Rh2BG199300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016196
Physical Location & Seq
Reverse (-)
18292436 .. 18292804
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG199300.1

Sequence Viewer

Length: 369 bp
ATGCTACCGGGCCAAGCACGAACTAGCAAAAGGGTTACAGGAAGAGAGTTAAGAGACCATGGAGAAACAGAAGAAGTCCTCCAAACTCCTGTTTTCGGTGTCTTACGCCCAAAGGGCCCGGAACGGAAATCCGACCATAAGGGAAAGGATACTTTTAGCTGCTTGGTTTCCATTTGCTTCTCTCTATATCCAAGACAGAGTCCACACTTCTACAGTCCATCTCAAACATGTGAGTTTCACAAGAGCATGCAGTGTGGTTCCTTGTTTTGGGATGAGAGTTTTCGTGTCTATTTAGAAATTTCCTTACCAAGAATCTGCAGAGCTTTTGATGACTTTCACTTGGCAAGAGTTTTTTTTTTTTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.26

Weight (kDa)

8.68

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67265
fragaria_vesca FvH4_1g16720
malus_domestica MD02G1178400.v1.1
prunus_persica Prupe.6G229400_v2.0.a1
rosa_laevigata RLG00000017524
rosa_multiflora Rmu_co8325987.1_g000001
rosa_rugosa Rorug02G0136900
rosa_samantha Rh2AG188200 Rh2AG188300 Rh2BG199200 Rh2BG199300 Rh2CG193300 Rh2DG194400 Rh2DG194500
rosa_wichuraiana Rw2G014780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 95, 267
AflIII ACRYGT 1 cut(s) 227
AluBI AGCT 2 cut(s) 159, 323
AluI AGCT 2 cut(s) 159, 323
Alw26I GTCTC 1 cut(s) 48
AoxI GGCC 2 cut(s) 10, 115
ApaI GGGCCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 297
AspS9I GGNCC 3 cut(s) 10, 115, 116
AsuC2I CCSGG 2 cut(s) 9, 119
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 226
BciVI GTATCC 1 cut(s) 142
BcnI CCSGG 2 cut(s) 9, 119
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 211, 316
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 9, 119
BmgT120I GGNCC 3 cut(s) 10, 115, 116
BmiI GGNNCC 2 cut(s) 117, 259
BmrFI CCNGG 2 cut(s) 9, 119
BpuMI CCSGG 2 cut(s) 9, 119
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 267
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 95, 267
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 12, 117
BsiSI CCGG 2 cut(s) 8, 119
BslI CCNNNNNNNGG 2 cut(s) 95, 267
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 2 cut(s) 12, 117
Bso31I GGTCTC 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 58
BspANI GGCC 2 cut(s) 12, 117
BspLI GGNNCC 2 cut(s) 117, 259
BspMAI CTGCAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 231, 250
BstSCI CCNGG 2 cut(s) 7, 117
BstSFI CTRYAG 2 cut(s) 211, 316
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 12, 117
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 10, 115, 116
CviAII CATG 3 cut(s) 59, 228, 247
CviJI RGCY 4 cut(s) 12, 117, 159, 323
CviKI_1 RGCY 4 cut(s) 12, 117, 159, 323
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 62, 231, 250
FaiI YATR 5 cut(s) 60, 138, 187, 229, 248
FatI CATG 3 cut(s) 58, 227, 246
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 12, 117
HapII CCGG 2 cut(s) 8, 119
Hin1II CATG 3 cut(s) 62, 231, 250
HinfI GANTC 2 cut(s) 199, 312
HpaII CCGG 2 cut(s) 8, 119
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 250, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 62, 231, 250
LpnPI CCDG 4 cut(s) 21, 24, 102, 132
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 2 cut(s) 54, 83
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 1 cut(s) 89
MseI TTAA 1 cut(s) 50
MspI CCGG 2 cut(s) 8, 119
MspR9I CCNGG 2 cut(s) 9, 119
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 2 cut(s) 9, 119
NcoI CCATGG 1 cut(s) 58
NlaIII CATG 3 cut(s) 62, 231, 250
NlaIV GGNNCC 2 cut(s) 117, 259
NspI RCATGY 2 cut(s) 231, 250
PaeI GCATGC 1 cut(s) 250
PciI ACATGT 1 cut(s) 227
PfeI GAWTC 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PscI ACATGT 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 117, 259
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 3 cut(s) 10, 115, 116
PstI CTGCAG 1 cut(s) 320
PsyI GACNNNGTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 160
Sau96I GGNCC 3 cut(s) 10, 115, 116
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 9, 119
SduI GDGCHC 1 cut(s) 119
SetI ASST 2 cut(s) 161, 325
SfcI CTRYAG 2 cut(s) 211, 316
SphI GCATGC 1 cut(s) 250
Sse9I AATT 1 cut(s) 297
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 7, 117
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 215
TasI AATT 1 cut(s) 297
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 257
TseI GCWGC 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 198
XapI RAATTY 1 cut(s) 297
XceI RCATGY 2 cut(s) 231, 250
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.