FvH4_1g16720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016196
Physical Location & Seq
Reverse (-)
9677005 .. 9677744
740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16720.t1

Sequence Viewer

Length: 249 bp
ATGAATGCACAGGCCATCAAGGAACTCAAGACAAGGAATGAAGAAGCAAGTGCTAAAGAGACAAAGGTGAACACAGTAGATAATCGATCATCGGCGGGACAAGGCCAAGAACATAGGAATGTGCAGGTGGTTCACCAGTCACATCCCTCGCCGATTCCAAATACGAGCGGGGGAGTCCTGACCGGTGCTGCGGCAGCTGTGGCATCTACCCTTAAGTCTGCCAAGGAGGCCATCTTAAAAAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.59

Weight (kDa)

9.22

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67265
fragaria_vesca FvH4_1g16720
malus_domestica MD02G1178400.v1.1
prunus_persica Prupe.6G229400_v2.0.a1
rosa_laevigata RLG00000017524
rosa_multiflora Rmu_co8325987.1_g000001
rosa_rugosa Rorug02G0136900
rosa_samantha Rh2AG188200 Rh2AG188300 Rh2BG199200 Rh2BG199300 Rh2CG193300 Rh2DG194400 Rh2DG194500
rosa_wichuraiana Rw2G014780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 115
Acc36I ACCTGC 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 3 cut(s) 95, 168, 191
AflII CTTAAG 1 cut(s) 212
AgeI ACCGGT 1 cut(s) 182
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 3 cut(s) 12, 103, 228
ApeKI GCWGC 2 cut(s) 188, 194
AsiGI ACCGGT 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 79, 125
BbvI GCAGC 2 cut(s) 175, 206
BccI CCATC 2 cut(s) 23, 239
BcoDI GTCTC 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 3 cut(s) 189, 192, 195
BlsI GCNGC 3 cut(s) 190, 193, 196
BmsI GCATC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 175, 206
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 3 cut(s) 14, 105, 230
BshTI ACCGGT 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 85
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 3 cut(s) 14, 105, 230
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 3 cut(s) 95, 168, 191
BspANI GGCC 3 cut(s) 14, 105, 230
BspDI ATCGAT 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 194, 200, 227
BstV1I GCAGC 2 cut(s) 175, 206
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 3 cut(s) 14, 105, 230
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 85
CspAI ACCGGT 1 cut(s) 182
CviJI RGCY 4 cut(s) 14, 105, 197, 230
CviKI_1 RGCY 4 cut(s) 14, 105, 197, 230
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaiI YATR 1 cut(s) 114
FaqI GGGAC 1 cut(s) 111
FauI CCCGC 2 cut(s) 88, 161
Fnu4HI GCNGC 3 cut(s) 189, 192, 195
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 189, 192, 195
GluI GCNGC 3 cut(s) 189, 192, 195
HaeIII GGCC 3 cut(s) 14, 105, 230
HapII CCGG 1 cut(s) 183
HinfI GANTC 2 cut(s) 154, 174
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 79, 125
Hpy166II GTNNAC 2 cut(s) 70, 133
Hpy188III TCNNGA 2 cut(s) 28, 178
Hpy8I GTNNAC 2 cut(s) 70, 133
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 8, 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 200, 227
Kzo9I GATC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 110, 149, 191, 196
Lsp1109I GCAGC 2 cut(s) 175, 206
LweI GCATC 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 138
MalI GATC 1 cut(s) 88
MbiI CCGCTC 1 cut(s) 168
MboI GATC 1 cut(s) 86
MboII GAAGA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 2 cut(s) 157, 220
MseI TTAA 2 cut(s) 213, 236
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 194, 200, 227
NdeII GATC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 115
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 3 cut(s) 190, 193, 196
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 213, 236
SatI GCNGC 3 cut(s) 189, 192, 195
Sau3AI GATC 1 cut(s) 86
SchI GAGTC 1 cut(s) 183
SetI ASST 3 cut(s) 69, 129, 199
SfaNI GCATC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 26, 212
SmoI CTYRAG 2 cut(s) 26, 212
SsiI CCGC 3 cut(s) 95, 168, 191
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 85
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 213, 236
Tru9I TTAA 2 cut(s) 213, 236
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 2 cut(s) 188, 194
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 17, 54
Vha464I CTTAAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.