Rh4DG010200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019194
Physical Location & Seq
Forward (+)
1521431 .. 1522033
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG010200.1

Sequence Viewer

Length: 564 bp
ATGATGAATCCTTTGTATGAAGTCGAAGAGTATAGTCTGAGGTCTAATGTTTGGACAAGGTTGCCGCCACTGAATGTCGCACTTGGTGATAATGAAACCATACTTTTTCAAAGCGGCGATGGCATTTACTTGTCAGGCTTTGTGTACTGGATGCTTGCCCGTAACAATGAAGGCATGCTGTGTTATGATCTGGCAGATCAAAGATTTACAGTGCAAGCATATCCAGAGCCTCCAATTTTTCAGAATGATCATCAAATTTCGGCTGGACAAGATGGTCATTTTATTTGTCAAGTCCACACCAAGCAGAAAAACGAGGAAGACCAAGAGCAGTGGATACTCATTTACAGCGTTGACCTTCAAAGTCCTTTTGCAATATATCGGCCACTGGCCTACACACCAAAAGGTGGATATCTCATAGGAATTGAACGTGATGGTACAGAGGACAGGAGTCTGCTCATTCTTGATCCAGCTACAAACGAAGAGGTAACTTTTGATATTGACCTGCTACATAAGGATGATGAATTCTATGTTGATGAGTATACCGAGAATTTGCAGTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.7

Weight (kDa)

4.2

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019194)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16010
rosa_laevigata RLG00000017434
rosa_multiflora Rmu_sc0001942.1_g000028
rosa_samantha Rh2CG184000 Rh2CG184100 Rh4AG014600 Rh4DG010200
rosa_wichuraiana Rw2G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 510
AccB7I CCANNNNNTGG 1 cut(s) 404
AccI GTMKAC 1 cut(s) 539
AciI CCGC 2 cut(s) 65, 114
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 3 cut(s) 255, 521, 547
AdeI CACNNNGTG 1 cut(s) 86
AfaI GTAC 2 cut(s) 146, 436
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 3 cut(s) 110, 359, 425
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
AlwI GGATC 1 cut(s) 458
AlwNI CAGNNNCTG 1 cut(s) 559
AoxI GGCC 2 cut(s) 380, 387
ApoI RAATTY 3 cut(s) 255, 521, 547
AsuHPI GGTGA 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 324
BccI CCATC 3 cut(s) 113, 266, 425
BciVI GTATCC 1 cut(s) 327
BclI TGATCA 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 510
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 2 cut(s) 65, 115
BlsI GCNGC 2 cut(s) 66, 116
BmsI GCATC 1 cut(s) 141
BoxI GACNNNNGTC 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 152, 390
BseGI GGATG 2 cut(s) 156, 520
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 152, 390
BshFI GGCC 2 cut(s) 382, 389
BslI CCNNNNNNNGG 1 cut(s) 404
BsnI GGCC 2 cut(s) 382, 389
Bsp143I GATC 4 cut(s) 187, 196, 247, 463
BspACI CCGC 2 cut(s) 65, 114
BspANI GGCC 2 cut(s) 382, 389
BspCNI CTCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 510
BspPI GGATC 1 cut(s) 458
BsrI ACTGG 2 cut(s) 152, 390
BssMI GATC 4 cut(s) 187, 196, 247, 463
BssNAI GTATAC 1 cut(s) 540
Bst1107I GTATAC 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 211, 561
Bst6I CTCTTC 2 cut(s) 21, 474
BstC8I GCNNGC 3 cut(s) 156, 176, 216
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 156, 520
BstKTI GATC 4 cut(s) 190, 199, 250, 466
BstMBI GATC 4 cut(s) 187, 196, 247, 463
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 178
BstPAI GACNNNNGTC 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 560
BstV2I GAAGAC 1 cut(s) 324
BstZ17I GTATAC 1 cut(s) 540
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 382, 389
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 156, 520
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 4 cut(s) 68, 216, 335, 383
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 156, 176, 216
CaiI CAGNNNCTG 1 cut(s) 559
Csp6I GTAC 2 cut(s) 145, 435
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 1 cut(s) 175
CviJI RGCY 6 cut(s) 138, 229, 263, 382, 389, 470
CviKI_1 RGCY 6 cut(s) 138, 229, 263, 382, 389, 470
CviQI GTAC 2 cut(s) 145, 435
DdeI CTNAG 1 cut(s) 38
DpnI GATC 4 cut(s) 189, 198, 249, 465
DpnII GATC 4 cut(s) 187, 196, 247, 463
DraIII CACNNNGTG 1 cut(s) 86
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 21, 474
EarI CTCTTC 2 cut(s) 21, 474
Eco32I GATATC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 521
EcoRV GATATC 1 cut(s) 410
FaeI CATG 1 cut(s) 178
FatI CATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 2 cut(s) 65, 115
FokI GGATG 2 cut(s) 163, 527
Fsp4HI GCNGC 2 cut(s) 65, 115
GluI GCNGC 2 cut(s) 65, 115
HaeIII GGCC 2 cut(s) 382, 389
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 7, 448
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 4 cut(s) 145, 295, 352, 540
Hpy188I TCNGA 2 cut(s) 39, 243
Hpy188III TCNNGA 2 cut(s) 224, 461
Hpy8I GTNNAC 4 cut(s) 145, 295, 352, 540
HpyAV CCTTC 2 cut(s) 164, 365
HpyCH4III ACNGT 2 cut(s) 211, 561
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 3 cut(s) 214, 371, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 187, 196, 247, 463
LpnPI CCDG 9 cut(s) 120, 133, 176, 237, 249, 371, 430, 480, 515
LweI GCATC 1 cut(s) 141
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 3 cut(s) 161, 484, 555
MalI GATC 4 cut(s) 189, 198, 249, 465
MboI GATC 4 cut(s) 187, 196, 247, 463
MboII GAAGA 3 cut(s) 38, 329, 491
MluCI AATT 5 cut(s) 234, 255, 420, 521, 547
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 5 cut(s) 33, 240, 307, 433, 475
MslI CAYNNNNRTG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 4 cut(s) 187, 196, 247, 463
NlaIII CATG 1 cut(s) 178
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 2 cut(s) 66, 116
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
PshAI GACNNNNGTC 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 559
RsaI GTAC 2 cut(s) 146, 436
RsaNI GTAC 2 cut(s) 145, 435
RseI CAYNNNNRTG 1 cut(s) 513
SatI GCNGC 2 cut(s) 65, 115
Sau3AI GATC 4 cut(s) 187, 196, 247, 463
SchI GAGTC 1 cut(s) 457
SetI ASST 8 cut(s) 44, 62, 357, 406, 430, 472, 486, 504
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 513
SphI GCATGC 1 cut(s) 178
Sse9I AATT 5 cut(s) 234, 255, 420, 521, 547
SsiI CCGC 2 cut(s) 65, 114
TaaI ACNGT 2 cut(s) 211, 561
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 24
TasI AATT 5 cut(s) 234, 255, 420, 521, 547
TatI WGTACW 1 cut(s) 144
TauI GCSGC 2 cut(s) 67, 117
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 4 cut(s) 75, 216, 335, 390
TspDTI ATGAA 5 cut(s) 20, 33, 108, 183, 534
TspRI CASTG 4 cut(s) 75, 216, 335, 390
Van91I CCANNNNNTGG 1 cut(s) 404
XapI RAATTY 3 cut(s) 255, 521, 547
XceI RCATGY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.