxI GACNNNNGTC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 22, 158
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 2 cut(s) 22, 158
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 421
BshFI GGCC 1 cut(s) 434
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 1 cut(s) 434
Bsp143I GATC 3 cut(s) 193, 280, 508
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 22, 158
BssAI RCCGGY 1 cut(s) 430
BssMI GATC 3 cut(s) 193, 280, 508
Bst4CI ACNGT 1 cut(s) 217
BstAPI GCANNNNNTGC 2 cut(s) 157, 186
BstC8I GCNNGC 4 cut(s) 162, 182, 222, 436
BstDEI CTNAG 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 529
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 3 cut(s) 196, 283, 511
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 193, 280, 508
BstMWI GCNNNNNNNGC 3 cut(s) 126, 157, 186
BstNSI RCATGY 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 492
BstPI GGTNACC 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 4 cut(s) 15, 151, 222, 380
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 4 cut(s) 162, 182, 222, 436
CciI TCATGA 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 480
CspCI CAANNNNNGTGG 2 cut(s) 356, 391
CviAII CATG 4 cut(s) 51, 181, 278, 554
CviJI RGCY 6 cut(s) 144, 235, 269, 393, 434, 515
CviKI_1 RGCY 6 cut(s) 144, 235, 269, 393, 434, 515
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 299
DpnI GATC 3 cut(s) 195, 282, 510
DpnII GATC 3 cut(s) 193, 280, 508
Eco32I GATATC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 55
Eco91I GGTNACC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 566
EcoRV GATATC 1 cut(s) 455
FaeI CATG 4 cut(s) 54, 184, 281, 557
FaiI YATR 9 cut(s) 52, 107, 182, 192, 226, 279, 461, 555, 573
FatI CATG 4 cut(s) 50, 180, 277, 553
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 121, 311
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 121, 311
FspBI CTAG 1 cut(s) 335
GluI GCNGC 2 cut(s) 121, 311
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 434
HapII CCGG 1 cut(s) 431
Hin1II CATG 4 cut(s) 54, 184, 281, 557
HinfI GANTC 1 cut(s) 493
HpaII CCGG 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 340, 378, 482
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 230, 278
Hpy8I GTNNAC 3 cut(s) 340, 378, 482
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 5 cut(s) 151, 220, 247, 416, 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 157, 186
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 4 cut(s) 54, 184, 281, 557
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 193, 280, 508
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 2 cut(s) 167, 529
MalI GATC 3 cut(s) 195, 282, 510
MboI GATC 3 cut(s) 193, 280, 508
MboII GAAGA 1 cut(s) 374
MfeI CAATTG 1 cut(s) 87
MluCI AATT 6 cut(s) 27, 87, 261, 417, 465, 566
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 13, 284
MnlI CCTC 4 cut(s) 246, 300, 352, 404
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 126, 157, 186
NdeII GATC 3 cut(s) 193, 280, 508
NlaIII CATG 4 cut(s) 54, 184, 281, 557
NlaIV GGNNCC 1 cut(s) 56
NspI RCATGY 1 cut(s) 184
PaeI GCATGC 1 cut(s) 184
PagI TCATGA 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 2 cut(s) 122, 312
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PpuMI RGGWCCY 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 529
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 558
SatI GCNGC 2 cut(s) 121, 311
Sau3AI GATC 3 cut(s) 193, 280, 508
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 502
SetI ASST 6 cut(s) 402, 451, 475, 517, 536, 549
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 558
SphI GCATGC 1 cut(s) 184
Sse9I AATT 6 cut(s) 27, 87, 261, 417, 465, 566
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 396
TasI AATT 6 cut(s) 27, 87, 261, 417, 465, 566
TauI GCSGC 1 cut(s) 123
TscAI CASTG 4 cut(s) 22, 158, 222, 380
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 189, 266, 579
TspRI CASTG 4 cut(s) 22, 158, 222, 380
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 261, 566
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.