Rw2G014060

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
15487552 .. 15489631
2080 bp
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UTR
Exon/CDS
Intron
Rw2G014060.1

Sequence Viewer

Length: 342 bp
ATGGTCGGTTTCTCATTTTCTTTGAATTGCTATATTGAGATGTGGGAATCCATATTCCTACATGCCAAATTGTCTGTGAAATCCCTAGTGCAGTTAAGTTGTTTTCGCATAGTATGGCGTTTGACAATTTTCTCCCCAACATTTATCAAGGCATACGATGAAAGTAATAGTGGCAAGACTGGTTTATTGCTTTTTCAGACTCAACTGAAGTTGATTTACTGGCTGTTCTCGACTGATATCAATAACTGGGTTTCCTTTATAAACTGTCCTTTGGAGATTCGGGGCCTTTCAATCGTTGGCTCTTGCAGGGACTCCTATGTTTCAGTGAACCCTATGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.98

Weight (kDa)

8.41

Isoelectric Point (pI)

23.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019194)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16010
rosa_laevigata RLG00000017434
rosa_multiflora Rmu_sc0001942.1_g000028
rosa_samantha Rh2CG184000 Rh2CG184100 Rh4AG014600 Rh4DG010200
rosa_wichuraiana Rw2G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 25, 291
AoxI GGCC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BfaI CTAG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 284
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
Bse1I ACTGG 3 cut(s) 184, 224, 251
BseNI ACTGG 3 cut(s) 184, 224, 251
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 285
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 284
BsrI ACTGG 3 cut(s) 184, 224, 251
Bst4CI ACNGT 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 283
CviAII CATG 1 cut(s) 62
CviJI RGCY 3 cut(s) 223, 285, 300
CviKI_1 RGCY 3 cut(s) 223, 285, 300
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 283
EcoRV GATATC 1 cut(s) 238
FaeI CATG 1 cut(s) 65
FaiI YATR 9 cut(s) 33, 53, 63, 110, 115, 154, 260, 318, 335
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 61
FspBI CTAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 1 cut(s) 65
HinfI GANTC 4 cut(s) 47, 199, 277, 311
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 91, 306
Hsp92II CATG 1 cut(s) 65
LpnPI CCDG 4 cut(s) 165, 205, 232, 292
MaeI CTAG 1 cut(s) 86
MluCI AATT 3 cut(s) 25, 68, 126
MlyI GAGTC 2 cut(s) 193, 305
MseI TTAA 1 cut(s) 95
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 284
NspI RCATGY 1 cut(s) 65
PfeI GAWTC 2 cut(s) 47, 277
PleI GAGTC 2 cut(s) 193, 305
PpsI GAGTC 2 cut(s) 193, 305
PsiI TTATAA 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 95
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 2 cut(s) 193, 305
Sse9I AATT 3 cut(s) 25, 68, 126
SspMI CTAG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 230
TasI AATT 3 cut(s) 25, 68, 126
TfiI GAWTC 2 cut(s) 47, 277
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 330
XceI RCATGY 1 cut(s) 65
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.