FvH4_1g20150

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
12352224 .. 12357682
5459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20150.t3

Sequence Viewer

Length: 1593 bp
ATGGAAGTTGTTCTTGGCAAATGGGTTTGCGCATTTCTACTCTGCTCTTGGCTCATCTTCTCTGGTGTATACTCAGTGGTGAGATTACATGGTGACTCTAAAGTGAGAGCTGTAAATTTGGGAGGGTGGTTGGTGGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAATGGAGATATGCTTGATGGAACAGTGGTACAATTAAAGTCGGTAACTTTGGATAAGTATGTATCTGCAGAAAATGGGGGAGGGGCTAATGTTTCAGTTAGTAGAGATGTTGCATCTTCATGGGAAACGCTAAGGTTATGGAGAGTGTCTGAGTCAGAATTTCAATTTCGCACTTCACTAGGGCAGTTTCTAACTTGTGATGGTGCTGAAGGTTGCTCTGTTTCTGCAACTGCAGTATCACCTTCAACATCAGGAACATTTTACGTTGAGAGATATAACAATGGGAGGGTTCACATCAAGACAATGAGAGGCACATATTTACAGGCTACAACGGAAAACCAGCTTGTGGCAAACTATCCAGGGAAACCAGAATGGGATGATAATGCTGCCACATTTGAAATGACCATTGTTGCTAATGAATTGCATGGAGATTACCAGCTTGCAAATGGATATGGACACGATAAGGCCAAAGATGTTCTTAAGAGACATAGGAACAGTTTCGTCACTATAGGAGATTTCAATTTTCTGTCTAGACATGGAATAAATACTGTGAGGATCCCTGTTGGCTGGTGGATTGCTTATGATCCAGATCCTCCTGCACCATTTATTGGTGGAACTTTGGAAGCTCTTGATAATTCATTCTCATGGGCACAATCATATAATATTAGGTGCATCATTGACCTTCACGCGGCTCCTGGCTCTCAGAACGGGATGGAACATAGTGCTAGTAGGGATGGTTCAACTGATTGGCCTACTCCAGATTCCATTTCACAAACATTGCACGTTATAGACTTTCTAATTTCCAGGTATGCAAGACAGCCTGCTTTGCTGGGAATTGAGCTTTTGAATGAACCATCTGCTGCTACTGTTCCATTGGACACTTTAGTTTCGTATTACAAGCAAGGCTATCAAGTTGTTCGGAAACATTCATCAACAGCTTACGTAATAATTTGTCAAAGAATTGGCAATGCAGATCCATTGGAACTATTTCAGGCTAACATCGGCTCACATAAAATCGTGGTGGATTTGCATTATTACAATCTTTTTGACAATTTCTTTTTCAACATGAGCCCTACGGATAATATACAATTCATATACAAGAAGAGGGAAACTCAATTGCAGGCCCTGAACAGTGCAAACGGTCCACTTGTTTTTATTGGAGAGTGGGTCAACGAGTGGAATGCAACGAGTGCTTCTCAGACAGATTATCAAGACTTCGGGAGGGTTCAGTTAGAGGTTTACAGTGCCGCTTCATTTGGATGGGCTTACTGGACACTGAAGAATGATAGACCTCACTGGGATTTTGAATGGAACATTAGAAACAATTATCTTCAATTGAGTAGTTCGCCCAACATACGGAGTTTTAAGGGTTTAGTGTTGCTTGTACTGCTGTTCTATCTGCATCATATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

59.55

Weight (kDa)

5.75

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 60 - 196 5e-52 Domain of unknown function (DUF7910)
Cellulase PF00150 234 - 488 1.3e-20 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015519)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 31
AccB7I CCANNNNNTGG 2 cut(s) 523, 785
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 866
AciI CCGC 2 cut(s) 866, 1425
AclWI GGATC 6 cut(s) 155, 727, 740, 755, 761, 1145
AcsI RAATTY 2 cut(s) 115, 335
AcuI CTGAAG 2 cut(s) 405, 1475
AfaI GTAC 2 cut(s) 207, 1563
AfiI CCNNNNNNNGG 4 cut(s) 523, 785, 865, 1533
AflII CTTAAG 1 cut(s) 656
AgsI TTSAA 9 cut(s) 341, 423, 575, 697, 918, 1024, 1240, 1484, 1511
AjnI CCWGG 3 cut(s) 535, 871, 980
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 6 cut(s) 110, 520, 616, 803, 1018, 1115
AluI AGCT 6 cut(s) 110, 520, 616, 803, 1018, 1115
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 6 cut(s) 155, 727, 740, 755, 761, 1145
AlwNI CAGNNNCTG 1 cut(s) 1303
AoxI GGCC 3 cut(s) 642, 926, 1299
ApeKI GCWGC 2 cut(s) 563, 1037
ApoI RAATTY 2 cut(s) 115, 335
Asp700I GAANNNNTTC 3 cut(s) 9, 674, 1164
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 1300, 1319
AsuHPI GGTGA 3 cut(s) 91, 104, 408
AvaII GGWCC 1 cut(s) 1319
BaeGI GKGCMC 1 cut(s) 829
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BamHI GGATCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 1250
BbvI GCAGC 2 cut(s) 550, 1024
BccI CCATC 7 cut(s) 161, 188, 371, 883, 905, 1039, 1431
BcgI CGANNNNNNTGC 2 cut(s) 1340, 1374
BciT130I CCWGG 3 cut(s) 537, 873, 982
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 3 cut(s) 356, 708, 903
BfmI CTRYAG 3 cut(s) 243, 408, 684
BfrI CTTAAG 1 cut(s) 656
BisI GCNGC 4 cut(s) 564, 867, 1038, 1425
BlsI GCNGC 4 cut(s) 565, 868, 1039, 1426
Bme1390I CCNGG 3 cut(s) 537, 873, 982
Bme18I GGWCC 1 cut(s) 1319
BmgT120I GGNCC 2 cut(s) 1300, 1319
BmiI GGNNCC 2 cut(s) 734, 870
BmrFI CCNGG 3 cut(s) 537, 873, 982
BmrI ACTGGG 1 cut(s) 1483
BmsI GCATC 3 cut(s) 299, 858, 1588
BmuI ACTGGG 1 cut(s) 1483
BplI GAGNNNNNCTC 4 cut(s) 1273, 1305, 1357, 1389
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 1120
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 536
BsaXI ACNNNNNCTCC 2 cut(s) 1329, 1359
Bsc4I CCNNNNNNNGG 4 cut(s) 523, 785, 865, 1533
Bse1I ACTGG 2 cut(s) 1451, 1478
Bse3DI GCAATG 2 cut(s) 953, 1150
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 3 cut(s) 537, 873, 982
BseDI CCNNGG 1 cut(s) 536
BseGI GGATG 4 cut(s) 559, 894, 916, 1442
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 4 cut(s) 523, 785, 865, 1533
BseMI GCAATG 2 cut(s) 953, 1150
BseMII CTCAG 4 cut(s) 87, 318, 893, 1388
BseNI ACTGG 2 cut(s) 1451, 1478
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 2 cut(s) 550, 1024
BseYI CCCAGC 1 cut(s) 1006
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 1 cut(s) 866
BshFI GGCC 3 cut(s) 644, 928, 1301
BslI CCNNNNNNNGG 4 cut(s) 523, 785, 865, 1533
BsmAI GTCTC 1 cut(s) 655
BsmI GAATGC 2 cut(s) 171, 1363
BsnI GGCC 3 cut(s) 644, 928, 1301
Bsp1286I GDGCHC 2 cut(s) 829, 1250
Bsp143I GATC 5 cut(s) 147, 732, 760, 766, 1150
BspACI CCGC 2 cut(s) 866, 1425
BspANI GGCC 3 cut(s) 644, 928, 1301
BspCNI CTCAG 4 cut(s) 86, 319, 892, 1387
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 2 cut(s) 734, 870
BspMAI CTGCAG 2 cut(s) 247, 412
BspPI GGATC 6 cut(s) 155, 727, 740, 755, 761, 1145
BspTI CTTAAG 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 953, 1150
BsrI ACTGG 2 cut(s) 1451, 1478
BssECI CCNNGG 1 cut(s) 536
BssMI GATC 5 cut(s) 147, 732, 760, 766, 1150
BssNAI GTATAC 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 70
Bst2UI CCWGG 3 cut(s) 537, 873, 982
Bst4CI ACNGT 7 cut(s) 202, 674, 727, 1045, 1310, 1319, 1421
Bst6I CTCTTC 1 cut(s) 1274
BstAFI CTTAAG 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 1367
BstBAI YACGTR 1 cut(s) 1120
BstC8I GCNNGC 3 cut(s) 618, 999, 1299
BstDEI CTNAG 5 cut(s) 73, 308, 327, 879, 1374
BstF5I GGATG 4 cut(s) 559, 894, 916, 1442
BstFNI CGCG 1 cut(s) 866
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 5 cut(s) 150, 735, 763, 769, 1153
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 5 cut(s) 147, 732, 760, 766, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 1003, 1367, 1564
BstNI CCWGG 3 cut(s) 537, 873, 982
BstSCI CCNGG 3 cut(s) 535, 871, 980
BstSFI CTRYAG 3 cut(s) 243, 408, 684
BstSLI GKGCMC 1 cut(s) 829
BstSNI TACGTA 1 cut(s) 1120
BstUI CGCG 1 cut(s) 866
BstV1I GCAGC 2 cut(s) 550, 1024
BstX2I RGATCY 3 cut(s) 732, 766, 1150
BstYI RGATCY 3 cut(s) 732, 766, 1150
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 3 cut(s) 644, 928, 1301
BtsCI GGATG 4 cut(s) 559, 894, 916, 1442
BtsIMutI CAGTG 6 cut(s) 81, 207, 1315, 1426, 1451, 1471
Cac8I GCNNGC 3 cut(s) 618, 999, 1299
CaiI CAGNNNCTG 1 cut(s) 1303
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 1300, 1319
Csp6I GTAC 2 cut(s) 206, 1562
CviAII CATG 6 cut(s) 89, 297, 602, 713, 822, 1243
CviQI GTAC 2 cut(s) 206, 1562
DdeI CTNAG 5 cut(s) 73, 308, 327, 879, 1374
DpnI GATC 5 cut(s) 149, 734, 762, 768, 1152
DpnII GATC 5 cut(s) 147, 732, 760, 766, 1150
Eam1104I CTCTTC 1 cut(s) 1274
EarI CTCTTC 1 cut(s) 1274
Eco105I TACGTA 1 cut(s) 1120
Eco24I GRGCYC 1 cut(s) 1250
Eco47I GGWCC 1 cut(s) 1319
Eco57I CTGAAG 2 cut(s) 405, 1475
EcoO109I RGGNCCY 1 cut(s) 1300
EcoRII CCWGG 3 cut(s) 535, 871, 980
EcoT38I GRGCYC 1 cut(s) 1250
FaeI CATG 6 cut(s) 92, 300, 605, 716, 825, 1246
FalI AAGNNNNNCTT 3 cut(s) 29, 639, 671
FatI CATG 6 cut(s) 88, 296, 601, 712, 821, 1242
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 564, 867, 1038, 1425
FokI GGATG 4 cut(s) 566, 901, 923, 1449
FriOI GRGCYC 1 cut(s) 1250
Fsp4HI GCNGC 4 cut(s) 564, 867, 1038, 1425
FspBI CTAG 3 cut(s) 356, 708, 903
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 1 cut(s) 31
GluI GCNGC 4 cut(s) 564, 867, 1038, 1425
GsaI CCCAGC 1 cut(s) 1010
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 3 cut(s) 644, 928, 1301
HhaI GCGC 1 cut(s) 32
Hin1II CATG 6 cut(s) 92, 300, 605, 716, 825, 1246
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 1348
HindII GTYRAC 1 cut(s) 1348
HinfI GANTC 3 cut(s) 95, 329, 938
HphI GGTGA 3 cut(s) 91, 104, 408
Hpy166II GTNNAC 5 cut(s) 70, 469, 1322, 1348, 1417
Hpy188I TCNGA 5 cut(s) 328, 334, 882, 1098, 1377
Hpy188III TCNNGA 8 cut(s) 429, 475, 708, 764, 806, 935, 1388, 1396
Hpy8I GTNNAC 5 cut(s) 70, 469, 1322, 1348, 1417
HpyAV CCTTC 5 cut(s) 134, 165, 380, 429, 869
HpyCH4III ACNGT 7 cut(s) 202, 674, 727, 1045, 1310, 1319, 1421
HpyCH4IV ACGT 3 cut(s) 441, 960, 1119
HpyF10VI GCNNNNNNNGC 3 cut(s) 1003, 1367, 1564
HpyF3I CTNAG 5 cut(s) 73, 308, 327, 879, 1374
HpySE526I ACGT 3 cut(s) 441, 960, 1119
Hsp92II CATG 6 cut(s) 92, 300, 605, 716, 825, 1246
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 147, 732, 760, 766, 1150
LmnI GCTCC 1 cut(s) 874
Lsp1109I GCAGC 2 cut(s) 550, 1024
LweI GCATC 3 cut(s) 299, 858, 1588
MaeI CTAG 3 cut(s) 356, 708, 903
MaeII ACGT 3 cut(s) 441, 960, 1119
MaeIII GTNAC 3 cut(s) 92, 220, 679
MalI GATC 5 cut(s) 149, 734, 762, 768, 1152
MboI GATC 5 cut(s) 147, 732, 760, 766, 1150
MboII GAAGA 5 cut(s) 49, 285, 1291, 1468, 1499
MfeI CAATTG 2 cut(s) 1292, 1511
MflI RGATCY 3 cut(s) 732, 766, 1150
MhlI GDGCHC 2 cut(s) 829, 1250
MlyI GAGTC 2 cut(s) 89, 338
MmeI TCCRAC 1 cut(s) 125
MroXI GAANNNNTTC 3 cut(s) 9, 674, 1164
MseI TTAA 3 cut(s) 212, 657, 1542
MslI CAYNNNNRTG 3 cut(s) 295, 820, 1435
MspCI CTTAAG 1 cut(s) 656
MspR9I CCNGG 3 cut(s) 537, 873, 982
MunI CAATTG 2 cut(s) 1292, 1511
Mva1269I GAATGC 2 cut(s) 171, 1363
MvaI CCWGG 3 cut(s) 537, 873, 982
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 3 cut(s) 1003, 1367, 1564
NdeII GATC 5 cut(s) 147, 732, 760, 766, 1150
NlaIII CATG 6 cut(s) 92, 300, 605, 716, 825, 1246
NlaIV GGNNCC 2 cut(s) 734, 870
NmuCI GTSAC 2 cut(s) 92, 679
NsbI TGCGCA 1 cut(s) 31
PctI GAATGC 2 cut(s) 171, 1363
PdmI GAANNNNTTC 3 cut(s) 9, 674, 1164
PfeI GAWTC 1 cut(s) 938
PflMI CCANNNNNTGG 2 cut(s) 523, 785
PkrI GCNGC 4 cut(s) 565, 868, 1039, 1426
PleI GAGTC 2 cut(s) 89, 337
PpsI GAGTC 2 cut(s) 89, 337
Ppu21I YACGTR 1 cut(s) 1120
Psp6I CCWGG 3 cut(s) 535, 871, 980
PspFI CCCAGC 1 cut(s) 1006
PspGI CCWGG 3 cut(s) 535, 871, 980
PspN4I GGNNCC 2 cut(s) 734, 870
PspPI GGNCC 2 cut(s) 1300, 1319
PsrI GAACNNNNNNTAC 2 cut(s) 898, 930
PstI CTGCAG 2 cut(s) 247, 412
PstNI CAGNNNCTG 1 cut(s) 1303
PsuI RGATCY 3 cut(s) 732, 766, 1150
RsaI GTAC 2 cut(s) 207, 1563
RsaNI GTAC 2 cut(s) 206, 1562
RseI CAYNNNNRTG 3 cut(s) 295, 820, 1435
SaqAI TTAA 3 cut(s) 212, 657, 1542
SatI GCNGC 4 cut(s) 564, 867, 1038, 1425
Sau3AI GATC 5 cut(s) 147, 732, 760, 766, 1150
Sau96I GGNCC 2 cut(s) 1300, 1319
SchI GAGTC 2 cut(s) 89, 338
ScrFI CCNGG 3 cut(s) 537, 873, 982
SduI GDGCHC 2 cut(s) 829, 1250
SfaNI GCATC 3 cut(s) 299, 858, 1588
SfcI CTRYAG 3 cut(s) 243, 408, 684
SinI GGWCC 1 cut(s) 1319
SmiMI CAYNNNNRTG 3 cut(s) 295, 820, 1435
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
SnaBI TACGTA 1 cut(s) 1120
SsiI CCGC 2 cut(s) 866, 1425
SspI AATATT 1 cut(s) 841
SspMI CTAG 3 cut(s) 356, 708, 903
StyD4I CCNGG 3 cut(s) 535, 871, 980
TaaI ACNGT 7 cut(s) 202, 674, 727, 1045, 1310, 1319, 1421
TaiI ACGT 3 cut(s) 444, 963, 1122
TatI WGTACW 1 cut(s) 1561
TauI GCSGC 2 cut(s) 869, 1427
TfiI GAWTC 1 cut(s) 938
Tru1I TTAA 3 cut(s) 212, 657, 1542
Tru9I TTAA 3 cut(s) 212, 657, 1542
TscAI CASTG 6 cut(s) 81, 207, 1315, 1426, 1458, 1478
TseFI GTSAC 2 cut(s) 92, 679
TseI GCWGC 2 cut(s) 563, 1037
Tsp45I GTSAC 2 cut(s) 92, 679
TspDTI ATGAA 7 cut(s) 285, 609, 804, 1041, 1095, 1258, 1419
TspGWI ACGGA 3 cut(s) 524, 1268, 1549
TspRI CASTG 6 cut(s) 81, 207, 1315, 1426, 1458, 1478
Van91I CCANNNNNTGG 2 cut(s) 523, 785
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 1319
XapI RAATTY 2 cut(s) 115, 335
XbaI TCTAGA 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 3 cut(s) 9, 674, 1164
XspI CTAG 3 cut(s) 356, 708, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.