RLG00000017524

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016196
Physical Location & Seq
Reverse (-)
17834660 .. 17836042
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017524

Sequence Viewer

Length: 549 bp
ATGGGGATTCCAAAGTATGCCGGAAGAGAGTACACTTGTACAGTGCTCAGCCAACATGTGAAAAGGGAGGAGGACAGTGCCTTCATTGGCCAAGCAAGAACTAGCAAAAGGGTTACAGGACGAGAGTTGAGAGACCATGGAGAAACAGAAGAAGTCCTCCAAACTCCTGTTTTCGGTGTCTTACGCCCAAAGGGCCAGGAACGGAAATCCGACCATAAGGGAAAGGATACTTTTAGCTGCTTGGTTTCCATTTGCTTCTCTCTATATCCAAGACAGAGATGCTCTCTGTTGTTCCACACTTCTACAGTCCATCTCAAACATGAAATCAAGGCAAGGAATGAAGAAGCAAATGTTAAAGAGACAAAGGTGAACACAGTAGATAATCAGTCATCGGCGGGGCAAGGCCAAGAACAGAGGAATGTGCAGGTGGTTCACCAGTCACACCCCTCGCCCATTACAAATACGAGCGGGGGAGTTCTGACCGGTGCTGCCGCAGCTGTGGCATCCACTCTTCGGTCTGCCAAGGAGGCCATTTCAAAAATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.04

Weight (kDa)

9.25

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67265
fragaria_vesca FvH4_1g16720
malus_domestica MD02G1178400.v1.1
prunus_persica Prupe.6G229400_v2.0.a1
rosa_laevigata RLG00000017524
rosa_multiflora Rmu_co8325987.1_g000001
rosa_rugosa Rorug02G0136900
rosa_samantha Rh2AG188200 Rh2AG188300 Rh2BG199200 Rh2BG199300 Rh2CG193300 Rh2DG194400 Rh2DG194500
rosa_wichuraiana Rw2G014780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 415
Acc36I ACCTGC 1 cut(s) 415
AccBSI CCGCTC 1 cut(s) 468
AciI CCGC 3 cut(s) 395, 468, 492
AcoI YGGCCR 1 cut(s) 88
AfaI GTAC 2 cut(s) 32, 40
AfiI CCNNNNNNNGG 2 cut(s) 173, 513
AflIII ACRYGT 1 cut(s) 55
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 1 cut(s) 537
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 237, 497
AluI AGCT 2 cut(s) 237, 497
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 126, 353
AoxI GGCC 4 cut(s) 88, 193, 403, 528
ApeKI GCWGC 3 cut(s) 237, 488, 494
AsiGI ACCGGT 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 379, 425
BalI TGGCCA 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 224, 475, 506
BccI CCATC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 126, 353
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 415
BfuI GTATCC 1 cut(s) 220
BglI GCCNNNNNGGC 2 cut(s) 192, 527
BisI GCNGC 4 cut(s) 238, 489, 492, 495
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 4 cut(s) 239, 490, 493, 496
Bme1390I CCNGG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 269, 512
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bpu1102I GCTNAGC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 136, 522
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 513
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 136, 522
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 2 cut(s) 173, 513
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 224, 475, 506
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 4 cut(s) 90, 195, 405, 530
BshTI ACCGGT 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 21, 483
BslI CCNNNNNNNGG 2 cut(s) 173, 513
BsmAI GTCTC 2 cut(s) 126, 353
BsnI GGCC 4 cut(s) 90, 195, 405, 530
Bso31I GGTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 47
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 3 cut(s) 395, 468, 492
BspANI GGCC 4 cut(s) 90, 195, 405, 530
BspCNI CTCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 38
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 136, 522
BssT1I CCWWGG 2 cut(s) 136, 522
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 4 cut(s) 43, 77, 307, 376
Bst6I CTCTTC 2 cut(s) 19, 516
BstAUI TGTACA 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 503
BstMAI GTCTC 2 cut(s) 126, 353
BstMWI GCNNNNNNNGC 4 cut(s) 192, 494, 500, 527
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 224, 475, 506
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 4 cut(s) 90, 195, 405, 530
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 48, 82
BveI ACCTGC 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 31, 39
CspAI ACCGGT 1 cut(s) 482
CviAII CATG 3 cut(s) 56, 137, 320
CviJI RGCY 7 cut(s) 51, 90, 195, 237, 405, 497, 530
CviKI_1 RGCY 7 cut(s) 51, 90, 195, 237, 405, 497, 530
CviQI GTAC 2 cut(s) 31, 39
DdeI CTNAG 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 19, 516
EarI CTCTTC 2 cut(s) 19, 516
Eco130I CCWWGG 2 cut(s) 136, 522
Eco31I GGTCTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 2 cut(s) 136, 522
ErhI CCWWGG 2 cut(s) 136, 522
FaeI CATG 3 cut(s) 59, 140, 323
FaiI YATR 6 cut(s) 18, 57, 138, 216, 265, 321
FatI CATG 3 cut(s) 55, 136, 319
FauI CCCGC 2 cut(s) 388, 461
Fnu4HI GCNGC 4 cut(s) 238, 489, 492, 495
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 4 cut(s) 238, 489, 492, 495
FspBI CTAG 1 cut(s) 102
GluI GCNGC 4 cut(s) 238, 489, 492, 495
HaeIII GGCC 4 cut(s) 90, 195, 405, 530
HapII CCGG 2 cut(s) 21, 483
Hin1II CATG 3 cut(s) 59, 140, 323
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 21, 483
HphI GGTGA 2 cut(s) 379, 425
Hpy166II GTNNAC 3 cut(s) 33, 370, 433
Hpy188I TCNGA 2 cut(s) 211, 480
Hpy8I GTNNAC 3 cut(s) 33, 370, 433
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 4 cut(s) 43, 77, 307, 376
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 494, 500, 527
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 3 cut(s) 59, 140, 323
LpnPI CCDG 8 cut(s) 34, 102, 180, 182, 209, 410, 449, 496
Lsp1109I GCAGC 3 cut(s) 224, 475, 506
LweI GCATC 2 cut(s) 269, 512
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 112, 438
MbiI CCGCTC 1 cut(s) 468
MboII GAAGA 4 cut(s) 36, 161, 353, 503
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 1 cut(s) 540
MluNI TGGCCA 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 6 cut(s) 61, 64, 167, 408, 457, 520
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 21, 483
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 4 cut(s) 192, 494, 500, 527
NcoI CCATGG 1 cut(s) 136
NlaIII CATG 3 cut(s) 59, 140, 323
NmuCI GTSAC 1 cut(s) 438
NspI RCATGY 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 415
PciI ACATGT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 482
PkrI GCNGC 4 cut(s) 239, 490, 493, 496
PscI ACATGT 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 32, 40
RsaNI GTAC 2 cut(s) 31, 39
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 4 cut(s) 238, 489, 492, 495
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 239, 369, 429, 499
SfaNI GCATC 2 cut(s) 269, 512
SfcI CTRYAG 1 cut(s) 303
Sse9I AATT 1 cut(s) 540
SsiI CCGC 3 cut(s) 395, 468, 492
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 136, 522
TaaI ACNGT 4 cut(s) 43, 77, 307, 376
TaqII GACCGA 1 cut(s) 504
TasI AATT 1 cut(s) 540
TatI WGTACW 2 cut(s) 30, 38
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 48, 82
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 3 cut(s) 237, 488, 494
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 3 cut(s) 73, 336, 354
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 2 cut(s) 48, 82
XceI RCATGY 1 cut(s) 59
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.