FvH4_1g19590

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010966
Physical Location & Seq
Reverse (-)
11831502 .. 11837847
6346 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19590.t2

Sequence Viewer

Length: 1500 bp
ATGGGTGGAACAGATAAGGATACTGCCACAGTGATCTCGACAATGCTGCTTGTTTCTGGAATCACAACCATATTGCACTCTTACTTTGGAACCCGGCTTCCATTAGTTCAAGGAAGTTCGTTTGTATATTTGGCACCAGCATTAGTTATCATAAATGCTCAAGAATATCGGAATCTCACAGAACATAAGTTTAGGCATATAATGAGAGAACTGCAAGGAGCTATAATTGTTGGTTCGATATTTCAAAGCATCCTGGGATTTAGTGGGTTAATGTCTTTATTGCTGAGGTTGATAAACCCTATCGTCGTTGCACCAACTGTTGCTGCTGTAGGTTTGGCATTTTTGAGTTATGGCTTTCCTCAAGCTGGTAGTTGTGTGGAAATCAGCATTCCACAGATACTTTTGGTTCTTATATTCACCTTGTACCTTCGAGGGGTATCCATCTTTGGGCATCGTCTTTTCCGGATTTATGCGGTTCCCTTGAGCATAGTGATCATATGGACTTATGCATTCTTTTTGACAGCCGGTGGAGCATATGATTACAAAGGCTGCACCTCTGATATACCTAGTTCAAATATCTTAATAGATGCTTGTAGAAGACATGCATATACTATGAAACATTGTAGGACCGATGTTTCAAATGCATGGAGAACTGCTGCATGGGTCAGGATTCCCTACCCTCTGCAATGGGGTATCCCTATCTTCCATTTCAGGACTTCCATTATCATGATCTTTGTGTCTCTTGTTGCATCAGTTGATTCGGTTGGAACATATCACTCTGCATCTATGCAAATTAATCTGAAGGCTCCAACCCGAGGAATTGTCAGCAGAGGAATTGCATTGGAGGGATTCTGCAGTATATTGGCAGGACTTTGGGGTTCAGGTACTGGGTCAACAACCTTGACAGAAAATATTCATACAATCAACATAACAAAAGTGGCAAGCCGAAGAGTTGTGGAGCTTGGAGCAGTTTTCTTAATCTTCTTCTCATTCGTAGGAAAAGTGGGTGCCATTCTTGCCTCTATACCACTGGCCTTGGCTGCTTCCGTACTCTGCTTCACATGGGCCCTTGTTGTGGCATTGGGTCTCTCAACATTGCAGTATAGTCGAGCAGCAAGTTTTAGAAACATGATGATAGTTGGCGTTTCATTGTTTCTTGGTTTATCTATTCCTGCATATTTTCAACAGTATCAACCAGAATCCAGCTTCATACTCCCTAGCTACTTCATTCCTTATGCAGCAGCATCTAATGGACCAGCCCGCACCGGTAGTAAACAGCTTGACTTTGCTATAAATGCACTTATGTCTTTGAACATGGTGGTGACACTCATGGTGGCATTGGTACTGGAAAACACTGTCCCAGGCAGCCGGCAGGAGCGAGGGGTGTATATATGGTCAAAACCAGAAGACATCAACACCGATCCATCTTCCCTTGAAGATTATTCCCTGCCAAGGAAAGTTTCGAGATGTCTTTGCCGCTCTAGTTGTCTGGGCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

500

Amino Acids

54.39

Weight (kDa)

9.38

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 215 - 634 1.1e-67 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 133, 1007
AccBSI CCGCTC 1 cut(s) 1479
AccIII TCCGGA 1 cut(s) 462
AciI CCGC 3 cut(s) 473, 1261, 1477
AclWI GGATC 1 cut(s) 1415
AcuI CTGAAG 1 cut(s) 821
AfaI GTAC 4 cut(s) 425, 886, 1050, 1344
AfiI CCNNNNNNNGG 6 cut(s) 365, 433, 447, 815, 1075, 1452
AgeI ACCGGT 1 cut(s) 1265
AgsI TTSAA 7 cut(s) 110, 245, 573, 639, 1184, 1312, 1436
AjnI CCWGG 2 cut(s) 252, 1360
AjuI GAANNNNNNNTTGG 2 cut(s) 1444, 1476
AloI GAACNNNNNNTCC 2 cut(s) 82, 114
AluBI AGCT 6 cut(s) 221, 365, 961, 1206, 1221, 1279
AluI AGCT 6 cut(s) 221, 365, 961, 1206, 1221, 1279
Alw26I GTCTC 2 cut(s) 744, 1091
AlwI GGATC 1 cut(s) 1415
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 813
Aor13HI TCCGGA 1 cut(s) 462
AoxI GGCC 2 cut(s) 1032, 1065
ApaI GGGCCC 1 cut(s) 1069
ApeKI GCWGC 9 cut(s) 46, 323, 549, 656, 1040, 1112, 1238, 1241, 1365
AseI ATTAAT 1 cut(s) 795
AsiGI ACCGGT 1 cut(s) 1265
Asp700I GAANNNNTTC 1 cut(s) 912
AspS9I GGNCC 4 cut(s) 627, 1065, 1066, 1253
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 409, 1333
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 2 cut(s) 627, 1253
BaeGI GKGCMC 1 cut(s) 1069
BanI GGYRCC 2 cut(s) 133, 1007
BanII GRGCYC 1 cut(s) 1069
BbsI GAAGAC 2 cut(s) 604, 1413
BbvCI CCTCAGC 1 cut(s) 284
BbvI GCAGC 9 cut(s) 33, 310, 536, 643, 1027, 1124, 1250, 1253, 1377
BccI CCATC 2 cut(s) 449, 1432
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 1088, 1122
BciT130I CCWGG 2 cut(s) 254, 1362
BciVI GTATCC 3 cut(s) 13, 448, 704
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 744, 1091
BfaI CTAG 3 cut(s) 567, 1218, 1482
BfmI CTRYAG 2 cut(s) 327, 853
BfuI GTATCC 3 cut(s) 13, 448, 704
Bme1390I CCNGG 3 cut(s) 94, 254, 1362
Bme18I GGWCC 2 cut(s) 627, 1253
BmeT110I CYCGRG 1 cut(s) 813
BmgT120I GGNCC 4 cut(s) 627, 1065, 1066, 1253
BmiI GGNNCC 6 cut(s) 91, 135, 477, 807, 1009, 1067
BmrFI CCNGG 3 cut(s) 94, 254, 1362
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 6 cut(s) 258, 460, 577, 758, 791, 1253
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 2 cut(s) 604, 1413
Bpu10I CCTNAGC 1 cut(s) 284
BpuEI CTTGAG 3 cut(s) 144, 345, 502
BpuMI CCSGG 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 5 cut(s) 253, 814, 1035, 1360, 1451
BsaWI WCCGGW 2 cut(s) 462, 1265
Bsc4I CCNNNNNNNGG 6 cut(s) 365, 433, 447, 815, 1075, 1452
Bse118I RCCGGY 3 cut(s) 524, 1265, 1368
Bse1I ACTGG 3 cut(s) 892, 1035, 1350
Bse3DI GCAATG 2 cut(s) 692, 1094
BseAI TCCGGA 1 cut(s) 462
BseBI CCWGG 2 cut(s) 254, 1362
BseDI CCNNGG 5 cut(s) 253, 814, 1035, 1360, 1451
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 6 cut(s) 365, 433, 447, 815, 1075, 1452
BseMI GCAATG 2 cut(s) 692, 1094
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 3 cut(s) 892, 1035, 1350
BseSI GKGCMC 1 cut(s) 1069
BseXI GCAGC 9 cut(s) 33, 310, 536, 643, 1027, 1124, 1250, 1253, 1377
BsgI GTGCAG 1 cut(s) 535
BshFI GGCC 2 cut(s) 1034, 1067
BshNI GGYRCC 2 cut(s) 133, 1007
BshTI ACCGGT 1 cut(s) 1265
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 5 cut(s) 94, 463, 525, 1266, 1369
BslFI GGGAC 1 cut(s) 1343
BslI CCNNNNNNNGG 6 cut(s) 365, 433, 447, 815, 1075, 1452
BsmAI GTCTC 2 cut(s) 744, 1091
BsmFI GGGAC 1 cut(s) 1343
BsmI GAATGC 2 cut(s) 387, 509
BsnI GGCC 2 cut(s) 1034, 1067
Bso31I GGTCTC 1 cut(s) 1091
BsoBI CYCGRG 1 cut(s) 813
Bsp120I GGGCCC 1 cut(s) 1065
Bsp1286I GDGCHC 1 cut(s) 1069
Bsp13I TCCGGA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 33, 492, 729, 1420
BspACI CCGC 3 cut(s) 473, 1261, 1477
BspANI GGCC 2 cut(s) 1034, 1067
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 462
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 6 cut(s) 91, 135, 477, 807, 1009, 1067
BspMAI CTGCAG 1 cut(s) 857
BspPI GGATC 1 cut(s) 1415
BspT107I GGYRCC 2 cut(s) 133, 1007
BspTNI GGTCTC 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 1479
BsrDI GCAATG 2 cut(s) 692, 1094
BsrFI RCCGGY 3 cut(s) 524, 1265, 1368
BsrI ACTGG 3 cut(s) 892, 1035, 1350
BssAI RCCGGY 3 cut(s) 524, 1265, 1368
BssECI CCNNGG 5 cut(s) 253, 814, 1035, 1360, 1451
BssMI GATC 4 cut(s) 33, 492, 729, 1420
BssT1I CCWWGG 2 cut(s) 1035, 1451
Bst2UI CCWGG 2 cut(s) 254, 1362
Bst4CI ACNGT 4 cut(s) 31, 319, 1188, 1357
Bst6I CTCTTC 1 cut(s) 943
BstC8I GCNNGC 3 cut(s) 943, 1261, 1370
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 4 cut(s) 36, 495, 732, 1423
BstMAI GTCTC 2 cut(s) 744, 1091
BstMBI GATC 4 cut(s) 33, 492, 729, 1420
BstMWI GCNNNNNNNGC 4 cut(s) 530, 1016, 1040, 1295
BstNI CCWGG 2 cut(s) 254, 1362
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 3 cut(s) 92, 252, 1360
BstSFI CTRYAG 2 cut(s) 327, 853
BstSLI GKGCMC 1 cut(s) 1069
BstV1I GCAGC 9 cut(s) 33, 310, 536, 643, 1027, 1124, 1250, 1253, 1377
BstV2I GAAGAC 2 cut(s) 604, 1413
BsuI GTATCC 3 cut(s) 13, 448, 704
BsuRI GGCC 2 cut(s) 1034, 1067
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 36, 1028, 1353
Cac8I GCNNGC 3 cut(s) 943, 1261, 1370
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 726
Cfr10I RCCGGY 3 cut(s) 524, 1265, 1368
Cfr13I GGNCC 4 cut(s) 627, 1065, 1066, 1253
Csp6I GTAC 4 cut(s) 424, 885, 1049, 1343
CspAI ACCGGT 1 cut(s) 1265
CspCI CAANNNNNGTGG 2 cut(s) 1017, 1052
CviAII CATG 8 cut(s) 602, 645, 660, 727, 1062, 1129, 1315, 1330
CviQI GTAC 4 cut(s) 424, 885, 1049, 1343
DdeI CTNAG 1 cut(s) 284
DpnI GATC 4 cut(s) 35, 494, 731, 1422
DpnII GATC 4 cut(s) 33, 492, 729, 1420
Eam1104I CTCTTC 1 cut(s) 943
EarI CTCTTC 1 cut(s) 943
Eco130I CCWWGG 2 cut(s) 1035, 1451
Eco24I GRGCYC 1 cut(s) 1069
Eco31I GGTCTC 1 cut(s) 1091
Eco47I GGWCC 2 cut(s) 627, 1253
Eco57I CTGAAG 1 cut(s) 821
Eco88I CYCGRG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 1066
EcoRII CCWGG 2 cut(s) 252, 1360
EcoT14I CCWWGG 2 cut(s) 1035, 1451
EcoT22I ATGCAT 3 cut(s) 511, 607, 646
EcoT38I GRGCYC 1 cut(s) 1069
ErhI CCWWGG 2 cut(s) 1035, 1451
FaeI CATG 8 cut(s) 605, 648, 663, 730, 1065, 1132, 1318, 1333
FaqI GGGAC 1 cut(s) 1343
FatI CATG 8 cut(s) 601, 644, 659, 726, 1061, 1128, 1314, 1329
FauI CCCGC 1 cut(s) 1268
FauNDI CATATG 2 cut(s) 497, 535
FbaI TGATCA 1 cut(s) 492
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 1069
FspBI CTAG 3 cut(s) 567, 1218, 1482
HaeIII GGCC 2 cut(s) 1034, 1067
HapII CCGG 5 cut(s) 94, 463, 525, 1266, 1369
Hin1II CATG 8 cut(s) 605, 648, 663, 730, 1065, 1132, 1318, 1333
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HinfI GANTC 6 cut(s) 60, 172, 670, 758, 849, 1199
HpaII CCGG 5 cut(s) 94, 463, 525, 1266, 1369
HphI GGTGA 2 cut(s) 409, 1333
Hpy166II GTNNAC 2 cut(s) 894, 1274
Hpy188I TCNGA 3 cut(s) 171, 559, 801
Hpy188III TCNNGA 8 cut(s) 37, 57, 161, 463, 667, 712, 727, 1464
Hpy8I GTNNAC 2 cut(s) 894, 1274
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 437, 796
HpyCH4III ACNGT 4 cut(s) 31, 319, 1188, 1357
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 1016, 1040, 1295
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 8 cut(s) 605, 648, 663, 730, 1065, 1132, 1318, 1333
Kpn2I TCCGGA 1 cut(s) 462
KroI GCCGGC 1 cut(s) 1368
KroNI GCCGGC 1 cut(s) 1370
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 33, 492, 729, 1420
LmnI GCTCC 6 cut(s) 218, 530, 811, 958, 965, 1375
Lsp1109I GCAGC 9 cut(s) 33, 310, 536, 643, 1027, 1124, 1250, 1253, 1377
LweI GCATC 6 cut(s) 258, 460, 577, 758, 791, 1253
MaeI CTAG 3 cut(s) 567, 1218, 1482
MaeIII GTNAC 1 cut(s) 1321
MalI GATC 4 cut(s) 35, 494, 731, 1422
MbiI CCGCTC 1 cut(s) 1479
MboI GATC 4 cut(s) 33, 492, 729, 1420
MboII GAAGA 8 cut(s) 609, 694, 960, 973, 976, 1418, 1419, 1448
MhlI GDGCHC 1 cut(s) 1069
MluCI AATT 4 cut(s) 225, 792, 819, 834
MmeI TCCRAC 2 cut(s) 745, 833
Mph1103I ATGCAT 3 cut(s) 511, 607, 646
MroI TCCGGA 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 1368
MroXI GAANNNNTTC 1 cut(s) 912
MseI TTAA 4 cut(s) 269, 581, 795, 977
MslI CAYNNNNRTG 2 cut(s) 725, 1319
MspI CCGG 5 cut(s) 94, 463, 525, 1266, 1369
MspR9I CCNGG 3 cut(s) 94, 254, 1362
Mva1269I GAATGC 2 cut(s) 387, 509
MvaI CCWGG 2 cut(s) 254, 1362
MwoI GCNNNNNNNGC 4 cut(s) 530, 1016, 1040, 1295
NaeI GCCGGC 1 cut(s) 1370
NciI CCSGG 1 cut(s) 94
NdeI CATATG 2 cut(s) 497, 535
NdeII GATC 4 cut(s) 33, 492, 729, 1420
NgoMIV GCCGGC 1 cut(s) 1368
NlaIII CATG 8 cut(s) 605, 648, 663, 730, 1065, 1132, 1318, 1333
NlaIV GGNNCC 6 cut(s) 91, 135, 477, 807, 1009, 1067
NmuCI GTSAC 1 cut(s) 1321
NsiI ATGCAT 3 cut(s) 511, 607, 646
NspI RCATGY 1 cut(s) 605
PagI TCATGA 1 cut(s) 726
PctI GAATGC 2 cut(s) 387, 509
PdiI GCCGGC 1 cut(s) 1370
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 6 cut(s) 60, 172, 670, 758, 849, 1199
PinAI ACCGGT 1 cut(s) 1265
PshBI ATTAAT 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 252, 1360
PspGI CCWGG 2 cut(s) 252, 1360
PspN4I GGNNCC 6 cut(s) 91, 135, 477, 807, 1009, 1067
PspOMI GGGCCC 1 cut(s) 1065
PspPI GGNCC 4 cut(s) 627, 1065, 1066, 1253
PstI CTGCAG 1 cut(s) 857
PstNI CAGNNNCTG 1 cut(s) 887
RsaI GTAC 4 cut(s) 425, 886, 1050, 1344
RsaNI GTAC 4 cut(s) 424, 885, 1049, 1343
RseI CAYNNNNRTG 2 cut(s) 725, 1319
SaqAI TTAA 4 cut(s) 269, 581, 795, 977
Sau3AI GATC 4 cut(s) 33, 492, 729, 1420
Sau96I GGNCC 4 cut(s) 627, 1065, 1066, 1253
ScrFI CCNGG 3 cut(s) 94, 254, 1362
SduI GDGCHC 1 cut(s) 1069
SfaNI GCATC 6 cut(s) 258, 460, 577, 758, 791, 1253
SfcI CTRYAG 2 cut(s) 327, 853
SinI GGWCC 2 cut(s) 627, 1253
SmiMI CAYNNNNRTG 2 cut(s) 725, 1319
SmlI CTYRAG 3 cut(s) 159, 360, 481
SmoI CTYRAG 3 cut(s) 159, 360, 481
Sse9I AATT 4 cut(s) 225, 792, 819, 834
SsiI CCGC 3 cut(s) 473, 1261, 1477
SspI AATATT 1 cut(s) 913
SspMI CTAG 3 cut(s) 567, 1218, 1482
StyD4I CCNGG 3 cut(s) 92, 252, 1360
StyI CCWWGG 2 cut(s) 1035, 1451
TaaI ACNGT 4 cut(s) 31, 319, 1188, 1357
TaqI TCGA 5 cut(s) 38, 236, 430, 1108, 1463
TaqII GACCGA 1 cut(s) 644
TasI AATT 4 cut(s) 225, 792, 819, 834
TauI GCSGC 1 cut(s) 1479
TfiI GAWTC 6 cut(s) 60, 172, 670, 758, 849, 1199
Tru1I TTAA 4 cut(s) 269, 581, 795, 977
Tru9I TTAA 4 cut(s) 269, 581, 795, 977
TscAI CASTG 3 cut(s) 36, 1035, 1360
TseFI GTSAC 1 cut(s) 1321
TseI GCWGC 9 cut(s) 46, 323, 549, 656, 1040, 1112, 1238, 1241, 1365
Tsp45I GTSAC 1 cut(s) 1321
TspDTI ATGAA 5 cut(s) 629, 905, 1137, 1198, 1216
TspGWI ACGGA 1 cut(s) 1036
TspRI CASTG 3 cut(s) 36, 1035, 1360
VpaK11BI GGWCC 2 cut(s) 627, 1253
VspI ATTAAT 1 cut(s) 795
XceI RCATGY 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 3 cut(s) 567, 1218, 1482
Zsp2I ATGCAT 3 cut(s) 511, 607, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.